Query gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus Liberibacter asiaticus str. psy62] Match_columns 316 No_of_seqs 112 out of 3842 Neff 6.7 Searched_HMMs 23785 Date Mon May 30 09:09:50 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780300.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ml4_A Aspartate transcarbamoy 100.0 0 0 635.6 23.9 298 3-307 2-307 (308) 2 3d6n_B Aspartate carbamoyltran 100.0 0 0 636.7 20.0 289 6-305 1-290 (291) 3 3csu_A Protein (aspartate carb 100.0 0 0 629.6 22.3 298 2-310 2-309 (310) 4 2at2_A Aspartate carbamoyltran 100.0 0 0 630.8 21.1 298 6-314 1-298 (300) 5 1duv_G Octase-1, ornithine tra 100.0 0 0 622.8 25.8 301 2-307 1-333 (333) 6 2rgw_A Aspartate carbamoyltran 100.0 0 0 624.7 23.6 295 6-309 1-304 (306) 7 2w37_A Ornithine carbamoyltran 100.0 0 0 623.1 24.6 299 3-308 25-354 (359) 8 3grf_A Ornithine carbamoyltran 100.0 0 0 621.4 24.4 299 4-309 5-326 (328) 9 1pvv_A Otcase, ornithine carba 100.0 0 0 620.1 24.5 302 1-309 2-314 (315) 10 1vlv_A Otcase, ornithine carba 100.0 0 0 617.3 24.5 299 1-305 13-324 (325) 11 1dxh_A Ornithine carbamoyltran 100.0 0 0 613.1 25.7 302 2-307 2-334 (335) 12 1oth_A Protein (ornithine tran 100.0 0 0 610.4 26.7 304 3-313 3-317 (321) 13 3gd5_A Otcase, ornithine carba 100.0 0 0 613.3 22.2 297 3-310 10-317 (323) 14 2i6u_A Otcase, ornithine carba 100.0 0 0 608.6 23.2 295 5-307 1-306 (307) 15 1pg5_A Aspartate carbamoyltran 100.0 0 0 604.1 24.1 293 6-307 1-299 (299) 16 1zq6_A Otcase, ornithine carba 100.0 0 0 596.6 23.0 296 3-308 20-357 (359) 17 2ef0_A Ornithine carbamoyltran 100.0 0 0 595.6 22.0 292 5-306 8-301 (301) 18 1js1_X Transcarbamylase; alpha 100.0 0 0 594.1 21.2 294 6-310 1-319 (324) 19 3jtm_A Formate dehydrogenase, 97.1 0.0015 6.3E-08 41.7 7.0 92 155-263 161-253 (351) 20 1gdh_A D-glycerate dehydrogena 96.4 0.005 2.1E-07 38.4 5.6 94 155-265 143-237 (320) 21 1mx3_A CTBP1, C-terminal bindi 96.4 0.0066 2.8E-07 37.5 6.0 93 155-264 165-257 (347) 22 2rir_A Dipicolinate synthase, 96.3 0.014 6.1E-07 35.3 7.3 96 150-266 149-246 (300) 23 2nac_A NAD-dependent formate d 96.1 0.014 5.9E-07 35.4 6.7 93 155-264 188-281 (393) 24 1wwk_A Phosphoglycerate dehydr 96.1 0.011 4.6E-07 36.1 6.0 92 155-265 139-231 (307) 25 2g76_A 3-PGDH, D-3-phosphoglyc 96.0 0.021 8.7E-07 34.3 6.9 100 155-276 162-262 (335) 26 2ekl_A D-3-phosphoglycerate de 96.0 0.012 4.9E-07 36.0 5.5 93 155-265 139-231 (313) 27 3d4o_A Dipicolinate synthase s 95.9 0.012 5E-07 35.9 5.3 95 150-265 147-243 (293) 28 2j6i_A Formate dehydrogenase; 95.9 0.016 6.8E-07 35.0 6.0 96 155-266 161-257 (364) 29 2dbq_A Glyoxylate reductase; D 95.8 0.016 6.7E-07 35.1 5.7 91 155-264 147-238 (334) 30 2o4c_A Erythronate-4-phosphate 95.7 0.016 6.8E-07 35.0 5.2 129 127-277 83-215 (380) 31 3kbo_A Glyoxylate/hydroxypyruv 95.6 0.036 1.5E-06 32.8 6.8 92 154-264 135-227 (315) 32 1qp8_A Formate dehydrogenase; 95.6 0.054 2.3E-06 31.6 7.7 87 155-264 121-208 (303) 33 3oet_A Erythronate-4-phosphate 95.5 0.02 8.5E-07 34.4 5.2 128 125-277 84-218 (381) 34 3evt_A Phosphoglycerate dehydr 95.4 0.04 1.7E-06 32.5 6.4 93 155-265 134-226 (324) 35 1j4a_A D-LDH, D-lactate dehydr 95.3 0.04 1.7E-06 32.4 6.4 92 155-266 143-235 (333) 36 2w2k_A D-mandelate dehydrogena 95.2 0.042 1.8E-06 32.3 6.1 95 155-265 160-255 (348) 37 3d64_A Adenosylhomocysteinase; 95.1 0.067 2.8E-06 31.0 6.8 100 155-279 274-375 (494) 38 2cuk_A Glycerate dehydrogenase 95.0 0.073 3.1E-06 30.8 6.9 86 155-264 141-227 (311) 39 3p2o_A Bifunctional protein fo 94.9 0.2 8.5E-06 27.9 9.6 191 5-224 3-210 (285) 40 3ce6_A Adenosylhomocysteinase; 94.9 0.077 3.2E-06 30.6 6.7 100 155-279 271-372 (494) 41 1ygy_A PGDH, D-3-phosphoglycer 94.8 0.051 2.2E-06 31.8 5.6 93 155-266 139-232 (529) 42 3ba1_A HPPR, hydroxyphenylpyru 94.7 0.14 5.8E-06 29.0 7.6 90 155-265 161-250 (333) 43 1sc6_A PGDH, D-3-phosphoglycer 94.6 0.11 4.8E-06 29.5 7.1 99 155-276 142-240 (404) 44 3hg7_A D-isomer specific 2-hyd 94.6 0.042 1.8E-06 32.3 4.8 63 155-222 137-199 (324) 45 2pi1_A D-lactate dehydrogenase 94.6 0.083 3.5E-06 30.4 6.2 99 155-276 138-237 (334) 46 1v8b_A Adenosylhomocysteinase; 94.5 0.087 3.7E-06 30.3 6.2 99 155-278 254-354 (479) 47 3n58_A Adenosylhomocysteinase; 94.2 0.11 4.7E-06 29.6 6.2 100 155-279 244-345 (464) 48 3l07_A Bifunctional protein fo 94.0 0.32 1.3E-05 26.6 10.4 191 5-224 3-211 (285) 49 3c24_A Putative oxidoreductase 93.9 0.054 2.3E-06 31.6 4.2 36 42-79 7-42 (286) 50 3gg9_A D-3-phosphoglycerate de 93.9 0.06 2.5E-06 31.3 4.3 91 155-263 157-248 (352) 51 1dxy_A D-2-hydroxyisocaproate 93.8 0.32 1.3E-05 26.6 8.0 100 155-277 142-241 (333) 52 3gvp_A Adenosylhomocysteinase 93.5 0.22 9.3E-06 27.6 6.7 103 154-281 216-320 (435) 53 3gvx_A Glycerate dehydrogenase 93.4 0.23 9.6E-06 27.6 6.6 88 155-263 119-206 (290) 54 3h9u_A Adenosylhomocysteinase; 92.7 0.15 6.5E-06 28.7 4.9 128 123-278 171-308 (436) 55 1b0a_A Protein (fold bifunctio 92.6 0.54 2.3E-05 25.1 9.4 156 49-224 38-209 (288) 56 2d0i_A Dehydrogenase; structur 92.5 0.27 1.1E-05 27.1 6.0 64 155-223 143-206 (333) 57 2uyy_A N-PAC protein; long-cha 92.0 0.074 3.1E-06 30.7 2.5 119 69-194 50-194 (316) 58 3k5p_A D-3-phosphoglycerate de 92.0 0.47 2E-05 25.5 6.7 89 156-265 154-243 (416) 59 1xdw_A NAD+-dependent (R)-2-hy 90.2 0.95 4E-05 23.6 6.9 91 155-265 143-233 (331) 60 1mv8_A GMD, GDP-mannose 6-dehy 90.1 0.079 3.3E-06 30.6 1.2 73 154-227 309-400 (436) 61 2c2x_A Methylenetetrahydrofola 88.9 1.2 4.9E-05 23.0 10.2 176 51-267 39-233 (281) 62 3gg2_A Sugar dehydrogenase, UD 88.3 0.44 1.9E-05 25.7 4.0 74 154-228 314-397 (450) 63 2q3e_A UDP-glucose 6-dehydroge 88.3 0.38 1.6E-05 26.1 3.6 74 153-227 324-419 (467) 64 2f1k_A Prephenate dehydrogenas 88.1 0.4 1.7E-05 26.0 3.7 20 176-195 151-170 (279) 65 3dfz_A SIRC, precorrin-2 dehyd 87.3 1 4.2E-05 23.4 5.3 81 141-224 14-98 (223) 66 3g79_A NDP-N-acetyl-D-galactos 86.8 0.83 3.5E-05 23.9 4.7 69 153-227 348-425 (478) 67 3d1l_A Putative NADP oxidoredu 86.7 0.39 1.6E-05 26.1 3.0 20 173-192 149-168 (266) 68 1u8x_X Maltose-6'-phosphate gl 85.7 0.43 1.8E-05 25.8 2.7 135 10-149 60-210 (472) 69 1s6y_A 6-phospho-beta-glucosid 83.8 2.2 9.1E-05 21.2 5.8 70 90-165 131-202 (450) 70 3l6d_A Putative oxidoreductase 83.7 0.32 1.4E-05 26.6 1.4 86 103-192 66-169 (306) 71 3cky_A 2-hydroxymethyl glutara 83.6 0.52 2.2E-05 25.2 2.4 88 98-194 57-168 (301) 72 2h78_A Hibadh, 3-hydroxyisobut 83.4 0.62 2.6E-05 24.8 2.7 95 93-194 51-167 (302) 73 1vpd_A Tartronate semialdehyde 82.3 0.47 2E-05 25.5 1.8 96 93-194 53-169 (299) 74 2dpo_A L-gulonate 3-dehydrogen 81.1 2.4 0.0001 20.9 5.0 18 12-29 34-51 (319) 75 2o3j_A UDP-glucose 6-dehydroge 81.1 1.1 4.6E-05 23.2 3.3 74 153-227 330-423 (481) 76 3d0o_A L-LDH 1, L-lactate dehy 80.9 1.9 7.8E-05 21.7 4.4 11 63-73 22-32 (317) 77 1f0y_A HCDH, L-3-hydroxyacyl-C 80.1 2.2 9.3E-05 21.2 4.6 17 12-28 43-59 (302) 78 3dcm_X AdoMet, uncharacterized 79.4 1.9 8.2E-05 21.5 4.1 48 173-220 31-100 (192) 79 3dfu_A Uncharacterized protein 79.3 2 8.3E-05 21.5 4.1 17 178-194 119-135 (232) 80 2ahr_A Putative pyrroline carb 79.3 0.94 4E-05 23.6 2.5 16 103-119 61-76 (259) 81 2gf2_A Hibadh, 3-hydroxyisobut 78.9 0.65 2.7E-05 24.6 1.5 98 91-194 46-164 (296) 82 1yb4_A Tartronic semialdehyde 78.3 1.8 7.5E-05 21.8 3.6 84 103-195 59-167 (295) 83 1np3_A Ketol-acid reductoisome 78.2 1.7 7E-05 22.0 3.5 71 42-117 12-87 (338) 84 3dzb_A Prephenate dehydrogenas 77.4 1.3 5.5E-05 22.7 2.7 92 103-195 66-183 (317) 85 2gcg_A Glyoxylate reductase/hy 77.2 3.6 0.00015 19.8 6.3 92 156-264 153-244 (330) 86 1ldn_A L-lactate dehydrogenase 76.7 2.3 9.5E-05 21.1 3.8 10 138-147 87-96 (316) 87 1a4i_A Methylenetetrahydrofola 75.9 3.9 0.00016 19.6 11.2 191 8-224 5-215 (301) 88 1evy_A Glycerol-3-phosphate de 75.5 2.8 0.00012 20.5 4.0 15 52-66 90-104 (366) 89 3mog_A Probable 3-hydroxybutyr 73.8 4.4 0.00018 19.3 5.5 21 11-31 32-52 (483) 90 3c7a_A Octopine dehydrogenase; 73.8 1.8 7.5E-05 21.8 2.6 21 92-114 74-94 (404) 91 1obb_A Maltase, alpha-glucosid 72.9 3.9 0.00017 19.6 4.2 137 10-149 35-189 (480) 92 3k96_A Glycerol-3-phosphate de 72.3 4.1 0.00017 19.4 4.2 111 66-194 66-183 (356) 93 1vjt_A Alpha-glucosidase; TM07 72.3 2.2 9E-05 21.3 2.8 135 10-147 46-206 (483) 94 1dlj_A UDP-glucose dehydrogena 71.7 3 0.00013 20.3 3.4 58 166-226 325-382 (402) 95 3doj_A AT3G25530, dehydrogenas 71.0 2.2 9.4E-05 21.1 2.6 98 92-195 68-186 (310) 96 2hk9_A Shikimate dehydrogenase 70.3 5.2 0.00022 18.7 7.8 170 51-227 16-197 (275) 97 1i36_A Conserved hypothetical 69.0 1.7 7.1E-05 21.9 1.6 15 103-117 57-71 (264) 98 3g0o_A 3-hydroxyisobutyrate de 67.9 2.7 0.00011 20.6 2.5 39 103-144 65-111 (303) 99 3oj0_A Glutr, glutamyl-tRNA re 66.4 1.7 7E-05 22.0 1.2 68 155-225 18-88 (144) 100 1pjq_A CYSG, siroheme synthase 65.3 4.9 0.00021 18.9 3.4 88 95-191 236-328 (457) 101 3nep_X Malate dehydrogenase; h 65.1 6.3 0.00027 18.2 3.9 20 286-305 289-308 (314) 102 3k6j_A Protein F01G10.3, confi 64.3 6.8 0.00029 18.0 4.9 10 158-167 223-232 (460) 103 2hmt_A YUAA protein; RCK, KTN, 63.5 2.6 0.00011 20.7 1.7 67 154-223 2-76 (144) 104 1bg6_A N-(1-D-carboxylethyl)-L 63.1 3.6 0.00015 19.8 2.4 46 67-114 42-87 (359) 105 1smk_A Malate dehydrogenase, g 62.6 3 0.00012 20.4 1.9 25 137-161 125-150 (326) 106 1mld_A Malate dehydrogenase; o 61.4 7.6 0.00032 17.7 3.8 25 137-161 117-142 (314) 107 3e18_A Oxidoreductase; dehydro 61.0 4.6 0.00019 19.1 2.6 46 48-95 67-112 (359) 108 7mdh_A Protein (malate dehydro 60.7 8 0.00033 17.6 4.9 27 287-313 338-364 (375) 109 2pv7_A T-protein [includes: ch 60.3 7.7 0.00032 17.7 3.7 126 58-195 31-169 (298) 110 1yrl_A Ketol-acid reductoisome 60.2 3.3 0.00014 20.0 1.8 77 34-115 25-111 (491) 111 3c1a_A Putative oxidoreductase 59.9 6.5 0.00027 18.1 3.2 16 60-75 81-96 (315) 112 2z04_A Phosphoribosylaminoimid 59.2 4.8 0.0002 19.0 2.4 17 65-81 17-33 (365) 113 2i76_A Hypothetical protein; N 58.8 2.2 9.4E-05 21.2 0.7 21 173-193 135-155 (276) 114 3e9m_A Oxidoreductase, GFO/IDH 58.6 8.1 0.00034 17.5 3.5 24 287-310 302-325 (330) 115 3l49_A ABC sugar (ribose) tran 58.0 8.8 0.00037 17.3 5.0 83 44-131 3-92 (291) 116 1ecf_A Glutamine phosphoribosy 57.5 9 0.00038 17.2 5.3 90 106-198 297-403 (504) 117 1a5z_A L-lactate dehydrogenase 56.4 8.4 0.00036 17.4 3.3 13 298-310 301-313 (319) 118 2v6b_A L-LDH, L-lactate dehydr 55.9 7.9 0.00033 17.6 3.1 19 91-109 96-114 (304) 119 3fef_A Putative glucosidase LP 55.8 7.2 0.0003 17.8 2.9 58 90-148 125-184 (450) 120 1ur5_A Malate dehydrogenase; o 55.6 9.7 0.00041 17.0 4.2 22 123-147 71-92 (309) 121 1meo_A Phosophoribosylglycinam 54.4 10 0.00042 16.9 4.7 37 93-130 70-106 (209) 122 2pju_A Propionate catabolism o 54.0 4.6 0.00019 19.1 1.7 80 98-193 59-138 (225) 123 1x13_A NAD(P) transhydrogenase 53.3 11 0.00044 16.8 4.3 95 154-263 168-289 (401) 124 1gpj_A Glutamyl-tRNA reductase 52.9 11 0.00045 16.7 4.5 75 149-226 158-236 (404) 125 2gci_A Probable alpha-methylac 51.8 11 0.00047 16.6 4.5 30 140-169 130-159 (360) 126 2b0j_A 5,10-methenyltetrahydro 50.3 5.6 0.00024 18.5 1.6 24 201-224 125-148 (358) 127 1x7d_A Ornithine cyclodeaminas 48.5 12 0.0005 16.4 3.1 65 157-224 128-201 (350) 128 1edz_A 5,10-methylenetetrahydr 47.8 13 0.00054 16.2 9.4 169 48-224 40-252 (320) 129 1fmt_A Methionyl-tRNA FMet for 47.7 13 0.00054 16.2 6.8 74 48-130 28-108 (314) 130 2i99_A MU-crystallin homolog; 47.2 13 0.00055 16.2 6.0 102 158-282 135-243 (312) 131 2hjr_A Malate dehydrogenase; m 45.9 14 0.00057 16.0 3.9 26 121-149 81-106 (328) 132 1pjc_A Protein (L-alanine dehy 44.4 11 0.00046 16.6 2.4 95 154-263 163-264 (361) 133 3fr7_A Putative ketol-acid red 43.5 9.6 0.0004 17.0 1.9 14 42-55 49-63 (525) 134 1q7e_A Hypothetical protein YF 43.4 15 0.00063 15.8 3.0 11 140-150 145-155 (428) 135 3kcq_A Phosphoribosylglycinami 43.3 15 0.00063 15.8 3.8 15 178-192 130-144 (215) 136 3euw_A MYO-inositol dehydrogen 43.2 15 0.00063 15.8 3.4 17 287-303 307-323 (344) 137 2q5c_A NTRC family transcripti 43.2 9.5 0.0004 17.1 1.9 83 95-194 45-127 (196) 138 3hhp_A Malate dehydrogenase; M 43.0 15 0.00064 15.8 3.7 25 137-161 118-143 (312) 139 3o1l_A Formyltetrahydrofolate 42.4 15 0.00065 15.7 3.0 141 132-311 112-293 (302) 140 3lou_A Formyltetrahydrofolate 41.9 16 0.00066 15.7 3.4 144 132-313 102-285 (292) 141 1b8p_A Protein (malate dehydro 41.0 16 0.00068 15.6 5.0 42 138-184 134-175 (329) 142 2zqz_A L-LDH, L-lactate dehydr 40.9 16 0.00068 15.6 3.9 26 138-166 126-151 (326) 143 3obi_A Formyltetrahydrofolate 40.8 16 0.00069 15.5 3.4 141 132-309 96-276 (288) 144 2vhw_A Alanine dehydrogenase; 40.4 12 0.0005 16.4 2.0 95 154-263 164-265 (377) 145 1x0v_A GPD-C, GPDH-C, glycerol 39.8 17 0.00071 15.4 3.8 87 92-193 82-175 (354) 146 1up7_A 6-phospho-beta-glucosid 39.7 17 0.00071 15.4 4.4 134 10-149 34-180 (417) 147 1hr8_O COX4, cytochrome C oxid 37.4 6 0.00025 18.4 0.1 13 52-64 8-20 (26) 148 3e8x_A Putative NAD-dependent 36.7 19 0.00079 15.1 3.3 12 184-195 162-173 (236) 149 3l4e_A Uncharacterized peptida 36.5 17 0.00073 15.4 2.4 17 63-79 48-64 (206) 150 2ldx_A APO-lactate dehydrogena 34.6 15 0.00062 15.8 1.7 79 59-149 31-111 (331) 151 3ktd_A Prephenate dehydrogenas 34.6 18 0.00077 15.2 2.2 131 62-195 21-190 (341) 152 3kux_A Putative oxidoreductase 34.1 21 0.00087 14.9 3.6 15 61-75 80-94 (352) 153 2g04_A Probable fatty-acid-COA 33.7 21 0.00088 14.8 5.9 32 138-169 130-161 (359) 154 1zcj_A Peroxisomal bifunctiona 32.6 22 0.00092 14.7 7.3 26 96-121 134-160 (463) 155 3on5_A BH1974 protein; structu 32.6 22 0.00092 14.7 2.4 35 158-195 199-233 (362) 156 3ic5_A Putative saccharopine d 32.3 15 0.00065 15.7 1.5 64 158-224 5-76 (118) 157 1lu9_A Methylene tetrahydromet 32.0 21 0.00089 14.8 2.2 105 118-224 77-195 (287) 158 3db2_A Putative NADPH-dependen 31.9 22 0.00094 14.7 2.3 25 52-76 70-94 (354) 159 1yj8_A Glycerol-3-phosphate de 31.2 23 0.00097 14.6 3.5 13 103-115 104-116 (375) 160 2bw0_A 10-FTHFDH, 10-formyltet 30.5 24 0.001 14.5 3.5 77 48-130 47-126 (329) 161 3p7m_A Malate dehydrogenase; p 29.7 24 0.001 14.4 4.1 10 138-147 86-95 (321) 162 1qo0_D AMIR; binding protein, 29.1 24 0.00099 14.5 2.0 12 64-75 28-39 (196) 163 1leh_A Leucine dehydrogenase; 29.0 25 0.0011 14.3 2.6 38 154-194 169-206 (364) 164 3hn7_A UDP-N-acetylmuramate-L- 27.5 27 0.0011 14.2 2.8 10 101-110 215-224 (524) 165 2eq5_A 228AA long hypothetical 27.4 25 0.0011 14.3 1.9 41 91-132 64-104 (228) 166 3moi_A Probable dehydrogenase; 27.2 18 0.00077 15.2 1.2 53 44-96 60-112 (387) 167 3k92_A NAD-GDH, NAD-specific g 27.0 27 0.0011 14.1 2.1 47 142-191 201-251 (424) 168 2vjq_A Formyl-coenzyme A trans 26.5 28 0.0012 14.0 3.2 12 