HHsearch alignment for GI: 254780300 and conserved domain: TIGR00670
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=100.00 E-value=0 Score=645.02 Aligned_cols=300 Identities=36% Similarity=0.538 Sum_probs=279.4
Q ss_pred CCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEE--EEECCCCHHHHHHHHHHHHHCC--CCCCCCC-C
Q ss_conf 741782238999999999999999964420487752128976999--9607873378999979876135--2111233-3
Q gi|254780300|r 7 YNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQIN--LFLETSTRTQTSFEVAGKLLGV--HVININT-K 81 (316)
Q Consensus 7 k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~--lF~kpStRTR~SFe~A~~~LGg--~~i~l~~-~ 81 (316)
T Consensus 1 rhli~i~Dl~~Eei~~lL~~A~~l~~~~~~~~~~~~~L~gKi~a~YilFFEPSTRTR~SFE~A~KRLGgPn~v~~~~~~~ 80 (336)
T TIGR00670 1 RHLISISDLSREEIELLLETAEELEQVASGEKKLKEALKGKIVANYILFFEPSTRTRLSFETAMKRLGGPNDVVNFSDSE 80 (336)
T ss_pred CCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 96223155785569999999999986315766215866397799999986078550135889888727985456225563
Q ss_pred CCCCCCCCCCCCHHHHHHHHC-CCCEEEECCC----CCHHHHHHCCCC----CCC-CCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 321013334224799987413-6714652032----100554200123----421-111234566312233222222201
Q gi|254780300|r 82 NSAMKKGENIADTIATLNALR-PNIIVIRHPY----SGAVNSLMHKIK----GPS-IINAGDGTHEHPSQALLDAFAIRH 151 (316)
Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~-~d~iv~R~~~----~~~~~~~a~~~s----~pp-VINag~~~~~HP~Q~LaDl~Ti~e 151 (316)
T Consensus 81 ~sS~~KGEtL~DTi~~~~~y~D~D~iViRH~~~GvCegaar~~ae~~~R~~~~vPsviNAGDG~~qHPTQ~LLDLyTi~~ 160 (336)
T TIGR00670 81 TSSVAKGETLADTIKTLSAYGDSDAIVIRHPLEGVCEGAARLAAEVSDRLGIEVPSVINAGDGSGQHPTQTLLDLYTIYE 160 (336)
T ss_pred CCCHHCCCCHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 41121054478899988540475569983586541346889998863110457871663687878797534788999998
Q ss_pred CCC-------CCCCCCEEECCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCC-CCCCC------CCCCCCCCCCHHHCCC
Q ss_conf 222-------100010010355443301334466420134-20553277532-22112------1234330058456036
Q gi|254780300|r 152 FKG-------KISNLHIAICGDILHSRVARSDIMLLNTMG-ARIRVIAPITL-LPKDI------SNMGVEVFHDMQKGLK 216 (316)
Q Consensus 152 ~~g-------~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g-~~v~~~~P~~~-~~~~~------~~~~~~~~~d~~ea~~ 216 (316)
T Consensus 161 ~fGPDnP~l~~~~Gl~iA~vGDlkygRtvhS~~~~L~~f~~~~v~l~sP~~LrmP~~~~e~~~~~G~~~~~~~~l~e~~~ 240 (336)
T TIGR00670 161 EFGPDNPALERLDGLKIALVGDLKYGRTVHSLIKALALFGNAEVYLISPEELRMPKEILEDLKAKGVKVRETESLEEVID 240 (336)
T ss_pred HHCCCCCCHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCHHHHCHHHHHHHHHHCCCEEEEEEEHHHHHC
T ss_conf 71888630322288579998431202476678899865189569986772430617889998528962899522434421
Q ss_pred CCCEE---EEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCC--CEEECCCCCCCCCCCCHHHHCCCCCHHHH-HH
Q ss_conf 86221---00011331233344445554202357588999837998--59955899876874476797699701686-87
Q gi|254780300|r 217 NVDVI---MILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKD--ALVMHPGPINRNYEISSSVADGSQSIIQY-QV 290 (316)
Q Consensus 217 ~aDvv---~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~--ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~-Qa 290 (316)
T Consensus 241 ~~DVlkiWY~tRiQkER~~~~d~~ey~~~~~~Y~i~~~~L~~~~~~~e~ivlHPlPv~RvdEI~~~vd~~~~~~~f~~Q~ 320 (336)
T TIGR00670 241 EADVLKIWYVTRIQKERFPEDDPEEYEKVRGSYGITAERLEAAKKGKEVIVLHPLPVHRVDEIDPEVDDTPHAKYFKDQA 320 (336)
T ss_pred CCCEEEEEEEECCCCCCCCCCCHHHHHHHHCEEEEEHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 57847886420011123788788999841001466288986306899368847889788566774323664467888875
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 7569999999999977
Q gi|254780300|r 291 EMGVAVRMAIIKELLE 306 (316)
Q Consensus 291 ~Nrl~~~~AlL~~~l~ 306 (316)
T Consensus 321 ~nGV~vRMAlL~~~~~ 336 (336)
T TIGR00670 321 FNGVPVRMALLSLLLG 336 (336)
T ss_pred HCCHHHHHHHHHHHCC
T ss_conf 1568999999999629