HHsearch alignment for GI: 254780300 and conserved domain: PRK12562
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional.
Probab=100.00 E-value=0 Score=659.69 Aligned_cols=302 Identities=23% Similarity=0.278 Sum_probs=279.2
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99777774178223899999999999999996442048775212897699996078733789999798761352111233
Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT 80 (316)
Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~ 80 (316)
T Consensus 1 m~~~~~kh~L~i~dls~~ei~~il~~A~~~k~~~~~~-~~~~~L~gK~v~~lF~e~STRTR~SFE~A~~~LGg~~i~l~~ 79 (334)
T PRK12562 1 MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKNG-KEVARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGP 79 (334)
T ss_pred CCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECC
T ss_conf 9999888857710069999999999999998666458-867678999899996789704799999999985997898587
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC--CCCCC
Q ss_conf 3321013334224799987413671465203210055420012342111123456631223322222220122--21000
Q gi|254780300|r 81 KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFK--GKISN 158 (316)
Q Consensus 81 ~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~--g~l~~ 158 (316)
T Consensus 80 ~~s~~~kgEsl~Dt~~vLs~~-~D~iv~R~~~~~~~~~la~~s~vP-VIN-g~~~~~HPtQaL~Dl~Ti~E~~~g~~l~~ 156 (334)
T PRK12562 80 SGSQIGHKESIKDTARVLGRM-YDGIQYRGHGQEVVETLAEYAGVP-VWN-GLTNEFHPTQLLADLLTMQEHLPGKAFNE 156 (334)
T ss_pred CCCCCCCCCCHHHHHHHHHHH-CCEEEECCCCCHHHHHHHHHCCCC-EEE-CCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 645278998889999999860-777897355738999999975999-888-99877671799999999999846898677
Q ss_pred CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEEC
Q ss_conf 10010355443301334466420134205532775322211-----------2123433005845603686221000113
Q gi|254780300|r 159 LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQ 227 (316)
Q Consensus 159 l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316)
T Consensus 157 l~i~~vGD~-~n~va~S~i~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~~a~~~aDvvytd~w~ 235 (334)
T PRK12562 157 MTLVYAGDA-RNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWV 235 (334)
T ss_pred EEEEEECCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECHHHHCCCCCEEEEEHHH
T ss_conf 189996888-6635799999999749869997897668888999999999997099289984688870578789864265
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHC-CCCCEEECCCCC------------------CCCCCCCHHHHCCCCCHHHH
Q ss_conf 31233344445554202357588999837-998599558998------------------76874476797699701686
Q gi|254780300|r 228 QERIPRSLIPSIREYKHVYSLDEKKLKYA-KKDALVMHPGPI------------------NRNYEISSSVADGSQSIIQY 288 (316)
Q Consensus 228 ~e~~~~~~~~~~~~~~~~~~v~~~~l~~a-~~~ai~mHcLP~------------------~Rg~Ev~~~v~d~~~s~v~~ 288 (316)
T Consensus 236 sm~~~~e~~~e~~~~~~~y~v~~~~~~~~~~~~~~~mHclPa~r~~~~~~~~~~~~~~~~~RG~EIt~~V~d~~~S~i~~ 315 (334)
T PRK12562 236 SMGEPKEKWAERIALLRDYQVNSKMMALTGNPQVKFLHCLPAFHDDQTTLGKKMAAEFGLHGGMEVTDEVFESPASIVFD 315 (334)
T ss_pred HCCCHHHHHHHHHHHHHCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHCCCCCCCCCEECHHHHCCCCCHHHH
T ss_conf 52546677899998730862259999621899919958998887322110012200257888728568885888666999
Q ss_pred HHHHHHHHHHHHHHHHHCC
Q ss_conf 8775699999999999778
Q gi|254780300|r 289 QVEMGVAVRMAIIKELLEN 307 (316)
Q Consensus 289 Qa~Nrl~~~~AlL~~~l~~ 307 (316)
T Consensus 316 QaeNrl~vr~AvL~~~Lgk 334 (334)
T PRK12562 316 QAENRMHTIKAVMVATLAK 334 (334)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9871399999999998575