HHsearch results for GI: 254780300 and protein with PDBid: 1vlv_A

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Probab=100.00  E-value=0  Score=617.33  Aligned_cols=299  Identities=23%  Similarity=0.294  Sum_probs=273.6

Q ss_pred             CC-CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99-77777417822389999999999999999644204877521289769999607873378999979876135211123
Q gi|254780300|r    1 MY-SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ   79 (316)
Q Consensus         1 m~-~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~   79 (316)
                      |. ++.+||||+++||+++|++.||++|.++|..+... ...+.|+||+++++|+|||||||+|||+|+.+|||++++++
T Consensus        13 m~~~l~gk~llsi~dls~~ei~~ll~~A~~lk~~~~~~-~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~   91 (325)
T 1vlv_A           13 MSVNLKGRSLLTLLDFSPEEIRYLLDISKQVKMENRSK-LRTERFKGMTLAMIFEKRSTRTRLAFETAFAEEGGHPIFLS   91 (325)
T ss_dssp             CCCCCTTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHHT-CCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf             56778899808511089999999999999997642247-77645799889998568975378999999998398589746


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             33321013334224799987413671465203210055420012342111123456631223322222220122210001
Q gi|254780300|r   80 TKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNL  159 (316)
Q Consensus        80 ~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l  159 (316)
                      +.+|+++||||++||++|+++| +|++++|++.++.+..+++++++| |||||++ .+||||+|+|+|||+|.+|.++|+
T Consensus        92 ~~~ss~~kgEsl~Dt~~~ls~y-~D~ivvR~~~~~~~~~~a~~~~vP-VINa~~~-~~HPtQaLlDl~Ti~e~~g~l~gl  168 (325)
T 1vlv_A           92 PNDIHLGAKESLEDTARVLGRM-VDAIMFRGYKQETVEKLAEYSGVP-VYNGLTD-EFHPTQALADLMTIEENFGRLKGV  168 (325)
T ss_dssp             TTTCCTTTSSCHHHHHHHHHTT-CSEEEEESSCHHHHHHHHHHHCSC-EEESCCS-SCCHHHHHHHHHHHHHHHSCSTTC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHCCCC-EECCCCC-CCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             6433567885368999999851-651577404420466666506764-1417888-777899999999999983974567


Q ss_pred             CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECC
Q ss_conf             00103554433013344664201342055327753222112-----------1234330058456036862210001133
Q gi|254780300|r  160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQ  228 (316)
Q Consensus       160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~  228 (316)
                      +|+|+||+. +++++|++.+++++|+++++++|+++.|+..           .+..+++++++++|+++|||||+++|+.
T Consensus       169 ~i~~vGd~~-~~~~~s~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aDvvyt~~~~~  247 (325)
T 1vlv_A          169 KVVFMGDTR-NNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWAS  247 (325)
T ss_dssp             EEEEESCTT-SHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC-
T ss_pred             CCEEECCCC-CCEEEHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCEEEEHHHHH
T ss_conf             725766875-5375319999997598499973843388889999876554423764201069999970698664016667


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCHHHHHH-CCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             123334444555420235758899983-79985995589987687447679769970168687756999999999997
Q gi|254780300|r  229 ERIPRSLIPSIREYKHVYSLDEKKLKY-AKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL  305 (316)
Q Consensus       229 e~~~~~~~~~~~~~~~~~~v~~~~l~~-a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l  305 (316)
                      ++.... .....+++.+||||.++|+. ++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||.++|
T Consensus       248 ~~~~~~-~~~~~~~~~~y~v~~~~l~~~ak~~~i~mHplP~~Rg~EI~~~V~d~~~s~i~~Qa~Ngl~vr~AlL~~lL  324 (325)
T 1vlv_A          248 MGEEDK-EKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL  324 (325)
T ss_dssp             ----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHCCCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             545466-68998760375056999972189998996998489984828878569987399998725999999999986