95-107 83-94 (428) 169 2yyy_A Glyceraldehyde-3-phosph 26.2 28 0.0012 14.0 2.2 11 102-112 81-91 (343) 170 3k5i_A Phosphoribosyl-aminoimi 25.8 29 0.0012 14.0 5.7 44 64-108 39-92 (403) 171 5mdh_A Malate dehydrogenase; o 25.5 29 0.0012 13.9 4.6 22 138-161 130-151 (333) 172 6ldh_A M4 APO-lactate dehydrog 24.6 30 0.0013 13.8 4.1 22 59-80 33-54 (330) 173 3nva_A CTP synthase; rossman f 24.1 31 0.0013 13.8 6.8 100 90-189 192-329 (535) 174 3e82_A Putative oxidoreductase 24.1 31 0.0013 13.8 2.6 21 56-76 75-95 (364) 175 2qv7_A Diacylglycerol kinase D 24.0 27 0.0011 14.1 1.6 88 42-136 20-119 (337) 176 2eez_A Alanine dehydrogenase; 23.8 20 0.00083 15.0 0.9 95 154-263 162-263 (369) 177 2wtb_A MFP2, fatty acid multif 23.4 32 0.0013 13.7 6.4 139 138-280 281-474 (725) 178 1c1d_A L-phenylalanine dehydro 23.1 32 0.0014 13.6 11.6 175 19-226 52-240 (355) 179 1txg_A Glycerol-3-phosphate de 22.7 33 0.0014 13.6 3.5 12 103-114 72-83 (335) 180 1jkx_A GART;, phosphoribosylgl 22.2 33 0.0014 13.5 3.8 13 97-109 74-86 (212) 181 1omo_A Alanine dehydrogenase; 21.9 34 0.0014 13.5 5.3 103 158-282 125-234 (322) 182 1oao_A CODH, carbon monoxide d 21.8 34 0.0014 13.5 3.9 65 124-192 540-606 (674) 183 1ff9_A Saccharopine reductase; 21.3 35 0.0015 13.4 3.1 27 117-145 109-135 (450) 184 3ive_A Nucleotidase; structura 21.0 35 0.0015 13.4 2.8 73 85-165 71-147 (509) 185 1vb3_A Threonine synthase; PLP 20.7 36 0.0015 13.3 1.7 56 6-72 59-115 (428) 186 3llv_A Exopolyphosphatase-rela 20.6 35 0.0015 13.4 1.6 22 170-191 15-36 (141) 187 2g1u_A Hypothetical protein TM 20.4 36 0.0015 13.3 3.3 65 157-224 18-91 (155) 188 3ec7_A Putative dehydrogenase; 20.4 36 0.0015 13.3 2.9 18 287-304 322-339 (357) 189 3exa_A TRNA delta(2)-isopenten 20.2 37 0.0015 13.3 4.4 96 45-147 2-112 (322) No 1 >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 Probab=100.00 E-value=0 Score=635.63 Aligned_cols=298 Identities=33% Similarity=0.461 Sum_probs=275.9 Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC-CCC Q ss_conf 7777741782238999999999999999964420487752128976999960787337899997987613521112-333 Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVINI-NTK 81 (316) Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l-~~~ 81 (316) +|.+||||+++||+++|+..||++|.++|+.+.++. ..++|+||+++++|+|||||||+|||+|+.+|||+++++ +++ T Consensus 2 ~~~~r~~L~i~dls~~ei~~ll~~A~~lk~~~~~~~-~~~~l~gk~v~llF~~pStRTR~SFe~A~~~LGg~~i~~~~~~ 80 (308) T 1ml4_A 2 DWKGRDVISIRDFSKEDIETVLATAERLERELKEKG-QLEYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEAS 80 (308) T ss_dssp CCTTCCBCCGGGCCHHHHHHHHHHHHHHHHHHHHHS-SCCTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEESCGG T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCC T ss_conf 899988565001899999999999999998776068-8776799889998348975378999999997599278667853 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221000100 Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHI 161 (316) Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316) .+++++|||++||++|+|+| +|+|++|++.++.+.++++++++| |||||+|..+||||+|+|++||+|++|+++|+|| T Consensus 81 ~~~~~~~Es~~Dta~vls~~-~D~iviR~~~~~~~~~~a~~~~vP-VINAg~~~~~HPtQ~L~Dl~Ti~e~~g~l~glki 158 (308) T 1ml4_A 81 TSSVKKGESLRDTIKTVEQY-CDVIVIRHPKEGAARLAAEVAEVP-VINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKI 158 (308) T ss_dssp GSGGGGTCCHHHHHHHHTTT-CSEEEEEESSTTHHHHHHHTCSSC-EEEEEETTSCCHHHHHHHHHHHHHHSSCSSSEEE T ss_pred CCCCCCCCCHHHHHHHHHCC-CCEEEEEECHHHHHHHHHHCCCCC-EEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE T ss_conf 12157875099999875314-855999723000589987558976-7757779876807899868617563388357779 Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10355443301334466420134205532775322211-------21234330058456036862210001133123334 Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) +|+||+.|+||+||++.+++.+|+++++++|+++.+.. ..+..+.+++|++++++++|+||+++||.|++... T Consensus 159 ~~vGd~~~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~~~~~~~ 238 (308) T 1ml4_A 159 GLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDE 238 (308) T ss_dssp EEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSH T ss_pred EEECCCCCCHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHCCCCEEECCCHHHHHCCCCEEECCEECCCCCCHH T ss_conf 86458764412888999998769839997964754878899999971983021289899630575220220023445258 Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 4445554202357588999837998599558998768744767976997016868775699999999999778 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~ 307 (316) .++.+++.+||||.++|++|+++++|||||| ||+||+++|+|+|+|+||+||+||+|+|||||+|+||- T Consensus 239 --~~~~~~~~~~~v~~~~l~~a~~~~i~mHcLP--Rg~Ei~~~v~d~~~s~v~~QaeNrl~v~~AlL~~llG~ 307 (308) T 1ml4_A 239 --QEYLKVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGVPVRMALLALVLGV 307 (308) T ss_dssp --HHHHTTTTCCCBCTTGGGGSCTTCEEECCSC--CSSSBCGGGGGSTTBCHHHHHHTHHHHHHHHHHHHHTC T ss_pred --HHHHHHHCCCCCCHHHHHHCCCCCEEECCCC--CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf --9999985066579999971699989969999--97612486657874579999972199999999998676 No 2 >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal- binding, pyrimidine biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus} Probab=100.00 E-value=0 Score=636.66 Aligned_cols=289 Identities=37% Similarity=0.596 Sum_probs=271.8 Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 77417822389999999999999999644204877521289769999607873378999979876135211123333210 Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAM 85 (316) Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~ 85 (316) |||||+++||+++|++.||++|.++|+.+. ...+|+++++|+|||||||+|||+|+++|||++++++++++|+ T Consensus 1 Mr~~l~~~dls~~ei~~ll~~A~~lk~~~~-------~~~~k~~~llF~kpSTRTR~SFe~A~~~LGg~~i~l~~~~~~~ 73 (291) T 3d6n_B 1 MRSLISSLDLTREEVEEILKYAKEFKEGKE-------ETIKASAVLFFSEPSTRTRLSFEKAARELGIETYLVSGSESST 73 (291) T ss_dssp CCCBCCGGGCCHHHHHHHHHHHHHHHTTCC-------CCCCCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEETTTTSC T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHCCH-------HCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCEEECCCCCCCC T ss_conf 987277022999999999999999972620-------0368738999808974389999999998699889677111126 Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEECCC-CCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 133342247999874136714652032-1005542001234211112345663122332222222012221000100103 Q gi|254780300|r 86 KKGENIADTIATLNALRPNIIVIRHPY-SGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC 164 (316) Q Consensus 86 ~kgEs~~Dta~vls~~~~d~iv~R~~~-~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~v 164 (316) +||||++||++|+++|++|++|+|++. +..+.++++++++| |||||+|.++||||+|+|++||+|++|.++|++|+|+ T Consensus 74 ~kgEs~~Dt~~vls~~~~d~iv~R~~~~~~~~~~~a~~~~vp-VINag~~~~~HPtQaLaDl~Ti~e~~g~l~~l~i~~v 152 (291) T 3d6n_B 74 VKGESFFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSLNLR-LVNAGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYV 152 (291) T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEESSCCCSCHHHHHTCSSE-EEEEEETTTBCHHHHHHHHHHHHHHHSCCTTCEEEEE T ss_pred CCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHCCCCC-EEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 678748899997532464389982454420089997327977-8988889776837899879899998398778659999 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCC Q ss_conf 55443301334466420134205532775322211212343300584560368622100011331233344445554202 Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKH 244 (316) Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~ 244 (316) ||+.|+||+||++.+++++|+++++++|+++.|+.....++++++|++++++++|||||++||+|+..++.....++|+. T Consensus 153 GD~~~~~v~~S~~~~~~~~g~~~~~~~P~~~~p~~~~~~~i~~~~d~~~ai~~aDvv~~~~~~~~~~~~~~~~~~~~~~~ 232 (291) T 3d6n_B 153 GDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIWLRLQKERQKENYIPSESSYFK 232 (291) T ss_dssp SCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEECCCCTHHHHTTSSSCHHHHHH T ss_pred ECCCCCHHHHHHHHHHHHCCCEEEEECCHHHCCCCHHHCCEEEECCHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHH T ss_conf 46876689999999998569989998952437465302774897799999854899998244462010556677766788 Q ss_pred CCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 3575889998379985995589987687447679769970168687756999999999997 Q gi|254780300|r 245 VYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305 (316) Q Consensus 245 ~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l 305 (316) +||||.++|+. +++||||||++||+||+++|+|+|+|+||+||+||+|+|||||+|++ T Consensus 233 ~~~v~~~~~~~---~~i~mHcLPa~Rg~Ei~~~V~~~~~s~v~~QaeNrl~~~~AlL~~L~ 290 (291) T 3d6n_B 233 QFGLTKERFEK---VKLYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYKFLW 290 (291) T ss_dssp HHSBCHHHHTT---CCCEECSSCCCBTTTBCGGGSSSTTBCHHHHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHCCC---CCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH T ss_conf 88888986578---99894899999888679768369855799999711999999999986 No 3 >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli K12} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... Probab=100.00 E-value=0 Score=629.61 Aligned_cols=298 Identities=30% Similarity=0.444 Sum_probs=268.2 Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC- Q ss_conf 9777774178223899999999999999996442048775212897699996078733789999798761352111233- Q gi|254780300|r 2 YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT- 80 (316) Q Consensus 2 ~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~- 80 (316) ++|.|||||+++||+++|+..||++|.++|+.+ ..+.|+||+++++|+|||||||+|||+||.+|||++++++. T Consensus 2 n~l~~rh~l~i~dls~~ei~~ll~~A~~lK~~~-----~~~~L~gk~iallF~kpSTRTR~SFe~A~~~LGg~~~~~~~~ 76 (310) T 3csu_A 2 NPLYQKHIISINDLSRDDLNLVLATAAKLKANP-----QPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDS 76 (310) T ss_dssp CTTTTCCBCCGGGCCHHHHHHHHHHHHHHHHSC-----CTTTTTTCEEEEEESSCCHHHHHHHHHHHHTTTCEEEEESCC T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCC T ss_conf 988788858700099999999999999987589-----875578998999862787443999999999919960225766 Q ss_pred -CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC Q ss_conf -3321013334224799987413671465203210055420012342111123456631223322222220122210001 Q gi|254780300|r 81 -KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNL 159 (316) Q Consensus 81 -~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l 159 (316) ..++.+||||++||++|+|+| .|+|++|++.++....++++++.+||||||+|..+||||+|+|++||+|++|+++|+ T Consensus 77 ~~~~~~~kgEs~~Dta~vls~~-~d~iv~R~~~~~~~~~~~~~~~~vPVINag~~~~~HPtQ~LaDl~Ti~e~~g~l~g~ 155 (310) T 3csu_A 77 ANTSLGKKGETLADTISVISTY-VDAIVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNL 155 (310) T ss_dssp -----CCSHHHHHHHHHHHTTT-CSEEEEEESSTTHHHHHHHHCTTCCEEEEEETTSCCHHHHHHHHHHHHHHHSCSSSC T ss_pred CCCCCCCCCCCHHHHHHHHHCC-CCEEEEEECCCHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 4322366875199987665404-760699842201458999837788767677887647188998788787642776898 Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCCCCCC-------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHH Q ss_conf 0010355443301334466420134-205532775322211-------21234330058456036862210001133123 Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMG-ARIRVIAPITLLPKD-------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316) Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g-~~v~~~~P~~~~~~~-------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316) +|+|+||+.||||++|++.+++++| +++++++|+++.|.. ..+..+++++|+++++++||+||+++||.|+. T Consensus 156 kv~~vGd~~~~~v~~S~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~~e~~ 235 (310) T 3csu_A 156 HVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERL 235 (310) T ss_dssp EEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC------ T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEEHHHCCC T ss_conf 79998468777147899999996163738984884137838999999861886533306776424787564200000234 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 3344445554202357588999837998599558998768744767976997016868775699999999999778142 Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQNK 310 (316) Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~~ 310 (316) ... ...++...||||+++|+.++++++|||||| ||+||+++|+|+|+|+||+|||||+|+|||||+++|+.+-. T Consensus 236 ~~~---~~~~~~~~~~v~~~~l~~a~~~~i~mHcLP--Rg~EV~~~V~d~p~S~v~~QaeNrl~~qkAlL~~ll~~~~~ 309 (310) T 3csu_A 236 DPS---EYANVKAQFVLRASDLHNAKANMKVLHPLP--RVDEIATDVDKTPHAWYFQQAGNGIFARQALLALVLNRDLV 309 (310) T ss_dssp --------------CCBCGGGGTTCCTTCEEECCSC--CSSSBCHHHHTSTTBCHHHHHHTHHHHHHHHHHHHHSSCCC T ss_pred CCH---HHHHHHHHHHHHHHHHHCCCCCCEEEECCC--CCCEECHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 521---367788888867999963798939940899--96852287655886529999971399999999999785763 No 4 >2at2_A Aspartate carbamoyltransferase; 3.00A {Bacillus subtilis} SCOP: c.78.1.1 c.78.1.1 Probab=100.00 E-value=0 Score=630.81 Aligned_cols=298 Identities=36% Similarity=0.560 Sum_probs=278.2 Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 77417822389999999999999999644204877521289769999607873378999979876135211123333210 Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAM 85 (316) Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~ 85 (316) |||||+++||+++|++.||++|.++|+++. .+.|+||+++++|+|||||||+|||+|+.+|||+++++++.++++ T Consensus 1 Mkh~lsi~dls~~ei~~ll~~A~~lK~~~~-----~~~L~gK~v~llF~~pSTRTR~SFe~A~~~LGg~~i~l~~~~~~~ 75 (300) T 2at2_A 1 MKHLTTMSELSTEEIKDLLQTAQELKSGKT-----DNQLTGKFAANLFFEPSTRTRFSFEVAEKKLGMNVLNLDGTSTSV 75 (300) T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHCCCC-----CCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCCC T ss_conf 988386011899999999999999875898-----776899858998717970489999999998198599960001136 Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECC Q ss_conf 13334224799987413671465203210055420012342111123456631223322222220122210001001035 Q gi|254780300|r 86 KKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICG 165 (316) Q Consensus 86 ~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vG 165 (316) ++||+++||++++++|++|++++|++.++.+.++++++++| |||||+|..+||||+|+|++||+|.