HHsearch alignment for GI: 254780300 and conserved domain: pfam00185
>pfam00185 OTCace Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain.
Probab=100.00 E-value=5.4e-43 Score=298.95 Aligned_cols=143 Identities=41% Similarity=0.585 Sum_probs=130.0
Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------C-CCCCCCCCCHHHCCCCCCEEEEE
Q ss_conf 00100103554433013344664201342055327753222112-----------1-23433005845603686221000
Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------S-NMGVEVFHDMQKGLKNVDVIMIL 224 (316)
Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~-~~~~~~~~d~~ea~~~aDvv~~~ 224 (316)
T Consensus 1 ~g~~i~~vGD~~~~rv~~S~~~~~~~~g~~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~al~~aDvvyt~ 80 (155)
T pfam00185 1 DGLKVAIVGDGKHNRVAHSLILALAKFGMEVVLVAPKGLPPDPELVDEAKKNALKSGGISITVTDDLEEALKGADVVYTD 80 (155)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCEEEEE
T ss_conf 99899998378727499999999998499899987852388889999999998862897499984999984539999997
Q ss_pred EECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11331233344445554202357588999837998599558998768744767976997016868775699999999999
Q gi|254780300|r 225 RMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKEL 304 (316)
Q Consensus 225 ~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~ 304 (316)
T Consensus 81 ~wq~e~~~-----~~~~~~~~y~v~~~ll~~~~~~~i~mH~LP~~R~~Ei~~~V~~~p~s~v~~Qa~Nr~~~r~AlL~~l 155 (155)
T pfam00185 81 RWQKEREE-----RLEEFKPDYQVTAELLKKAKPDAIVMHPLPAHRGEEITDDVDDGPRSVIFDQAENGLHVRMALLALL 155 (155)
T ss_pred EEEHHHHH-----HHHHCCCCCEECHHHHHHCCCCCEEECCCCCCCCEEECHHHHCCCCCHHHHHHHHCHHHHHHHHHHC
T ss_conf 65410555-----6764176947999999614899489668776668196577855874689999983899999999769