HHsearch results for GI: 254780300 and protein with PDBid: 1pvv_A
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A
Probab=100.00 E-value=0 Score=620.14 Aligned_cols=302 Identities=27% Similarity=0.349 Sum_probs=276.2
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99777774178223899999999999999996442048775212897699996078733789999798761352111233
Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT 80 (316)
Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~ 80 (316)
+.++.+||||+++||++++++.||++|..+|..+... ...+.|+||+++++|+|||||||+|||+|+.+|||+++++++
T Consensus 2 ~~~l~gk~ll~i~dls~~~i~~ll~~A~~lk~~~~~~-~~~~~L~gk~v~llF~epSTRTR~SFe~A~~~LG~~vi~~~~ 80 (315)
T 1pvv_A 2 VVSLAGRDLLCLQDYTAEEIWTILETAKMFKIWQKIG-KPHRLLEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNA 80 (315)
T ss_dssp CCCCTTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHHT-CCCCTTTTCEEEEEESSCCSHHHHHHHHHHHHTTSEEEEEEG
T ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf 9888899827511189999999999999998776458-976336999899984489730589999999976995432042
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 33210133342247999874136714652032100554200123421111234566312233222222201222100010
Q gi|254780300|r 81 KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLH 160 (316)
Q Consensus 81 ~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ 160 (316)
++|+++||||++||++++++| +|+||+||+.++.+.++++++++| ||| |+|..+||||+|+|++||+|++|.++|++
T Consensus 81 ~~ss~~kgEs~~Dt~~~ls~y-~D~iviR~~~~~~~~~~a~~s~vP-VIN-g~~~~~HPtQaL~Dl~Ti~e~~g~~~~l~ 157 (315)
T 1pvv_A 81 QDLQLRRGETIADTARVLSRY-VDAIMARVYDHKDVEDLAKYATVP-VIN-GLSDFSHPCQALADYMTIWEKKGTIKGVK 157 (315)
T ss_dssp GGSTTTTTCCHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHCSSC-EEE-EECSSCCHHHHHHHHHHHHHHHSCCTTCE
T ss_pred CCCCCCCCCHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHCCCC-EEE-CCCCCCCHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 223477886098999997525-887888605710699999867998-896-99986467789876789998728756877
Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECCH
Q ss_conf 0103554433013344664201342055327753222112-----------12343300584560368622100011331
Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316)
Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316)
|+|+|| ++||+||++.+++++|+++++++|+++.|... .+..+++++|++++++++||||++.|.++
T Consensus 158 i~~vGd--~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDvvyt~~~~~~ 235 (315)
T 1pvv_A 158 VVYVGD--GNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASM 235 (315)
T ss_dssp EEEESC--CCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCS
T ss_pred EEEECC--CCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEHHHHHC
T ss_conf 999678--753156899999984187899889866886899999999998719859997699998557999954188764
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 23334444555420235758899983799859955899876874476797699701686877569999999999977814
Q gi|254780300|r 230 RIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQN 309 (316)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~ 309 (316)
.. +....+..+|+..||||.++|+.++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||+++||+..
T Consensus 236 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~i~mHplP~~Rg~Ei~~~v~~~~~s~~~~Qa~Ngl~vrmAlL~~~lgg~~ 314 (315)
T 1pvv_A 236 GQ-EAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGGIK 314 (315)
T ss_dssp ST-TSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CC-CCCHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 66-10259999877635633999944899989989999878870088886699776999997019999999999976886