+|+++|++|+|+| T Consensus 76 ~~gEs~~dt~~~l~~~~~d~iv~r~~~~~~~~~~a~~s~vP-VINAg~~~~~HPtQaLaD~~Ti~e~~g~~~gl~ia~vG 154 (300) T 2at2_A 76 QKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIP-ILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHG 154 (300) T ss_pred CCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHCCCCCC-EEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCC T ss_conf 68876899999633101503678523201688864036874-22078887668579998899999987602798220257 Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCC Q ss_conf 54433013344664201342055327753222112123433005845603686221000113312333444455542023 Q gi|254780300|r 166 DILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHV 245 (316) Q Consensus 166 D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~ 245 (316) |+.|+||++|++.++..+|+++.+++|+++.+... ...++.+++++++++|++|+++|+.|++.+. ...+++..+ T Consensus 155 D~~~~~v~~s~~~~~~~~~~~~~~~~p~~~~~~~~---~~~~~~~~~~a~~~aDvv~~~~~~~~~~~~~--~~~~~~~~~ 229 (300) T 2at2_A 155 DIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEEN---TFGTYVSMDEAVESSDVVMLLRIQNERHQSA--VSQEGYLNK 229 (300) T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECHHHHCCCHH---HCCEEECHHHHHHHCCEEEEEEECCCCCCCH--HHHHHHHHH T ss_conf 86421568999999883598289958036285422---1343633878542068677632112112211--246888762 Q ss_pred CCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 575889998379985995589987687447679769970168687756999999999997781422201 Q gi|254780300|r 246 YSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQNKITQK 314 (316) Q Consensus 246 ~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~~~~~~ 314 (316) ||||.++|++++++++||||||+|||+||+++|+|+|+|+||+||+||+|+|||||+|+|+++.+..++ T Consensus 230 ~~v~~~~l~~a~~~ai~mHcLP~~rg~EV~~~V~d~p~s~v~~QAeNrl~~~~AlL~~~L~~~~~~~~~ 298 (300) T 2at2_A 230 YGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQCALQTNVKRGEA 298 (300) T ss_pred HCCHHHHHHHCCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHCCHHCCCC T ss_conf 003299997279998997998888996318867269855499999662999999999998521121244 No 5 >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* Probab=100.00 E-value=0 Score=622.84 Aligned_cols=301 Identities=21% Similarity=0.267 Sum_probs=276.8 Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 97777741782238999999999999999964420487752128976999960787337899997987613521112333 Q gi|254780300|r 2 YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTK 81 (316) Q Consensus 2 ~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316) .+|.|||||+++||+++||+.||++|.++|..+... ...++|+||+++++|+|||||||+|||+|+++|||++++++++ T Consensus 1 ~~~~~khlL~i~dls~~ei~~ll~~A~~lk~~~~~~-~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~ 79 (333) T 1duv_G 1 SGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSG-KEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPS 79 (333) T ss_dssp CCCTTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHTT-CCCCSCTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEECSS T ss_pred CCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCC T ss_conf 989987816600189999999999999998556458-8665579998999965897235999999999779818755810 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC--CCCC Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221--0001 Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGK--ISNL 159 (316) Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~--l~~l 159 (316) +|+++||||++||++|+++| +|+||+|++.++.+.++++++++| |||||++ ++||||+|+|++||+|++|. .+++ T Consensus 80 ~ss~~kgEsl~Dt~~~ls~y-~D~iv~R~~~~~~~~~~a~~~~vP-VIN~~~~-~~HPtQaL~Dl~Ti~e~~~~~~~~~~ 156 (333) T 1duv_G 80 GSQIGHKESIKDTARVLGRM-YDGIQYRGYGQEIVETLAEYASVP-VWNGLTN-EFHPTQLLADLLTMQEHLPGKAFNEM 156 (333) T ss_dssp SSCBTTTBCHHHHHHHHTTT-CSEEEEECSCHHHHHHHHHHHSSC-EEESCCS-SCCHHHHHHHHHHHHHHSTTCCGGGC T ss_pred CCCCCCCCCHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHCCCC-EEECCCC-CCCHHHHHHHHHHHHHHHHCCCCCCE T ss_conf 01135663057799886504-867998354366799999757888-8979999-87747999989999999732445550 Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECC Q ss_conf 0010355443301334466420134205532775322211-----------21234330058456036862210001133 Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQ 228 (316) Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316) +++|+||. ++||++|++.+++++|+++++++|+++.|.. ..+..+++++|+++++++|||||+++||+ T Consensus 157 ~i~~~~~~-~~~v~~s~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvyt~~~~~ 235 (333) T 1duv_G 157 TLVYAGDA-RNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVS 235 (333) T ss_dssp EEEEESCT-TSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSC T ss_pred EEEECCCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHCCCEEEEEEEEE T ss_conf 58861765-43201258888876397179963765587678999999998762986798638999961698300346785 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHH-CCCCCEEECCCC------------------CCCCCCCCHHHHCCCCCHHHHH Q ss_conf 123334444555420235758899983-799859955899------------------8768744767976997016868 Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKY-AKKDALVMHPGP------------------INRNYEISSSVADGSQSIIQYQ 289 (316) Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~-a~~~ai~mHcLP------------------~~Rg~Ev~~~v~d~~~s~v~~Q 289 (316) |+.......+..+++.+||||.++|+. ++++++|||||| +|||+||++||+|+|+|+||+| T Consensus 236 ~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~~i~MHpLP~~~~~~~~~~~~~~~~~pv~rg~EI~~~V~d~~~s~i~~Q 315 (333) T 1duv_G 236 MGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQ 315 (333) T ss_dssp TTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCCSSCSHHHHHHHHHTTCCSBSSBBHHHHTSTTBCHHHH T ss_pred CHHHHHHHHHHHHHHCCCEECHHHHHHHCCCCEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCEECHHHHCCCCCHHHHH T ss_conf 02222235666665116378799998647999499599987751011223101034688787586588857875589999 Q ss_pred HHHHHHHHHHHHHHHHCC Q ss_conf 775699999999999778 Q gi|254780300|r 290 VEMGVAVRMAIIKELLEN 307 (316) Q Consensus 290 a~Nrl~~~~AlL~~~l~~ 307 (316) |+||+|+|||||.++|+. T Consensus 316 a~Ngl~vr~AlL~~~l~k 333 (333) T 1duv_G 316 AENRMHTIKAVMVATLSK 333 (333) T ss_dssp HHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHCC T ss_conf 871299999999998577 No 6 >2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, pyrimidine biosynthesis, thermostability; 2.80A {Methanococcus jannaschii} PDB: 3e2p_A Probab=100.00 E-value=0 Score=624.74 Aligned_cols=295 Identities=33% Similarity=0.490 Sum_probs=269.9 Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC-CCCCC Q ss_conf 77417822389999999999999999644204877521289769999607873378999979876135211123-33321 Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ-TKNSA 84 (316) Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~-~~~s~ 84 (316) |||||+++||+++||..||++|.++|+.+.... ..+.|+||+++++|+|||||||+|||+|+.+|||++++++ .++++ T Consensus 1 Mkh~l~~~dls~~ei~~ll~~A~~lK~~~~~~~-~~~~L~gk~vallF~kpStRTR~SFe~A~~~LGg~~i~l~~~~~s~ 79 (306) T 2rgw_A 1 MKHLISMKDIGKEEILEILDEARKMEELLNTKR-PLKLLEGKILATVFYEPSTRTRLSFETAMKRLGGEVITMTDLKSSS 79 (306) T ss_dssp CCCBCCGGGCCHHHHHHHHHHHHHHHHHHHTTS-CCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECCSSTTT T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 988477000999999999999999988760699-7744699989998647875068899999998599621255431133 Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 01333422479998741367146520321005542001234211112345663122332222222012221000100103 Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC 164 (316) Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~v 164 (316) +++||+++||++|+|+| +|+|++|++.++.+.++++++++| |||||+|..+||||+|+|++||+|++|+++|++|+|+ T Consensus 80 ~~~~Es~~Dta~vls~~-~d~iviR~~~~~~~~~~a~~~~vP-VINAg~~~~~HP~QaLaDl~Ti~E~~g~l~glki~~v 157 (306) T 2rgw_A 80 VAKGESLIDTIRVISGY-ADIIVLRHPSEGAARLASEYSQVP-IINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFV 157 (306) T ss_dssp TTTTCCHHHHHHHHHHH-CSEEEEECSSTTHHHHHHHHCSSC-EEECC----CCHHHHHHHHHHHHHHHSCSSSCEEEEE T ss_pred CCCCCCHHHHHHHHCCC-CCEEEEECCCCCCCHHHHHCCCCC-EEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 56871499999661446-856999722233135778627762-4527888766818999989999998588558889998 Q ss_pred CCCCCCCHHHHHHHHHHCC-CCEEEECCCCCCCCC-C------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHH Q ss_conf 5544330133446642013-420553277532221-1------2123433005845603686221000113312333444 Q gi|254780300|r 165 GDILHSRVARSDIMLLNTM-GARIRVIAPITLLPK-D------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLI 236 (316) Q Consensus 165 GD~~~~~v~~S~~~~~~~~-g~~v~~~~P~~~~~~-~------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~ 236 (316) ||+.||||+||++.+++.+ |+++++++|+++.+. . ..+..+.++++++++++++||||+++||+|++.+. T Consensus 158 GD~~~~~v~~S~~~~~~~~~~~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aDvv~~~~~~~e~~~~~-- 235 (306) T 2rgw_A 158 GDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDP-- 235 (306) T ss_dssp SCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESSGGGCCTTCSEEEECCCCGGGCSSH-- T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHCCCEEEEEHHHHHHHHHHEEEECCCCCCCCCCCH-- T ss_conf 056435317989999998489706986854754756777777623743675002554311110685224322468858-- Q ss_pred HHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 4555420235758899983799859955899876874476797699701686877569999999999977814 Q gi|254780300|r 237 PSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQN 309 (316) Q Consensus 237 ~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~ 309 (316) ..+.+++.+||||.++|+ +++++|||||| ||+||+++|+|+|+|+||+||+||+|+|||||+++|+++. T Consensus 236 ~~~~~~~~~~~v~~~~l~--~~~~i~mHclP--Rg~Ev~~~V~d~p~s~i~~QaeNrl~~~~AiL~~ll~~n~ 304 (306) T 2rgw_A 236 NEYEKVKGSYKIKREYVE--GKKFIIMHPLP--RVDEIDYDVDDLPQAKYFKQSFYGIPVRMAILKKLIEDNE 304 (306) T ss_dssp HHHHHHHHHHCBCHHHHT--TCSCEEECCSC--CSSSBCGGGTTSTTBCHHHHHHHHHHHHHHHHHHHHHTC- T ss_pred HHHHHHHCCHHHHHHHHC--CCCCEEECCCC--CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 899987263788999716--99989959998--8884488773687368999998639999999999972468 No 7 >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} Probab=100.00 E-value=0 Score=623.11 Aligned_cols=299 Identities=23% Similarity=0.259 Sum_probs=274.6 Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211123333 Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316) Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316) .|++||||+++||+++||+.||++|.++|+.+.... ..+.|+||+++++|+|||||||+|||+||.+|||+++++++++ T Consensus 25 ~~~gk~~l~~~d~s~~ei~~Ll~~A~~lK~~~~~~~-~~~~L~gK~v~llF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ 103 (359) T 2w37_A 25 VFQGRSVLAEKDFSAAELEYLIDFGLHLKALKKAGI-PHHYLEGKNIALLFEKSSTRTRSAFTTASIDLGAHPEYLGQND 103 (359) T ss_dssp TTTTCCBCCGGGSCHHHHHHHHHHHHHHHHHHHHTC-CCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTTT T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCC T ss_conf 788988086011899999999999999998875699-8745799989999568971069999999998599689888765 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 21013334224799987413671465203210055420012342111123456631223322222220122210001001 Q gi|254780300|r 83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIA 162 (316) Q Consensus 83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia 162 (316) |+++||||++||++|+|+| +|++|+|++.++.+.++++++++| ||||+++ .+||||+|+|++||+|.+|.++|++++ T Consensus 104 ss~~kgEs~~Dt~~~ls~y-~D~iv~R~~~~~~~~~~a~~~~vP-vIN~~~~-~~HPtQaL~Dl~Ti~e~~g~l~~~~i~ 180 (359) T 2w37_A 104 IQLGKKESTSDTAKVLGSM-FDGIEFRGFKQSDAEILARDSGVP-VWNGLTD-EWHPTQMLADFMTVKENFGKLQGLTLT 180 (359) T ss_dssp CCTTTSSCHHHHHHHHHHH-CSEEEEESSCHHHHHHHHHHSSSC-EEEEECS-SCCHHHHHHHHHHHHHHHSCCTTCEEE T ss_pred CCCCCCHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHHCCCC-EECCCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 6577742288999986404-644655155055699998614885-6657777-457899999999999983963575599 Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECCHHH Q ss_conf 03554433013344664201342055327753222112-----------1234330058456036862210001133123 Q gi|254780300|r 163 ICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316) Q Consensus 163 ~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316) |+||. ++||++|++.+++++|+++++++|+++.|... .+..+++++|++||+++|||||+++||+|+. T Consensus 181 ~vgd~-~~~v~~S~~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~eal~~aDvIyt~~w~~~~~ 259 (359) T 2w37_A 181 FMGDG-RNNVANSLLVTGAILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGE 259 (359) T ss_dssp EESCT-TSHHHHHHHHHHHHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTC T ss_pred EECCC-CCCCCCCHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEECCEEECCC T ss_conf 98688-65715568999864699899957833488688999999999973986999789999974699999754763144 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHC---CCCCEEECCCCCCCCC-----------------CCCHHHHCCCCCHHHHHHH Q ss_conf 3344445554202357588999837---9985995589987687-----------------4476797699701686877 Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYA---KKDALVMHPGPINRNY-----------------EISSSVADGSQSIIQYQVE 291 (316) Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a---~~~ai~mHcLP~~Rg~-----------------Ev~~~v~d~~~s~v~~Qa~ 291 (316) ... .+..+++.+||||.++|+++ +++++||||||++||. ||+++|+|+|+|+||+||+ T Consensus 260 ~~~--~~~~~~~~~y~v~~~~~~~~~~a~~~~i~MHpLP~~rg~~~~~~~~~~~~~~~~~~Eis~~V~d~p~s~i~~Qa~ 337 (359) T 2w37_A 260 SNW--EERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVTDEVFTSKYARQFEEAE 337 (359) T ss_dssp TTH--HHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECSCCCCSSCSHHHHHHHHHHCCCCCSBCHHHHTSTTBCHHHHHH T ss_pred CCH--HHHHHHHHCCEECHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHCCCCCCCEECHHHHCCCCCHHHHHHH T ss_conf 346--788988735163499999863899894995999888885433230012113776737658884787415999987 Q ss_pred HHHHHHHHHHHHHHCCC Q ss_conf 56999999999997781 Q gi|254780300|r 292 MGVAVRMAIIKELLENQ 308 (316) Q Consensus 292 Nrl~~~~AlL~~~l~~~ 308 (316) ||+|+|||||+|+||+- T Consensus 338 Ngl~vrmAlL~~~lg~~ 354 (359) T 2w37_A 338 NRMHSIKAMMAATLGNL 354 (359) T ss_dssp HHHHHHHHHHHHHHSCC T ss_pred HHHHHHHHHHHHHHCCC T ss_conf 03999999999996677 No 8 >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Probab=100.00 E-value=0 Score=621.39 Aligned_cols=299 Identities=23% Similarity=0.304 Sum_probs=273.5 Q ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC-CC Q ss_conf 77774178223899999999999999996442048775212897699996078733789999798761352111233-33 Q gi|254780300|r 4 FPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT-KN 82 (316) Q Consensus 4 f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~-~~ 82 (316) ..+||||+++||+++|+..||++|.++|+.+.+. .+.|+||+++++|+|||||||+|||+|+.+|||+++++++ .+ T Consensus 5 ~~~khll~i~dls~~ei~~ll~~A~~~k~~~~~~---~~~l~~k~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~~ 81 (328) T 3grf_A 5 KQTRHLLTISALCPKELAYLIDRALDMKKNPAKY---TARAANKTLLAFFAKPSLRTRVSLETAMTRLGGHAIYYELGAN 81 (328) T ss_dssp CCSCCBSSGGGSCHHHHHHHHHHHHHHHHCGGGG---TTTTTTCEEEEEESSCCHHHHHHHHHHHHHHTCEEEEEEC--- T ss_pred CCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCC T ss_conf 8788715143199999999999999987374445---6556898899996578731699999999985994786673201 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-------C Q ss_conf 210133342247999874136714652032100554200123421111234566312233222222201222-------1 Q gi|254780300|r 83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKG-------K 155 (316) Q Consensus 83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g-------~ 155 (316) |+++||||++||++++++| +|++++|++.++.+.++++++++| |||||++ ++||||+|+|++||+|++| . T Consensus 82 s~~~kgEs~~Dt~~~ls~~-~d~ivvR~~~~~~~~~~a~~~~vp-VINa~~~-~~HPtQaL~Dl~Ti~e~~g~~~~~~~~ 158 (328) T 3grf_A 82 SNVGGKETVQDTAEVFSRM-VDICTARLATKEMMREMAQHASVP-CINALDD-FGHPLQMVCDFMTIKEKFTAAGEFSNG 158 (328) T ss_dssp -------CHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHCSSC-EEESSCS-SCCHHHHHHHHHHHHHHHHHTTCCTTT T ss_pred CCCCCCEEHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHCCCC-EECCCCC-CCCCHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 2367862199999987334-653456525033566777507862-3547765-668269999999999984653334675 Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC---------------CCCCCCCCCCCHHHCCCCCCE Q ss_conf 00010010355443301334466420134205532775322211---------------212343300584560368622 Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD---------------ISNMGVEVFHDMQKGLKNVDV 220 (316) Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~---------------~~~~~~~~~~d~~ea~~~aDv 220 (316) +++++|+|+||. ++||++|++.+++++|+++++++|+++.+.. ..+.++++++|+++++++||| T Consensus 159 ~~~l~i~~~gd~-~~~v~~S~~~~~~~~g~~v~i~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDv 237 (328) T 3grf_A 159 FKGIKFAYCGDS-MNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDV 237 (328) T ss_dssp GGGCCEEEESCC-SSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSE T ss_pred CCCCEEEECCCC-CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHCCCCE T ss_conf 136247632777-6542679999999779969996365335576699999999998763259839999679999617998 Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 10001133123334444555420235758899983799859955899876874476797699701686877569999999 Q gi|254780300|r 221 IMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI 300 (316) Q Consensus 221 v~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~Al 300 (316) ||+++||+|++.++......+|+.+||||.++|++++++++||||||+|||+||+++|+|+|+|+||+||+||+|+|||| T Consensus 238 vy~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHplP~~Rg~EI~~~V~d~~~s~i~~Qa~Ngl~vrmAl 317 (328) T 3grf_A 238 VYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKSVCYDEAGNRLHSAMAV 317 (328) T ss_dssp EEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHHHHTSTTBCHHHHHHHHHHHHHHH T ss_pred EEEEHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 98501120333055579999876424643999963699998989989998880188885798756999997209999999 Q ss_pred HHHHHCCCC Q ss_conf 999977814 Q gi|254780300|r 301 IKELLENQN 309 (316) Q Consensus 301 L~~~l~~~~ 309 (316) |+++|++.. T Consensus 318 L~~lL~~~k 326 (328) T 3grf_A 318 LDFFLHDCK 326 (328) T ss_dssp HHHHHSCCC T ss_pred HHHHHHHCC T ss_conf 999984166 No 9 >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A Probab=100.00 E-value=0 Score=620.14 Aligned_cols=302 Identities=27% Similarity=0.349 Sum_probs=276.2 Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC Q ss_conf 99777774178223899999999999999996442048775212897699996078733789999798761352111233 Q gi|254780300|r 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININT 80 (316) Q Consensus 1 m~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~ 80 (316) +.++.+||||+++||++++++.||++|..+|..+... ...+.|+||+++++|+|||||||+|||+|+.+|||+++++++ T Consensus 2 ~~~l~gk~ll~i~dls~~~i~~ll~~A~~lk~~~~~~-~~~~~L~gk~v~llF~epSTRTR~SFe~A~~~LG~~vi~~~~ 80 (315) T 1pvv_A 2 VVSLAGRDLLCLQDYTAEEIWTILETAKMFKIWQKIG-KPHRLLEGKTLAMIFQKPSTRTRVSFEVAMAHLGGHALYLNA 80 (315) T ss_dssp CCCCTTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHHT-CCCCTTTTCEEEEEESSCCSHHHHHHHHHHHHTTSEEEEEEG T ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECC T ss_conf 9888899827511189999999999999998776458-976336999899984489730589999999976995432042 Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 33210133342247999874136714652032100554200123421111234566312233222222201222100010 Q gi|254780300|r 81 KNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLH 160 (316) Q Consensus 81 ~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ 160 (316) ++|+++||||++||++++++| +|+||+||+.++.+.++++++++| ||| |+|..+||||+|+|++||+|++|.++|++ T Consensus 81 ~~ss~~kgEs~~Dt~~~ls~y-~D~iviR~~~~~~~~~~a~~s~vP-VIN-g~~~~~HPtQaL~Dl~Ti~e~~g~~~~l~ 157 (315) T 1pvv_A 81 QDLQLRRGETIADTARVLSRY-VDAIMARVYDHKDVEDLAKYATVP-VIN-GLSDFSHPCQALADYMTIWEKKGTIKGVK 157 (315) T ss_dssp GGSTTTTTCCHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHCSSC-EEE-EECSSCCHHHHHHHHHHHHHHHSCCTTCE T ss_pred CCCCCCCCCHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHCCCC-EEE-CCCCCCCHHHHHHHHHHHHHHHCCCCCCE T ss_conf 223477886098999997525-887888605710699999867998-896-99986467789876789998728756877 Q ss_pred EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECCH Q ss_conf 0103554433013344664201342055327753222112-----------12343300584560368622100011331 Q gi|254780300|r 161 IAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQE 229 (316) Q Consensus 161 ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~e 229 (316) |+|+|| ++||+||++.+++++|+++++++|+++.|... .+..+++++|++++++++||||++.|.++ T Consensus 158 i~~vGd--~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDvvyt~~~~~~ 235 (315) T 1pvv_A 158 VVYVGD--GNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASM 235 (315) T ss_dssp EEEESC--CCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCS T ss_pred EEEECC--CCCHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEHHHHHC T ss_conf 999678--753156899999984187899889866886899999999998719859997699998557999954188764 Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC Q ss_conf 23334444555420235758899983799859955899876874476797699701686877569999999999977814 Q gi|254780300|r 230 RIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQN 309 (316) Q Consensus 230 ~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~ 309 (316) .. +....+..+|+..||||.++|+.++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||+++||+.. T Consensus 236 ~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~i~mHplP~~Rg~Ei~~~v~~~~~s~~~~Qa~Ngl~vrmAlL~~~lgg~~ 314 (315) T 1pvv_A 236 GQ-EAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHAQKAVLALVMGGIK 314 (315) T ss_dssp ST-TSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHSCC T ss_pred CC-CCCHHHHHHHHHHCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 66-10259999877635633999944899989989999878870088886699776999997019999999999976886 No 10 >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, JCSG, protein structure initiative, PSI; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 Probab=100.00 E-value=0 Score=617.33 Aligned_cols=299 Identities=23% Similarity=0.294 Sum_probs=273.6 Q ss_pred CC-CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 99-77777417822389999999999999999644204877521289769999607873378999979876135211123 Q gi|254780300|r 1 MY-SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ 79 (316) Q Consensus 1 m~-~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~ 79 (316) |. ++.+||||+++||+++|++.||++|.++|..+... ...+.|+||+++++|+|||||||+|||+|+.+|||++++++ T Consensus 13 m~~~l~gk~llsi~dls~~ei~~ll~~A~~lk~~~~~~-~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~ 91 (325) T 1vlv_A 13 MSVNLKGRSLLTLLDFSPEEIRYLLDISKQVKMENRSK-LRTERFKGMTLAMIFEKRSTRTRLAFETAFAEEGGHPIFLS 91 (325) T ss_dssp CCCCCTTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHHT-CCCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEC T ss_pred CCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECC T ss_conf 56778899808511089999999999999997642247-77645799889998568975378999999998398589746 Q ss_pred CCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCC Q ss_conf 33321013334224799987413671465203210055420012342111123456631223322222220122210001 Q gi|254780300|r 80 TKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNL 159 (316) Q Consensus 80 ~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l 159 (316) +.+|+++||||++||++|+++| +|++++|++.++.+..+++++++| |||||++ .+||||+|+|+|||+|.+|.++|+ T Consensus 92 ~~~ss~~kgEsl~Dt~~~ls~y-~D~ivvR~~~~~~~~~~a~~~~vP-VINa~~~-~~HPtQaLlDl~Ti~e~~g~l~gl 168 (325) T 1vlv_A 92 PNDIHLGAKESLEDTARVLGRM-VDAIMFRGYKQETVEKLAEYSGVP-VYNGLTD-EFHPTQALADLMTIEENFGRLKGV 168 (325) T ss_dssp TTTCCTTTSSCHHHHHHHHHTT-CSEEEEESSCHHHHHHHHHHHCSC-EEESCCS-SCCHHHHHHHHHHHHHHHSCSTTC T ss_pred CCCCCCCCCCCHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHCCCC-EECCCCC-CCCHHHHHHHHHHHHHHHCCCCCC T ss_conf 6433567885368999999851-651577404420466666506764-1417888-777899999999999983974567 Q ss_pred CEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECC Q ss_conf 00103554433013344664201342055327753222112-----------1234330058456036862210001133 Q gi|254780300|r 160 HIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQ 228 (316) Q Consensus 160 ~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~ 228 (316) +|+|+||+. +++++|++.+++++|+++++++|+++.|+.. .+..+++++++++|+++|||||+++|+. T Consensus 169 ~i~~vGd~~-~~~~~s~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aDvvyt~~~~~ 247 (325) T 1vlv_A 169 KVVFMGDTR-NNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWAS 247 (325) T ss_dssp EEEEESCTT-SHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC- T ss_pred CCEEECCCC-CCEEEHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEECCHHHHHCCCCEEEEHHHHH T ss_conf 725766875-5375319999997598499973843388889999876554423764201069999970698664016667 Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHH-CCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 123334444555420235758899983-79985995589987687447679769970168687756999999999997 Q gi|254780300|r 229 ERIPRSLIPSIREYKHVYSLDEKKLKY-AKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305 (316) Q Consensus 229 e~~~~~~~~~~~~~~~~~~v~~~~l~~-a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l 305 (316) ++.... .....+++.+||||.++|+. ++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||.++| T Consensus 248 ~~~~~~-~~~~~~~~~~y~v~~~~l~~~ak~~~i~mHplP~~Rg~EI~~~V~d~~~s~i~~Qa~Ngl~vr~AlL~~lL 324 (325) T 1vlv_A 248 MGEEDK-EKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKHTIKAVMIATL 324 (325) T ss_dssp ----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHH-HHHHHHHCCCCEECHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 545466-68998760375056999972189998996998489984828878569987399998725999999999986 No 11 >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A Probab=100.00 E-value=0 Score=613.07 Aligned_cols=302 Identities=22% Similarity=0.236 Sum_probs=276.3 Q ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 97777741782238999999999999999964420487752128976999960787337899997987613521112333 Q gi|254780300|r 2 YSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTK 81 (316) Q Consensus 2 ~~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~ 81 (316) .|+.+||||+++||+++||+.||++|.++|+.+.+... .+.|+||+++++|+|||||||+|||+|+.+|||++++++++ T Consensus 2 ~~m~~k~llsi~dls~~ei~~ll~~A~~lk~~~~~~~~-~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~~~~~ 80 (335) T 1dxh_A 2 FNMHNRNLLSLMHHSTRELRYLLDLSRDLKRAKYTGTE-QQHLKRKNIALIFEKTSTRTRCAFEVAAYDQGANVTYIDPN 80 (335) T ss_dssp CCCTTCCBSSSTTCCHHHHHHHHHHHHHHHHHHHHTCC-CCCCTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECTT T ss_pred CCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCC T ss_conf 99999895770129999999999999999866645887-65579998999956897017999999999859909978853 Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 32101333422479998741367146520321005542001234211112345663122332222222012221000100 Q gi|254780300|r 82 NSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHI 161 (316) Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316) +||++||||++||++|+|+| +|++++|++.++.+..+++++++| ||||+++ ++||||+|+|+|||+|++|.+.+.++ T Consensus 81 ~ss~~kgEsl~Dt~~~ls~y-~D~iviR~~~~~~~~~~a~~~~vP-VIN~~~~-~~HPtQaLlDl~Ti~e~~g~~~~~~~ 157 (335) T 1dxh_A 81 SSQIGHKESMKDTARVLGRM-YDAIEYRGFKQEIVEELAKFAGVP-VFNGLTD-EYHPTQMLADVLTMREHSDKPLHDIS 157 (335) T ss_dssp TCCBTTTBCHHHHHHHHHHH-CSEEEEECSCHHHHHHHHHHSSSC-EEEEECS-SCCHHHHHHHHHHHHHTCSSCGGGCE T ss_pred CCCCCCCCCHHHHHHHHHHC-CCCEEEECHHHHHHHHHHHHCCCC-EEECCCC-CCCHHHHHHHHHHHHHHCCCCCCCCE T ss_conf 34356674588999987622-560355410577799986414786-6626998-75556999999999986174436857 Q ss_pred EECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECCHH Q ss_conf 103554433013344664201342055327753222112-----------123433005845603686221000113312 Q gi|254780300|r 162 AICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQER 230 (316) Q Consensus 162 a~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~ 230 (316) +++||..++||+||++.+++++|+++++++|+++.|.+. .+..+++++|++++++++||||+++|++|+ T Consensus 158 ~~~~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvv~t~~~~~~~ 237 (335) T 1dxh_A 158 YAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMG 237 (335) T ss_dssp EEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSS T ss_pred EEEECCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEEEEECC T ss_conf 99856887651479999999779869996685457878999999999997499899984999983679889877777524 Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHH-HCCCCCEEECCCCCC-------------------CCCCCCHHHHCCCCCHHHHHH Q ss_conf 333444455542023575889998-379985995589987-------------------687447679769970168687 Q gi|254780300|r 231 IPRSLIPSIREYKHVYSLDEKKLK-YAKKDALVMHPGPIN-------------------RNYEISSSVADGSQSIIQYQV 290 (316) Q Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~l~-~a~~~ai~mHcLP~~-------------------Rg~Ev~~~v~d~~~s~v~~Qa 290 (316) +..+......+++.+||||.++|+ .++++++||||||++ ||+||+++|+|+|+|+||+|| T Consensus 238 ~~~~~~~~~~~~~~~~~v~~e~l~~~a~~~~i~mH~lP~~~~~~~~~~~~~~~~~p~~~rg~Ei~~~v~d~p~s~i~~Qa 317 (335) T 1dxh_A 238 EPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNLANGIEVTEDVFESPYNIAFEQA 317 (335) T ss_dssp SCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSCCCCSSSSHHHHHHHHHCGGGGGBSSBBHHHHTSTTBCHHHHH T ss_pred CHHHHHHHHHHHHCCCEECHHHHHHCCCCCEEEECCCCCCCCHHHCCCCHHHHHCCCCCCCCEECHHHHCCCCCHHHHHH T ss_conf 21333467776521223339999851799959968997764112102430133178888771865889579975799999 Q ss_pred HHHHHHHHHHHHHHHCC Q ss_conf 75699999999999778 Q gi|254780300|r 291 EMGVAVRMAIIKELLEN 307 (316) Q Consensus 291 ~Nrl~~~~AlL~~~l~~ 307 (316) +||+|+|||||+++|++ T Consensus 318 ~Ng~~vrmAiL~~llg~ 334 (335) T 1dxh_A 318 ENRMHTIKAILVSTLAD 334 (335) T ss_dssp HHHHHHHHHHHHHHHSC T ss_pred HHHHHHHHHHHHHHHCC T ss_conf 73499999999998615 No 12 >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A Probab=100.00 E-value=0 Score=610.37 Aligned_cols=304 Identities=20% Similarity=0.220 Sum_probs=276.9 Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211123333 Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316) Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316) ++++||||+++||+++|++.||++|.++|....+.+...+.|+||+++++|+|||||||+|||+|+.+|||+++++++.+ T Consensus 3 ~l~~k~lLsi~dls~~ei~~ll~~A~~~k~~~~~~~~~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ 82 (321) T 1oth_A 3 QLKGRDLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETGFALLGGHPCFLTTQD 82 (321) T ss_dssp CCTTCCBSCGGGSCHHHHHHHHHHHHHHHHHHHTTCCCCCTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEETTT T ss_pred CCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCC T ss_conf 89999928700089999999999999999887527876744699889998668975549999999997799779567421 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 21013334224799987413671465203210055420012342111123456631223322222220122210001001 Q gi|254780300|r 83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIA 162 (316) Q Consensus 83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia 162 (316) |+++||||++||++|+++|+ |++++|++.++.+.++++++++| |||| +|.++||||+|+|+|||+|++|.++|++|+ T Consensus 83 ss~~kgEsl~Dt~~~ls~~~-d~ivvR~~~~~~~~~~~~~~~vp-Ving-~~~~~HPtQaL~Dl~Ti~e~~g~l~gl~i~ 159 (321) T 1oth_A 83 IHLGVNESLTDTARVLSSMA-DAVLARVYKQSDLDTLAKEASIP-IING-LSDLYHPIQILADYLTLQEHYSSLKGLTLS 159 (321) T ss_dssp SCBTTTBCHHHHHHHHHHHC-SEEEEECSCHHHHHHHHHHCSSC-EEES-CCSSCCHHHHHHHHHHHHHHHSCCTTCEEE T ss_pred CCCCCCCCHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCC-EECC-CCCCCCHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 34676402899999998616-51588730230088886405787-5647-886546889999999999986887787799 Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC-----------CCCCCCCCCCHHHCCCCCCEEEEEEECCHHH Q ss_conf 03554433013344664201342055327753222112-----------1234330058456036862210001133123 Q gi|254780300|r 163 ICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316) Q Consensus 163 ~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~-----------~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316) |||| ++||+||++.+++++|+++++++|+++.|... .+..+.+++|+.+++.++|+||++.|.+++. T Consensus 160 ~vGD--~~~v~~S~~~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~~d~v~~~~~~~~~~ 237 (321) T 1oth_A 160 WIGD--GNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGR 237 (321) T ss_dssp EESC--SSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTC T ss_pred EECC--CCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEEEEECHH T ss_conf 9768--76635699999875088479984577687589999999999964998999738899850688799986673115 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf 33444455542023575889998379985995589987687447679769970168687756999999999997781422 Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQNKI 311 (316) Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~~~ 311 (316) ..+ .....+++..|+||.++|+.++++++|||||| +||+||+++|+++|+|+||+||+||+|+|||||+++|++.+.- T Consensus 238 ~~~-~~~~~~~~~~y~i~~~~l~~~~~~~i~mHplP-~rg~EI~~~V~~~~~s~i~~Qa~Ngl~vrmAlL~~lL~~~~~~ 315 (321) T 1oth_A 238 EEE-KKKRLQAFQGYQVTMKTAKVAASDWTFLHCLP-RKPEEVDDEVFYSPRSLVFPEAENRKWTIMAVMVSLLTDYSPQ 315 (321) T ss_dssp GGG-HHHHHHHTTTCCBCHHHHHTSCTTCEEEECSC-CCTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_pred HHH-HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC-CCCCCCCHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHCCCCCC T ss_conf 555-78888888888888999955799989979999-9998208888579987799998640999999999986576775 Q ss_pred CC Q ss_conf 20 Q gi|254780300|r 312 TQ 313 (316) Q Consensus 312 ~~ 313 (316) -| T Consensus 316 ~~ 317 (321) T 1oth_A 316 LQ 317 (321) T ss_dssp SC T ss_pred CC T ss_conf 57 No 13 >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421} Probab=100.00 E-value=0 Score=613.33 Aligned_cols=297 Identities=25% Similarity=0.336 Sum_probs=272.8 Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211123333 Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316) Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316) +-.+||||+++||+++||..||++|.++|+.+ ..+.|+||+++++|+|||||||+|||+|+.+|||+++++++++ T Consensus 10 ~~~~k~ll~i~dls~~ei~~ll~~A~~lk~~~-----~~~~L~gK~v~llF~epSTRTR~SFe~A~~~LGg~vi~~~~~~ 84 (323) T 3gd5_A 10 TRFRPDLLSLDDLDEAQLHALLTLAHQLKRGE-----RVANLHGKVLGLVFLKASTRTRVSFTVAMYQLGGQVIDLSPSN 84 (323) T ss_dssp CCCCSCBSSGGGSCHHHHHHHHHHHHHHHHTS-----SCCCCTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEC---- T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCC-----CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEECCCCC T ss_conf 66688874222189999999999999987367-----6777899989999668971169999999998599199635422 Q ss_pred CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEE Q ss_conf 21013334224799987413671465203210055420012342111123456631223322222220122210001001 Q gi|254780300|r 83 SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIA 162 (316) Q Consensus 83 s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia 162 (316) |+++||||++||++++++| .|++++|++.++.+.++++++++| |||||++ .+||||+|+|++||+|.+|.++|++|+ T Consensus 85 ss~~kgEs~~Dt~~~ls~~-~d~iv~R~~~~~~~~~~a~~s~vP-VINag~~-~~HPtQaLlDl~Ti~e~~g~l~gl~i~ 161 (323) T 3gd5_A 85 TQVGRGEPVRDTARVLGRY-VDGLAIRTFAQTELEEYAHYAGIP-VINALTD-HEHPCQVVADLLTIRENFGRLAGLKLA 161 (323) T ss_dssp ------CCHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHHCSC-EEEEECS-SCCHHHHHHHHHHHHHHHSCCTTCEEE T ss_pred CCCCCCCCHHHHHHHHHCC-CHHHHEECCHHHHHHHHHHCCCCC-EEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 4457763037799998522-114321000056799985217977-6858887-416899998899999985874688799 Q ss_pred ECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHH Q ss_conf 0355443301334466420134205532775322211-----------21234330058456036862210001133123 Q gi|254780300|r 163 ICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316) Q Consensus 163 ~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316) |+|| ++||++|++.+++++|+++.+++|+++.+.. ..+..+.+++|++++++++|+||+++|++++. T Consensus 162 ~vGd--~~~v~~S~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~ea~~~aDviyt~~~~~~~~ 239 (323) T 3gd5_A 162 YVGD--GNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQ 239 (323) T ss_dssp EESC--CCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---- T ss_pred EECC--CCCCCCCHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEECCCHHHHHCCCCEEEEEHHHHHCC T ss_conf 9788--65534559999864698089973876688789999999987633881000278999955798766311323101 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 3344445554202357588999837998599558998768744767976997016868775699999999999778142 Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLENQNK 310 (316) Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~~~ 310 (316) .... ....+|+.+||||+++|+.++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||+++||++.- T Consensus 240 ~~~~-~~~~~~~~~y~vt~~~l~~a~~~~i~MHplP~~Rg~EI~~~V~d~~~s~~~~Qa~Ngl~vr~AlL~~llgg~~~ 317 (323) T 3gd5_A 240 EAET-QHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQKAVLAALMGGREG 317 (323) T ss_dssp ------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHC---- T ss_pred CHHH-HHHHHHHCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 0334-56887640002529999537989899898999888534878865998679999971199999999999778967 No 14 >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A Probab=100.00 E-value=0 Score=608.60 Aligned_cols=295 Identities=25% Similarity=0.285 Sum_probs=270.5 Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 77741782238999999999999999964420487752128976999960787337899997987613521112333321 Q gi|254780300|r 5 PLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSA 84 (316) Q Consensus 5 ~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~ 84 (316) -|||||+++||+++||..||++|.++|+.+.+. ...++||+++++|+|||||||+|||+|+.+|||+++++++.+++ T Consensus 1 ~mkh~l~i~dls~~ei~~ll~~A~~lk~~~~~~---~~~l~~k~v~llF~epSTRTR~SFe~A~~~LGg~~i~~~~~~ss 77 (307) T 2i6u_A 1 VIRHFLRDDDLSPAEQAEVLELAAELKKDPVSR---RPLQGPRGVAVIFDKNSTRTRFSFELGIAQLGGHAVVVDSGSTQ 77 (307) T ss_dssp CCCCBSSGGGSCHHHHHHHHHHHHHHHHSTTSC---CTTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEEGGGSG T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCC T ss_conf 973569810099999999999999986274346---74467977999967997543999999999869918517754356 Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 01333422479998741367146520321005542001234211112345663122332222222012221000100103 Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC 164 (316) Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~v 164 (316) ++||||++||+++++.| +|++|+|++.++.+.++++++++| |||||++ .+||||+|+|++||+|.+|.++|++|+|| T Consensus 78 ~~kgEs~~Dt~~~l~~~-~d~iv~R~~~~~~~~~~a~~~~vP-VINag~~-~~HPtQaLlDl~Ti~e~~g~l~gl~i~~v 154 (307) T 2i6u_A 78 LGRDETLQDTAKVLSRY-VDAIVWRTFGQERLDAMASVATVP-VINALSD-EFHPCQVLADLQTIAERKGALRGLRLSYF 154 (307) T ss_dssp GGGTCCHHHHHHHHHHH-EEEEEEECSSHHHHHHHHHHCSSC-EEESCCS-SCCHHHHHHHHHHHHHHHSCCTTCEEEEE T ss_pred CCCCCCHHHHHHHHHCC-CCCEEEECHHHHHHHHHHHHCCCC-EEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 78898599999997442-220134102345699998727876-4647998-87768999999999998589789889997 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-----------CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHH Q ss_conf 55443301334466420134205532775322211-----------2123433005845603686221000113312333 Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPR 233 (316) Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-----------~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~ 233 (316) ||+.| ++++|++.++.++|+++++++|+++.|.. ..+..++++++++++++++||||+++|++++... T Consensus 155 Gd~~~-~~~~s~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvv~~~~~~~~~~~~ 233 (307) T 2i6u_A 155 GDGAN-NMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQEN 233 (307) T ss_dssp SCTTS-HHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTT T ss_pred CCCCC-CHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCEEEEEEEEEECCCC T ss_conf 78887-71507999998669858725872348888999999988886188518964688886489889975215301323 Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 44445554202357588999837998599558998768744767976997016868775699999999999778 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~ 307 (316) ... ...++...||+|.++|+.++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||+++|+. T Consensus 234 ~~~-~~~~~~~~~~l~~~~l~~a~~~~ivmHplP~~R~~Ei~~~v~~~~~s~~~~Qa~ngl~vrmAlL~~ll~~ 306 (307) T 2i6u_A 234 DGL-DRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHAQKALLVWLLER 306 (307) T ss_dssp SCC-CSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHTSTTBCHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCH-HHCCCCCCEEECHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHCHHHHHHHHHHHHHHC T ss_conf 320-1124466256669999517989699898998678766867856996579999876299999999999826 No 15 >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* Probab=100.00 E-value=0 Score=604.09 Aligned_cols=293 Identities=31% Similarity=0.456 Sum_probs=264.7 Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCC-CCCCCC Q ss_conf 7741782238999999999999999964420487752128976999960787337899997987613521112-333321 Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVINI-NTKNSA 84 (316) Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l-~~~~s~ 84 (316) |||||+++||+++|+..||++|.++|+.+.. ..+.|+||+++++|+|||||||+|||+|+++|||+++++ ++++++ T Consensus 1 mkh~l~~~dls~~ei~~ll~~A~~~k~~~~~---~~~~l~gk~v~llF~k~StRTR~SFe~A~~~LGg~~i~~~~~~~~~ 77 (299) T 1pg5_A 1 LKHIISAYNFSRDELEDIFALTDKYSKNLND---TRKILSGKTISIAFFEPSTRTYLSFQKAIINLGGDVIGFSGEESTS 77 (299) T ss_dssp CCCBCSGGGCCHHHHHHHHHHHHHHHSCCTT---CCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEECC---- T ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHCCC---CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 9884860118999999999999999760166---6655799989999627873169999999998099621366631100 Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 01333422479998741367146520321005542001234211112345663122332222222012221000100103 Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC 164 (316) Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~v 164 (316) +++|||++||++|+|+| +|+|++|++.+..+.++++++++| |||||++.++||||+|+|++||+|++|++++++++|+ T Consensus 78 ~~~~Es~~Dt~~vls~~-~d~i~~R~~~~~~~~~~~~~s~vP-vINAg~~~~~HPtQ~LaDl~Ti~e~~g~~~~l~i~~~ 155 (299) T 1pg5_A 78 VAKGENLADTIRMLNNY-SDGIVMRHKYDGASRFASEISDIP-VINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALL 155 (299) T ss_dssp ---CCCHHHHHHHHHHH-CSEEEEEESSBTHHHHHHHHCSSC-EEEEEETTTBCHHHHHHHHHHHHHHHSCSTTCEEEEE T ss_pred CCCCCHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHHCCCC-EECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 57875199999998625-744898842320688877635773-1117776777856899999999998388555637885 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEE-ECCCCCCCCCC----CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHH Q ss_conf 554433013344664201342055-32775322211----2123433005845603686221000113312333444455 Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIR-VIAPITLLPKD----ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSI 239 (316) Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~-~~~P~~~~~~~----~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~ 239 (316) ||..|+||+||++.+++++|+.+. +++|+.+.+.. ..+..+..++++.++++++|+||+++|+.|++.... .. T Consensus 156 gd~~~~~v~~S~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvvy~~~~~~~~~~~~~--~~ 233 (299) T 1pg5_A 156 GDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEM--EY 233 (299) T ss_dssp ECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHH--HH T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCHHH--HH T ss_conf 1776105778899999874886311258301354577765406874335698887078766875032224543078--88 Q ss_pred HHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 54202357588999837998599558998768744767976997016868775699999999999778 Q gi|254780300|r 240 REYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307 (316) Q Consensus 240 ~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~~ 307 (316) ++++..||||.++|+.++++++|||||| ||+||+++|+|+|+|+||+||+||+|+|||||.|+||. T Consensus 234 ~~~~~~~~v~~~~~~~~~~~~ifmHcLP--rg~Ev~~~V~d~~~s~v~~Qa~Nrl~~~~AlL~~llg~ 299 (299) T 1pg5_A 234 EKIKGSYIVSLDLANKMKKDSIILHPLP--RVNEIDRKVDKTTKAKYFEQASYGVPVRMSILTKIYGE 299 (299) T ss_dssp HHHGGGGSBCHHHHHTSCTTCEEECCSC--CSSSBCGGGGGSTTBCHHHHHHHHHHHHHHHHHHHHCC T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCC--CCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 8988887641999972698979979999--98762877746874779999981499999999998088 No 16 >1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET: AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A 1yh1_A* 1zq8_A* 3kzc_A* 3kzk_A* 3kzm_A* 3kzn_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 2g6a_A* 3l05_A* 2g65_A* 3l02_A* 3m4n_A* 2g6c_A* 3l06_A* 2g68_A* ... Probab=100.00 E-value=0 Score=596.59 Aligned_cols=296 Identities=23% Similarity=0.337 Sum_probs=256.5 Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 77777417822389999999999999999644204877521289769999607873378999979876135211123333 Q gi|254780300|r 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316) Q Consensus 3 ~f~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316) ++.|||||+++||+++|++.||++|.++|+.+ ..+.|+||+++++|+|||||||+|||+||.+|||+++++++.. T Consensus 20 ~m~mkhlLsi~dls~~ei~~l~~~A~~~k~~~-----~~~~L~gk~v~~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ 94 (359) T 1zq6_A 20 HMSLKHFLNTQDWSRAELDALLTQAALFKRNK-----LGSELKGKSIALVFFNPSMRTRTSFELGAFQLGGHAVVLQPGK 94 (359) T ss_dssp ---CCCBSCGGGSCHHHHHHHHHHHHHHHHCC-----CCCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEECHHH T ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCC-----CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEECCCC T ss_conf 88666507523399999999999999998367-----8766899989998558971089999999998599589827877 Q ss_pred ------------CCCCCCCCCCCHHHHHHHHCCCCEEEECC----------CCCHHHHHHCCCCCCCCCCCCCCCCCCHH Q ss_conf ------------21013334224799987413671465203----------21005542001234211112345663122 Q gi|254780300|r 83 ------------SAMKKGENIADTIATLNALRPNIIVIRHP----------YSGAVNSLMHKIKGPSIINAGDGTHEHPS 140 (316) Q Consensus 83 ------------s~~~kgEs~~Dta~vls~~~~d~iv~R~~----------~~~~~~~~a~~~s~ppVINag~~~~~HP~ 140 (316) ++.++|||++||++++++| +|+||+|++ .++.+.++++++++| |||+| .++||| T Consensus 95 s~~~~~~~~~s~~~~~~~Es~~Dt~~~ls~y-~D~iviR~~~~~~~~~~~~~~~~~~~~a~~~~vp-vin~g--~~~HPt 170 (359) T 1zq6_A 95 DAWPIEFNLGTVMDGDTEEHIAEVARVLGRY-VDLIGVRAFPKFVDWSKDREDQVLKSFAKYSPVP-VINME--TITHPC 170 (359) T ss_dssp HSCCEECSSSCCCCSSCCEEHHHHHHHHHHH-CSEEEEECCCCSSCHHHHTTCHHHHHHHHHCSSC-EEESS--SSCCHH T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCC-CCCCC--CCCCCH T ss_conf 6442134666320366415799999987524-8789996364322200460168999999767986-21688--877854 Q ss_pred HHHHHHHHHHCCCCC--CCCCC----EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCC-CCCCCC-----------CCC Q ss_conf 332222222012221--00010----010355443301334466420134205532775-322211-----------212 Q gi|254780300|r 141 QALLDAFAIRHFKGK--ISNLH----IAICGDILHSRVARSDIMLLNTMGARIRVIAPI-TLLPKD-----------ISN 202 (316) Q Consensus 141 Q~LaDl~Ti~e~~g~--l~~l~----ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~-~~~~~~-----------~~~ 202 (316) |+|+|+|||+|.||. ++|++ ++|+||+.||||++|++.+++++|+++++++|+ .+.|.. ..+ T Consensus 171 QaLlDl~Ti~e~~g~~~~~g~~~~~~~~~~gd~~~~~v~~S~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~g 250 (359) T 1zq6_A 171 QELAHALALQEHFGTPDLRGKKYVLTWTYHPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESG 250 (359) T ss_dssp HHHHHHHHHHHHHTSSCCTTCEEEEEECCCSSCCCSHHHHHHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHS T ss_pred HHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC T ss_conf 78999999999719832258637898511478554378888888898759879998068435888899999877788708 Q ss_pred CCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHH--HHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHC Q ss_conf 3433005845603686221000113312333444--45554202357588999837998599558998768744767976 Q gi|254780300|r 203 MGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLI--PSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVAD 280 (316) Q Consensus 203 ~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~--~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d 280 (316) ..+++++|+++++++|||||+++||+|++.+... ....++...|++|+++++.+ ++++||||||++||+||+++|+| T Consensus 251 ~~i~~~~d~~ea~~~aDvvyt~~~q~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~i~MHplP~~Rg~EI~~eV~d 329 (359) T 1zq6_A 251 GSLQVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALT-NNGVFSHCLPLRRNVKATDAVMD 329 (359) T ss_dssp CEEEEECCHHHHHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHHTS-SSCEEECCSCCCBTTTBCHHHHT T ss_pred CCEEEECCHHHHHCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHCCCHHHHHHCCC-CCCEEECCCCCCCCCCCCHHHHC T ss_conf 86189558889845966999853773011540356799999876348279996378-99989899999998833876757 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC Q ss_conf 9970168687756999999999997781 Q gi|254780300|r 281 GSQSIIQYQVEMGVAVRMAIIKELLENQ 308 (316) Q Consensus 281 ~~~s~v~~Qa~Nrl~~~~AlL~~~l~~~ 308 (316) +|+|+||+||+||+|+|||||+++||.. T Consensus 330 ~p~s~i~~Qa~Ngl~vrmAlL~~llg~~ 357 (359) T 1zq6_A 330 SPNCIAIDEAENRLHVQKAIMAALVGQS 357 (359) T ss_dssp STTBCHHHHHHHHHHHHHHHHHHHC--- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 9975699998730999999999985788 No 17 >2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus HB8} Probab=100.00 E-value=0 Score=595.63 Aligned_cols=292 Identities=22% Similarity=0.290 Sum_probs=268.4 Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC Q ss_conf 77741782238999999999999999964420487752128976999960787337899997987613521112333321 Q gi|254780300|r 5 PLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSA 84 (316) Q Consensus 5 ~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~ 84 (316) .+||||+++||+++||+.||++|.++|+.+.. .+.|+||+++++|+|||||||+|||.|+.+|||++++++..+|| T Consensus 8 m~k~ll~i~dls~~~i~~ll~~A~~lk~~~~~----~~~L~gk~v~llF~epSTRTR~SFe~A~~~LGg~~i~~~~~~ss 83 (301) T 2ef0_A 8 LPKDLLDFSGYGPKELQALLDLAEQLKRERYR----GEDLKGKVLALLFEKPSLRTRTTLEVAMVHLGGHAVYLDQKQVG 83 (301) T ss_dssp CCSCBSSSTTCCHHHHHHHHHHHHHHHHHTCC----CCTTTTCEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEGGGSC T ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCC----CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCC T ss_conf 77464862229999999999999998746335----77579988999854787306999999999679988975643334 Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEC Q ss_conf 01333422479998741367146520321005542001234211112345663122332222222012221000100103 Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC 164 (316) Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~v 164 (316) ++||||++||++|+++| .|++++|++.++.+.++++++++| |||||++ .+||||+|+|+|||+|.+|.++|++|+|+ T Consensus 84 ~~kgEs~~Dt~~~l~~~-~d~iviR~~~~~~~~~~a~~s~vp-VINa~~~-~~HPtQaLlDl~Ti~e~~g~~~~l~i~~v 160 (301) T 2ef0_A 84 IGEREPVRDVAKNLERF-VEGIAARVFRHETVEALARHAKVP-VVNALSD-RAHPLQALADLLTLKEVFGGLAGLEVAWV 160 (301) T ss_dssp TTTCCCHHHHHHHHTTT-CSEEEEECSSHHHHHHHHHHCSSC-EEEEECS-SCCHHHHHHHHHHHHHHHSCCTTCEEEEE T ss_pred CCCCCCHHHHHHHHHHC-CCCCEEEEECCHHHHHHHHHCCCC-EEECCCC-CCCHHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 45445199999986512-674007983400099999867898-7838887-52598999889999998687568705986 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC--CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 55443301334466420134205532775322211--2123433005845603686221000113312333444455542 Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD--ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREY 242 (316) Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~--~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~ 242 (316) || ++||.+|++.++..+|+++++++|+++.+.. ........++|+++++.++|+||+++|+.++...++....++| T Consensus 161 Gd--~~~v~~s~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~d~~e~~~~ad~v~~d~~~~~~~~~e~~~~~~~~ 238 (301) T 2ef0_A 161 GD--GNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDF 238 (301) T ss_dssp SC--CCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHT T ss_pred CC--CCCCHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHCCCCEECCHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHH T ss_conf 37--6752678999999739955760587677898998642673004688864588778975154432367789999988 Q ss_pred CCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 0235758899983799859955899876874476797699701686877569999999999977 Q gi|254780300|r 243 KHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLE 306 (316) Q Consensus 243 ~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~AlL~~~l~ 306 (316) ..||||.++|+.++++++||||||++||+||+++|+|+|+|+||+||+||+|+|||||+++|+ T Consensus 239 -~~y~l~~~~l~~~~~~~i~mHplP~~rg~Ei~~~v~~~~~s~~~~Qa~Ngl~vrmAlL~~lLk 301 (301) T 2ef0_A 239 -QGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLLTLLK 301 (301) T ss_dssp -TTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHHHHHHHC T ss_pred -HHCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC T ss_conf -756463999960898969979999988976787784698568999998439999999999869 No 18 >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* Probab=100.00 E-value=0 Score=594.08 Aligned_cols=294 Identities=20% Similarity=0.244 Sum_probs=263.0 Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCC- Q ss_conf 7741782238999999999999999964420487752128976999960787337899997987613521112333321- Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSA- 84 (316) Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~- 84 (316) |||||+++||+ ||..||++|.++|+.+.++ .+.|+||+++++|+|||||||+|||+|+.+|||+++++++.+|+ T Consensus 1 Mk~~i~i~Dls--di~~ll~~a~~~k~~~~~~---~~~l~gK~va~lF~epSTRTR~SFe~A~~~LGg~~i~l~~~~ss~ 75 (324) T 1js1_X 1 MKKFTCVQDIG--DLKSALAESFEIKKDRFKY---VELGRNKTLLMIFFNSSLRTRLSTQKAALNLGMNVIVLDINQGAW 75 (324) T ss_dssp CCCBSSGGGGC--CHHHHHHHHHHHHHSTTTT---TTTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEEECCGGGC T ss_pred CCCCCCHHHHH--HHHHHHHHHHHHHHCCCCC---CCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCCC T ss_conf 98747523389--9999999999998374435---655799889999678971269999999998499699737887632 Q ss_pred -----------CCCCCCCCCHHHHHHHHCCCCEEEECCCC----------CHHHHHHCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf -----------01333422479998741367146520321----------005542001234211112345663122332 Q gi|254780300|r 85 -----------MKKGENIADTIATLNALRPNIIVIRHPYS----------GAVNSLMHKIKGPSIINAGDGTHEHPSQAL 143 (316) Q Consensus 85 -----------~~kgEs~~Dta~vls~~~~d~iv~R~~~~----------~~~~~~a~~~s~ppVINag~~~~~HP~Q~L 143 (316) .+||||++||++++|+| +|+|++|++.+ ..+.++++++++| ||| |+|..+||||+| T Consensus 76 ~~~~~~~~~~~~~k~Es~~DT~~vls~~-~D~iv~R~~~~~~~~~~~~~~~~~~~~a~~s~vP-ViN-g~~~~~HPtQaL 152 (324) T 1js1_X 76 KLETERGVIMDGDKPEHLLEAIPVMGCY-CDIIGVRSFARFENREYDYNEVIINQFIQHSGRP-VFS-MEAATRHPLQSF 152 (324) T ss_dssp CEECCSSCCCCSSCCEEHHHHHHHHHHT-CSEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSC-EEE-SSCSSCCHHHHH T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH-CCEEEEEECCHHHHHHHCCHHHHHHHHHHHCCCC-EEC-CCCCCCCHHHHH T ss_conf 1234543000377776499999999861-6425887322134343100057999999852785-347-888766768999 Q ss_pred HHHHHHHCCCCCCCCCCEEECCC---CCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCE Q ss_conf 22222201222100010010355---443301334466420134205532775322211212343300584560368622 Q gi|254780300|r 144 LDAFAIRHFKGKISNLHIAICGD---ILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDV 220 (316) Q Consensus 144 aDl~Ti~e~~g~l~~l~ia~vGD---~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDv 220 (316) +|+|||+|++|.++|++++++|+ .+++||++|++.+++++|+++.+++|+++.+.......+++++|+.+++++||+ T Consensus 153 ~Dl~Ti~e~~g~~~~~~~~~~~~~~~~~~~~v~~S~~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~d~~~a~~~aDv 232 (324) T 1js1_X 153 ADLITIEEYKKTARPKVVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADF 232 (324) T ss_dssp HHHHHHHHHCSSSSCEEEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSE T ss_pred HHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHCCCCEECCCHHHHHCCCCE T ss_conf 99999999637655653899984388540104789999998559764531476446530111351221117766337766 Q ss_pred EEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHH Q ss_conf 10001133123334444555420235758899983799859955899876874476797699701686877569999999 Q gi|254780300|r 221 IMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI 300 (316) Q Consensus 221 v~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~~~s~v~~Qa~Nrl~~~~Al 300 (316) ||+++|+.|+.... ....++...||||+++|+ ++++++||||||++||+||++||+|+|+|+||+||+||+|+|||| T Consensus 233 V~t~~~~~~~~~~~--~~~~~~~~~y~v~~~ll~-~~~dai~MHpLP~~Rg~EIs~eV~d~p~S~if~QaeNgl~~rmAl 309 (324) T 1js1_X 233 IYAKNWAAYTGDNY--GQILSTDRNWTVGDRQMA-VTNNAYFMHCLPVRRNMIVTDDVIESPQSIVIPEAANREISATVV 309 (324) T ss_dssp EEECCCCCCSTTCT--TCCCCCCTTSSBCHHHHT-TSSSCEEECCSCCCBTTTBCHHHHHSTTBCHHHHHHHHHHHHHHH T ss_pred EEEEEEEECCCCHH--HHHHHHHCCCEECHHHHC-CCCCCEEECCCCCCCCCEECHHHHCCCCCHHHHHHHCCHHHHHHH T ss_conf 89988886367307--779987418725499874-799999979999988866377675689872999986209999999 Q ss_pred HHHHHCCCCC Q ss_conf 9999778142 Q gi|254780300|r 301 IKELLENQNK 310 (316) Q Consensus 301 L~~~l~~~~~ 310 (316) |+++|+|-.. T Consensus 310 L~~lL~n~~~ 319 (324) T 1js1_X 310 LKRLLENLPH 319 (324) T ss_dssp HHHHHHTSCS T ss_pred HHHHHHCCCC T ss_conf 9999843986 No 19 >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Probab=97.08 E-value=0.0015 Score=41.72 Aligned_cols=92 Identities=17% Similarity=0.291 Sum_probs=65.2 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+..||+++....|....+......++....++++.++.+|+|... ..-. T Consensus 161 ~L~gk~vgIiG---~G~IG~~va~~l~~fgm~V~~~d~~~~~~~~~~~~~~~~~~~l~ell~~sDvI~l~~Plt~----- 232 (351) T 3jtm_A 161 DLEGKTIGTVG---AGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTE----- 232 (351) T ss_dssp CSTTCEEEEEC---CSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCT----- T ss_pred ECCCCEEEEEC---CCCHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCCCCCCHHHHHHHCCEEEEECCCCC----- T ss_conf 11587666777---4652999999998638867844587776666775196004789999854999999367874----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEE Q ss_conf 444455542023575889998379985995 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316) +. ..-++.+.++.+|++++|- T Consensus 233 -------~T--~~li~~~~~~~mk~~a~lI 253 (351) T 3jtm_A 233 -------KT--RGMFNKELIGKLKKGVLIV 253 (351) T ss_dssp -------TT--TTCBSHHHHHHSCTTEEEE T ss_pred -------CC--CCCCCHHHHHHCCCCCEEE T ss_conf -------33--2563999997379997899 No 20 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Probab=96.43 E-value=0.005 Score=38.36 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=64.3 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+..||+++....|...-.............++++.+..+|+|+.. ..-. T Consensus 143 ~l~gk~vgIiG---~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~D~v~~~~plt~----- 214 (320) T 1gdh_A 143 KLDNKTLGIYG---FGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTP----- 214 (320) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCT----- T ss_pred EECCCEEEEEE---ECHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHCCCEECCCHHHHHHCCCEEEECCCCCH----- T ss_conf 62598899981---6669999999987428768886687775455531263323779999623998998689982----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 44445554202357588999837998599558 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) +. ..-++.+.++.+|++++|.-. T Consensus 215 -------~T--~~li~~~~l~~mk~~a~liN~ 237 (320) T 1gdh_A 215 -------ET--RYFFNKATIKSLPQGAIVVNT 237 (320) T ss_dssp -------TT--TTCBSHHHHTTSCTTEEEEEC T ss_pred -------HH--HHEECHHHHHHCCCCEEEEEC T ss_conf -------66--421189999437753799975 No 21 >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Probab=96.38 E-value=0.0066 Score=37.54 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=64.2 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.|.++.++| .+++.......+..||+++....|..-. ......++....++++.++.+|+|...-=.. T Consensus 165 ~L~gktvGIiG---~G~IG~~va~~l~~fG~~V~~~d~~~~~-~~~~~~~~~~~~~l~ell~~sDivslh~Plt------ 234 (347) T 1mx3_A 165 RIRGETLGIIG---LGRVGQAVALRAKAFGFNVLFYDPYLSD-GVERALGLQRVSTLQDLLFHSDCVTLHCGLN------ 234 (347) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHTTTCEEEEECTTSCT-THHHHHTCEECSSHHHHHHHCSEEEECCCCC------ T ss_pred EEECCCCCEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCC-HHHHHCCCCCCCCHHHHHHHCCEEEEECCCC------ T ss_conf 23276602104---5816999999998769989985566550-2344307633576878675488899705542------ Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEEC Q ss_conf 444555420235758899983799859955 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316) .+. ..-++.+.++.+|++++|-. T Consensus 235 -----~~T--~~li~~~~l~~mk~gailIN 257 (347) T 1mx3_A 235 -----EHN--HHLINDFTVKQMRQGAFLVN 257 (347) T ss_dssp -----TTC--TTSBSHHHHTTSCTTEEEEE T ss_pred -----CCC--CCCCCHHHHHHCCCCCEEEE T ss_conf -----122--46457999973789978998 No 22 >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} Probab=96.29 E-value=0.014 Score=35.35 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=69.8 Q ss_pred HCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCCCCCCHHHCCCCCCEEEEEEEC Q ss_conf 012221000100103554433013344664201342055327753222112--123433005845603686221000113 Q gi|254780300|r 150 RHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI--SNMGVEVFHDMQKGLKNVDVIMILRMQ 227 (316) Q Consensus 150 ~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~--~~~~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316) +...+.+.|.+++++| .+++.......+..+|++++++....-..+.. .+.....+.++.+.+.++|+|+... . T Consensus 149 ~~~~~~l~~~~v~viG---~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~divi~~~-p 224 (300) T 2rir_A 149 QHTDYTIHGSQVAVLG---LGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTI-P 224 (300) T ss_dssp HTCSSCSTTSEEEEEC---CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECC-S T ss_pred HHCCCCCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCHHHHHCCCCEEEEEC-C T ss_conf 7279665788899988---87889999999998799899996988879999973993797233676632688899607-8 Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC Q ss_conf 312333444455542023575889998379985995589 Q gi|254780300|r 228 QERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316) Q Consensus 228 ~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316) .-.++++.++..++++++.-+- T Consensus 225 -----------------~~~i~~~~l~~m~~g~viiD~a 246 (300) T 2rir_A 225 -----------------SMILNQTVLSSMTPKTLILDLA 246 (300) T ss_dssp -----------------SCCBCHHHHTTSCTTCEEEECS T ss_pred -----------------CCEECHHHHHHCCCCCEEEEEC T ss_conf -----------------5101298996179996899957 No 23 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Probab=96.14 E-value=0.014 Score=35.41 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=62.2 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+..||+++....|.................++++.+..+|+|... ....+ T Consensus 188 ~l~gk~vGIiG---~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~~~~~~~~~sl~ell~~sDvV~lh~PLt~~---- 260 (393) T 2nac_A 188 DLEAMHVGTVA---AGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE---- 260 (393) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT---- T ss_pred CCCCCEEEEEC---CCCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCEEECCHHHHHHHCCEEEEECCCCCC---- T ss_conf 11153799876---72015689998521585699971446735532102302314688876415635550578710---- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC Q ss_conf 4444555420235758899983799859955 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316) . ..-++.+.++.+|++++|-. T Consensus 261 --------T--~~lin~~~l~~MK~ga~LIN 281 (393) T 2nac_A 261 --------T--EHMINDETLKLFKRGAYIVN 281 (393) T ss_dssp --------T--TTCBSHHHHTTSCTTEEEEE T ss_pred --------C--CCEECHHHHHHCCCCCEEEE T ss_conf --------1--57077899974599978997 No 24 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Probab=96.13 E-value=0.011 Score=36.14 Aligned_cols=92 Identities=23% Similarity=0.357 Sum_probs=66.2 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+..||++|..+.|... +......++ ...++++.++.+|+|... ..-. T Consensus 139 ~l~~~~vgIiG---~G~IG~~va~~l~~fg~~v~~~~~~~~-~~~~~~~~~-~~~~l~~ll~~sDiv~l~lplt~----- 208 (307) T 1wwk_A 139 ELEGKTIGIIG---FGRIGYQVAKIANALGMNILLYDPYPN-EERAKEVNG-KFVDLETLLKESDVVTIHVPLVE----- 208 (307) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHTTC-EECCHHHHHHHCSEEEECCCCST----- T ss_pred ECCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCC-HHHHHHCCC-EECCHHHHHHHCCEEEECCCCCC----- T ss_conf 04698999979---288899999999877998999879997-666764294-46789999975999999789983----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 44445554202357588999837998599558 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) +. ..-++.+.++..+++++|-.. T Consensus 209 -------~T--~~li~~~~l~~mk~~~~liN~ 231 (307) T 1wwk_A 209 -------ST--YHLINEERLKLMKKTAILINT 231 (307) T ss_dssp -------TT--TTCBCHHHHHHSCTTCEEEEC T ss_pred -------CC--CCCCCHHHHHHCCCCEEEEEC T ss_conf -------11--265699999737998099977 No 25 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} Probab=95.98 E-value=0.021 Score=34.32 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=67.1 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.+.....+..||+++....|..- +......++ ...++++.++.+|+|..- ..-. T Consensus 162 eL~gktvgIiG---~G~IG~~va~~l~~fg~~v~~yd~~~~-~~~~~~~~~-~~~~l~~ll~~sDivslh~plt~----- 231 (335) T 2g76_A 162 ELNGKTLGILG---LGRIGREVATRMQSFGMKTIGYDPIIS-PEVSASFGV-QQLPLEEIWPLCDFITVHTPLLP----- 231 (335) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHTTTCEEEEECSSSC-HHHHHHTTC-EECCHHHHGGGCSEEEECCCCCT----- T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHCCCCCEEECCCCCCC-HHHHHHHCC-CHHHHHHHHHHCCEEEECCCCCC----- T ss_conf 35688899989---878999999985668987866788755-034555332-04348776531899997068853----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCH Q ss_conf 4444555420235758899983799859955899876874476 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISS 276 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~ 276 (316) +. ..-++.+.++.+|++++|--+- ||.=|++ T Consensus 232 -------~T--~~li~~~~l~~mk~ga~lIN~a---RG~iVde 262 (335) T 2g76_A 232 -------ST--TGLLNDNTFAQCKKGVRVVNCA---RGGIVDE 262 (335) T ss_dssp -------TT--TTSBCHHHHTTSCTTEEEEECS---CTTSBCH T ss_pred -------CC--CCHHHHHHHHHCCCCCEEEECC---CCCCCCH T ss_conf -------22--1032299998579998899716---8733467 No 26 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Probab=95.95 E-value=0.012 Score=35.95 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=62.9 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.|.++.++| .+++.+.....+..||+++..+.|..-.+. .........++++.++.+|+|...-=-. T Consensus 139 ~L~gktvgIiG---~G~IG~~va~~l~~fg~~v~~~~~~~~~~~--~~~~~~~~~~l~ell~~sDiv~~~~plt------ 207 (313) T 2ekl_A 139 ELAGKTIGIVG---FGRIGTKVGIIANAMGMKVLAYDILDIREK--AEKINAKAVSLEELLKNSDVISLHVTVS------ 207 (313) T ss_dssp CCTTCEEEEES---CSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HHHTTCEECCHHHHHHHCSEEEECCCCC------ T ss_pred CCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCHHH--HCCCCCCCCCHHHHHHHCCEEEECCCCC------ T ss_conf 67999999989---798999999999866986897268775666--3025655588999986499998526333------ Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 4445554202357588999837998599558 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) .+. ..-++.+.++.++++++|--+ T Consensus 208 -----~~T--~~li~~~~l~~mk~~a~lIN~ 231 (313) T 2ekl_A 208 -----KDA--KPIIDYPQFELMKDNVIIVNT 231 (313) T ss_dssp -----TTS--CCSBCHHHHHHSCTTEEEEES T ss_pred -----CCC--CCCCCHHHHHCCCCCCCEEEC T ss_conf -----223--465375786321578714406 No 27 >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} Probab=95.89 E-value=0.012 Score=35.92 Aligned_cols=95 Identities=22% Similarity=0.237 Sum_probs=68.7 Q ss_pred HCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CCCCCCCCCCHHHCCCCCCEEEEEEEC Q ss_conf 012221000100103554433013344664201342055327753222112--123433005845603686221000113 Q gi|254780300|r 150 RHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI--SNMGVEVFHDMQKGLKNVDVIMILRMQ 227 (316) Q Consensus 150 ~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~--~~~~~~~~~d~~ea~~~aDvv~~~~~~ 227 (316) ......+.|.+++.+| .+++.......+..+|++++++.-..-..... .+..+..+.++.+.+.++|+|+... T Consensus 147 ~~~~~~l~g~~v~i~G---~G~~g~~~~~~~~~~g~~v~v~~r~~~~~~~~~~~g~~~~~~~~l~~~~~~aDvvi~~~-- 221 (293) T 3d4o_A 147 QHTDFTIHGANVAVLG---LGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTI-- 221 (293) T ss_dssp HHCSSCSTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECC-- T ss_pred HHCCCCCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCCCEEEECCHHHHHHCCCCEEEECC-- T ss_conf 7378354787899988---88899999999997699799995773008999851883485330677757699999899-- Q ss_pred CHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 31233344445554202357588999837998599558 Q gi|254780300|r 228 QERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 228 ~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) + ..-|+++.++..++++++... T Consensus 222 ----p------------~~~i~~~~l~~~~~gaviiDv 243 (293) T 3d4o_A 222 ----P------------ALVVTANVLAEMPSHTFVIDL 243 (293) T ss_dssp ----S------------SCCBCHHHHHHSCTTCEEEEC T ss_pred ----C------------CCCCCHHHHHHCCCCCEEEEE T ss_conf ----9------------875889999728999799994 No 28 >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Probab=95.88 E-value=0.016 Score=35.01 Aligned_cols=96 Identities=18% Similarity=0.222 Sum_probs=65.0 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-CCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHH Q ss_conf 100010010355443301334466420134205532775322211-2123433005845603686221000113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~ 233 (316) .+.|.++..+| .+++....+..+..||+++....|....+.. ....++....++++.++.+|+|....=.. T Consensus 161 ~l~gk~~giiG---~G~IG~~va~~l~~fg~~v~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~sDiV~l~~Plt----- 232 (364) T 2j6i_A 161 DIEGKTIATIG---AGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLH----- 232 (364) T ss_dssp CSTTCEEEEEC---CSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCS----- T ss_pred CCCCCEEEEEE---EEHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHCCCCCCCCHHHHHHHCCEEEECCCCC----- T ss_conf 45498899995---3389999999975303634763145555400465328512568999985398988636774----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC Q ss_conf 444455542023575889998379985995589 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316) .+.. .-++.+.++.+|++++|-.+- T Consensus 233 ------~~T~--~li~~~~f~~mK~ga~lIN~a 257 (364) T 2j6i_A 233 ------AGTK--GLINKELLSKFKKGAWLVNTA 257 (364) T ss_dssp ------TTTT--TCBCHHHHTTSCTTEEEEECS T ss_pred ------CCCC--CCCCHHHHHHCCCCCEEEEEC T ss_conf ------3440--300099997279998799606 No 29 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Probab=95.82 E-value=0.016 Score=35.08 Aligned_cols=91 Identities=18% Similarity=0.276 Sum_probs=64.5 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.+.....+..||++|....|..- +......++ ...++++.++.+|+|... ..-. T Consensus 147 ~L~g~~vgiiG---~G~IG~~va~~l~~fg~~v~~~~~~~~-~~~~~~~~~-~~~~l~ell~~sDii~~~~plt~----- 216 (334) T 2dbq_A 147 DVYGKTIGIIG---LGRIGQAIAKRAKGFNMRILYYSRTRK-EEVERELNA-EFKPLEDLLRESDFVVLAVPLTR----- 216 (334) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCC-HHHHHHHCC-EECCHHHHHHHCSEEEECCCCCT----- T ss_pred CCCCCEEEEEE---ECHHHHHHHHHHHCCCCEEEEECCCCC-HHHHHHCCC-EECCHHHHHHHCCEEEECCCCCC----- T ss_conf 05799899981---788999999997607878997368873-334765294-45789999866999999289973----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC Q ss_conf 4444555420235758899983799859955 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316) +. ..-++.+.++.+|++++|-- T Consensus 217 -------~T--~~li~~~~~~~mk~ga~lIN 238 (334) T 2dbq_A 217 -------ET--YHLINEERLKLMKKTAILIN 238 (334) T ss_dssp -------TT--TTCBCHHHHHHSCTTCEEEE T ss_pred -------CC--CCCCCHHHHHHCCCCEEEEE T ss_conf -------01--25659999972189819999 No 30 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Probab=95.66 E-value=0.016 Score=35.01 Aligned_cols=129 Identities=17% Similarity=0.239 Sum_probs=79.3 Q ss_pred CCCCCCCCCCCCHH--HHHHHHHHHHCCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC Q ss_conf 11112345663122--33222222201222-1000100103554433013344664201342055327753222112123 Q gi|254780300|r 127 SIINAGDGTHEHPS--QALLDAFAIRHFKG-KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNM 203 (316) Q Consensus 127 pVINag~~~~~HP~--Q~LaDl~Ti~e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~ 203 (316) +|.|+- |.+..+. .+++=++.+.+..| .+.|.++.++| .+++..-....+..+|+++..+.|...... T Consensus 83 ~v~n~p-g~na~aVAE~vl~~~l~~~r~~~~~l~~~tvGIvG---~G~IG~~va~~l~~~g~~v~~~d~~~~~~~----- 153 (380) T 2o4c_A 83 AWSSAP-GCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVG---AGQVGGRLVEVLRGLGWKVLVCDPPRQARE----- 153 (380) T ss_dssp EEECCT-TTTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECHHHHHHS----- T ss_pred EEEECC-CCCCHHHHHHHHHHHHHHHHHHCHHHCCCEEEEEC---CCCCHHHHHHHHHHCCCCCCCCCCCCCCCC----- T ss_conf 799579-86808999999983335666523053077883879---881399999999864962102477422234----- Q ss_pred CCCCCCCHHHCCCCCCEEEE-EEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHH Q ss_conf 43300584560368622100-011331233344445554202357588999837998599558998768744767 Q gi|254780300|r 204 GVEVFHDMQKGLKNVDVIMI-LRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSS 277 (316) Q Consensus 204 ~~~~~~d~~ea~~~aDvv~~-~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~ 277 (316) ......++++.+..+|+|.. ...-... .+....-++.+.++.++++++|..+. ||.-|+++ T Consensus 154 ~~~~~~~l~e~l~~~Divslh~plt~~~----------~~~T~~lin~~~l~~mk~ga~lIN~s---RG~vVde~ 215 (380) T 2o4c_A 154 PDGEFVSLERLLAEADVISLHTPLNRDG----------EHPTRHLLDEPRLAALRPGTWLVNAS---RGAVVDNQ 215 (380) T ss_dssp TTSCCCCHHHHHHHCSEEEECCCCCSSS----------SSCCTTSBCHHHHHTSCTTEEEEECS---CGGGBCHH T ss_pred CCCCCCCHHHHHHCCCEEEEECCCCCCC----------CHHHHHHHHHHHHHHCCCCCEEEEEC---CCCCCCHH T ss_conf 4232256888640078899956688765----------40157675099997379996899805---77666999 No 31 >3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} Probab=95.60 E-value=0.036 Score=32.77 Aligned_cols=92 Identities=12% Similarity=0.072 Sum_probs=61.1 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHH Q ss_conf 21000100103554433013344664201342055327753222112123433005845603686221000-11331233 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIP 232 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~ 232 (316) ..+.|.++.++| .+++.+.....+..||+++..+.|......... ......++++.+..+|+|... ..-. T Consensus 135 ~~l~g~tvgIvG---~G~IG~~va~~l~~fG~~v~~~~~~~~~~~~~~--~~~~~~~l~~ll~~sD~v~~~~Plt~---- 205 (315) T 3kbo_A 135 YTREEFSVGIMG---AGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE--SYVGREELRAFLNQTRVLINLLPNTA---- 205 (315) T ss_dssp CCGGGCCEEEES---CSHHHHHHHHHHHTTTCCEEEEESSCCCCTTEE--EEESGGGHHHHHHTCSEEEECCCCCT---- T ss_pred CCCCCCEEEEEC---CCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC--CEEEECCCEEECCCCCEEECCCCCCC---- T ss_conf 354675789976---183899999999874992552023443232312--12331010000320337840478853---- Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC Q ss_conf 34444555420235758899983799859955 Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316) Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316) +.. --++.+.++.++++++|-- T Consensus 206 --------~T~--~li~~~~l~~mk~~a~lIN 227 (315) T 3kbo_A 206 --------QTV--GIINSELLDQLPDGAYVLN 227 (315) T ss_dssp --------TTT--TCBSHHHHTTSCTTEEEEE T ss_pred --------CCC--CHHHHHHHHHHCCCCEEEE T ss_conf --------333--6232999986145425885 No 32 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Probab=95.58 E-value=0.054 Score=31.65 Aligned_cols=87 Identities=13% Similarity=0.171 Sum_probs=59.2 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++..+| .+++.......+..||+++..+.|.... .......++++.++++|+|... ..-. T Consensus 121 ~l~gk~vgIiG---~G~IG~~va~~l~~fg~~V~~~d~~~~~------~~~~~~~~l~~ll~~sDvv~~~~Plt~----- 186 (303) T 1qp8_A 121 LIQGEKVAVLG---LGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNK----- 186 (303) T ss_dssp CCTTCEEEEES---CSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCST----- T ss_pred CCCCCEEEEEE---ECHHHHHHHHHHHHCCCEEEEECCCCCC------CCCCCCCCHHHHHHCCCEEEECCCCCH----- T ss_conf 35899999990---3899999999887359779974488422------333233879999725799986167970----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC Q ss_conf 4444555420235758899983799859955 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316) +. ..-++.+.++.+|++++|-- T Consensus 187 -------~T--~~li~~~~l~~mk~ga~lIN 208 (303) T 1qp8_A 187 -------HT--RGLVKYQHLALMAEDAVFVN 208 (303) T ss_dssp -------TT--TTCBCHHHHTTSCTTCEEEE T ss_pred -------HC--CCCCCHHHHHHHCCCEEEEE T ss_conf -------00--57458889751015507999 No 33 >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Probab=95.46 E-value=0.02 Score=34.39 Aligned_cols=128 Identities=18% Similarity=0.272 Sum_probs=79.3 Q ss_pred CCCCCCCCCCCCCCHHHHHHH-----HHHHHCCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 421111234566312233222-----222201222-10001001035544330133446642013420553277532221 Q gi|254780300|r 125 GPSIINAGDGTHEHPSQALLD-----AFAIRHFKG-KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPK 198 (316) Q Consensus 125 ~ppVINag~~~~~HP~Q~LaD-----l~Ti~e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~ 198 (316) .++|.|+- |.+ .++.|+ ++......| .+.|.++.++| .+++.......+..||+++..+.|..-.. T Consensus 84 gI~v~n~~-g~~---a~aVAe~~l~~~l~~~~~~~~~~~~ktvGIiG---~G~IG~~va~~l~~~g~~V~~~d~~~~~~- 155 (381) T 3oet_A 84 GIGFSAAP-GCN---AIAVVEYVFSALLMLAERDGFSLRDRTIGIVG---VGNVGSRLQTRLEALGIRTLLCDPPRAAR- 155 (381) T ss_dssp TCEEECCT-TTT---HHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECHHHHHT- T ss_pred EEEEEECC-CCC---HHHHHHHHHHHHHHHHHHCCHHHHCCEEEECC---CCCHHHHHHHHHHCCCCEEEEECCCCCCC- T ss_conf 43899567-646---89999999998789987413554186884437---67578999998754785799986632334- Q ss_pred CCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHH Q ss_conf 12123433005845603686221000-11331233344445554202357588999837998599558998768744767 Q gi|254780300|r 199 DISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSS 277 (316) Q Consensus 199 ~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~ 277 (316) .......++++.++.+|+|..- ..-.+. ++....-++.+.++.+|+++++..+. ||.-|+++ T Consensus 156 ----~~~~~~~~l~~ll~~sDiislh~plt~~~----------~~~T~~li~~~~l~~mk~~a~lIN~s---RG~vVde~ 218 (381) T 3oet_A 156 ----GDEGDFRTLDELVQEADVLTFHTPLYKDG----------PYKTLHLADETLIRRLKPGAILINAC---RGPVVDNA 218 (381) T ss_dssp ----TCCSCBCCHHHHHHHCSEEEECCCCCCSS----------TTCCTTSBCHHHHHHSCTTEEEEECS---CGGGBCHH T ss_pred ----CCCCCCCCHHHHHHHCCCEEEECCCCCCC----------CCCCCCHHHHHHHHHCCCCCEEEEEC---CCCCCCHH T ss_conf ----43344577999997478314532677655----------44341347788886308995799806---73410899 No 34 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Probab=95.36 E-value=0.04 Score=32.49 Aligned_cols=93 Identities=10% Similarity=0.175 Sum_probs=62.7 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.|.++.++| .+++.+.....+..||++|..+.|......... ..+ ...++++.++.+|+|+.. .... T Consensus 134 ~l~gktvgIiG---~G~IG~~va~~l~~fg~~V~~~~~~~~~~~~~~-~~~-~~~~l~e~l~~sDiv~~~-lPlt----- 202 (324) T 3evt_A 134 TLTGQQLLIYG---TGQIGQSLAAKASALGMHVIGVNTTGHPADHFH-ETV-AFTATADALATANFIVNA-LPLT----- 202 (324) T ss_dssp CSTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCS-EEE-EGGGCHHHHHHCSEEEEC-CCCC----- T ss_pred CEECCEEEEEE---ECHHHHHHHHHHHCCCCEEECCCCCCCCCCCHH-HCE-EEEEHHHHCCCCEEEEEC-CCCC----- T ss_conf 30078899990---552569998876227855642588632110022-031-243113321431025632-5797----- Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 4445554202357588999837998599558 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) .+.. .-++.+.++.++++++|.-. T Consensus 203 -----~~T~--~li~~~~~~~mk~~a~lIN~ 226 (324) T 3evt_A 203 -----PTTH--HLFSTELFQQTKQQPMLINI 226 (324) T ss_dssp -----GGGT--TCBSHHHHHTCCSCCEEEEC T ss_pred -----CCCC--CCCHHHHHHHHCCCCCEEEE T ss_conf -----0035--86379997532135414541 No 35 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Probab=95.34 E-value=0.04 Score=32.45 Aligned_cols=92 Identities=12% Similarity=0.248 Sum_probs=64.4 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+..||+++....|... +.. ...++ ...++++.++.+|+|... ..- T Consensus 143 ~l~gk~vgIiG---~G~IG~~va~~l~~fg~~V~~~d~~~~-~~~-~~~~~-~~~~l~~ll~~aDiv~~~lPlt------ 210 (333) T 1j4a_A 143 EVRDQVVGVVG---TGHIGQVFMQIMEGFGAKVITYDIFRN-PEL-EKKGY-YVDSLDDLYKQADVISLHVPDV------ 210 (333) T ss_dssp CGGGSEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCC-HHH-HHTTC-BCSCHHHHHHHCSEEEECSCCC------ T ss_pred EECCCEEEEEE---CCCCCHHHHHHHCCCCCCEEEECCCCC-CCH-HCCCC-CCCCHHHHHHHCCEEEEECCCC------ T ss_conf 40288899992---465147488763366770110078777-102-10560-0387999986499899916898------ Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC Q ss_conf 444455542023575889998379985995589 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316) .+.. .-++.+.++.+|++++|--.- T Consensus 211 ------~~T~--~li~~~~~~~mk~~a~lIN~a 235 (333) T 1j4a_A 211 ------PANV--HMINDESIAKMKQDVVIVNVS 235 (333) T ss_dssp ------GGGT--TCBSHHHHHHSCTTEEEEECS T ss_pred ------CCHH--CEECHHHHHHCCCCCEEEECC T ss_conf ------5112--010599995258998899854 No 36 >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Probab=95.19 E-value=0.042 Score=32.34 Aligned_cols=95 Identities=8% Similarity=0.059 Sum_probs=62.7 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHH Q ss_conf 1000100103554433013344664201-342055327753222112123433005845603686221000113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNT-MGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~-~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+.. +|+++....+....+......+.....++++.++.+|+|...-=.. T Consensus 160 ~l~g~tvGIiG---~G~IG~~~a~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~sDiv~l~~plt----- 231 (348) T 2w2k_A 160 NPRGHVLGAVG---LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYM----- 231 (348) T ss_dssp CSTTCEEEEEC---CSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCS----- T ss_pred CCCCCEEEEEC---CCCCCHHHHHHHHHCCCEEEEEECCCCCCCHHHHCCCCEEECCHHHHHHHCCEEEEECCCC----- T ss_conf 45466899978---6663167677677426607999647410001243037455267999963177555506785----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 44445554202357588999837998599558 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) .+. ..-|+.+.++.++++++|--+ T Consensus 232 ------~~T--~~li~~~~l~~mk~ga~lIN~ 255 (348) T 2w2k_A 232 ------KLT--HHLIDEAFFAAMKPGSRIVNT 255 (348) T ss_dssp ------GGG--TTCBCHHHHHHSCTTEEEEEC T ss_pred ------CCH--HHHHHHHHHHHHCCCCEEEEE T ss_conf ------220--557777686540368568971 No 37 >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* Probab=95.06 E-value=0.067 Score=31.02 Aligned_cols=100 Identities=18% Similarity=0.245 Sum_probs=73.7 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH Q ss_conf 10001001035544330133446642013420553277532--2211212343300584560368622100011331233 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316) -+.|.+++.+| ++.+-+.....+..+|+.|+++.-+.. +..... |+++ ..+++++..+|++++..-.. T Consensus 274 ~laGK~vvV~G---YG~~GrGvA~~~rg~Ga~V~V~EiDPi~ALeA~md--Gf~V-~~~~eaa~~aDi~VTaTG~~---- 343 (494) T 3d64_A 274 MIAGKIAVVAG---YGDVGKGCAQSLRGLGATVWVTEIDPICALQAAME--GYRV-VTMEYAADKADIFVTATGNY---- 343 (494) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTT--TCEE-CCHHHHTTTCSEEEECSSSS---- T ss_pred EECCCEEEEEC---CCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHC--CCEE-EHHHHHHCCCCEEEECCCCC---- T ss_conf 11685799952---54111768998863698699996790678998865--9874-22654221088999906986---- Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHH Q ss_conf 34444555420235758899983799859955899876874476797 Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVA 279 (316) Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~ 279 (316) --|+.+.|+.+|++||+.-..- ...||+-+.. T Consensus 344 -------------~vi~~eh~~~MKdGaIlaN~GH--fd~EId~~~l 375 (494) T 3d64_A 344 -------------HVINHDHMKAMRHNAIVCNIGH--FDSEIDVAST 375 (494) T ss_dssp -------------CSBCHHHHHHCCTTEEEEECSS--SSCSBCCGGG T ss_pred -------------CCCCHHHHHHHCCCCEEECCCC--CHHHEEHHHH T ss_conf -------------6355999998538979966667--4153015555 No 38 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} Probab=95.03 E-value=0.073 Score=30.78 Aligned_cols=86 Identities=20% Similarity=0.300 Sum_probs=58.4 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE-EEECCHHHHH Q ss_conf 100010010355443301334466420134205532775322211212343300584560368622100-0113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI-LRMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~-~~~~~e~~~~ 233 (316) .+.|.++.++| .+++.+.....+..||+++....|..- +. . ....++++.+.++|+|.. ...-.+ T Consensus 141 ~l~gk~vgIiG---~G~IG~~~a~~l~~fg~~v~~~~~~~~-~~-----~-~~~~~l~ell~~sDiv~~~~plt~~---- 206 (311) T 2cuk_A 141 DLQGLTLGLVG---MGRIGQAVAKRALAFGMRVVYHARTPK-PL-----P-YPFLSLEELLKEADVVSLHTPLTPE---- 206 (311) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCC-SS-----S-SCBCCHHHHHHHCSEEEECCCCCTT---- T ss_pred CCCCCEEEEEE---ECHHHHHHHHHHHHCCCEEEEECCCCC-CC-----C-CCCCCHHHHHHHCCEEEECCCCCHH---- T ss_conf 24699899980---788999999999858998999889844-46-----8-7667999999769999993889847---- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEEC Q ss_conf 4444555420235758899983799859955 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316) . ..-++.+.++.+|++++|.- T Consensus 207 --------t--~~li~~~~l~~mk~~a~liN 227 (311) T 2cuk_A 207 --------T--HRLLNRERLFAMKRGAILLN 227 (311) T ss_dssp --------T--TTCBCHHHHTTSCTTCEEEE T ss_pred --------H--CCCCCHHHHHHCCCCEEEEE T ss_conf --------6--27748999974199849997 No 39 >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} Probab=94.94 E-value=0.2 Score=27.93 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=104.3 Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCCC--CCCCC Q ss_conf 777417822389999999999999999644204877521289769999607873378999-979876135211--12333 Q gi|254780300|r 5 PLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSF-EVAGKLLGVHVI--NINTK 81 (316) Q Consensus 5 ~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SF-e~A~~~LGg~~i--~l~~~ 81 (316) .|+ +|+-+.+..+=.+.|-+.-..+++ + +.. ++-.+.++=..|+.++.+.. ..++.++|..+. .|+.+ T Consensus 3 ~M~-iLdGk~iA~~i~~~lk~~v~~l~~---~-g~~----P~LaiIlvgdd~aS~~Yv~~k~k~a~~~Gi~~~~~~l~~~ 73 (285) T 3p2o_A 3 AMT-LLDGKALSAKIKEELKEKNQFLKS---K-GIE----SCLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNEN 73 (285) T ss_dssp CCE-ECCHHHHHHHHHHHHHHHHHHHHT---T-TCC----CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT T ss_pred CCE-EEECHHHHHHHHHHHHHHHHHHHH---C-CCC----CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 889-810499999999999999999984---7-999----8379999699877899999999998436743899841566 Q ss_pred CCCCCCCCCCCCHHHHHHHHC-CCCEEEECCCCCHHH--HHHCCC---CC---CCCCCC-----CCCCCCCHHHHHHHHH Q ss_conf 321013334224799987413-671465203210055--420012---34---211112-----3456631223322222 Q gi|254780300|r 82 NSAMKKGENIADTIATLNALR-PNIIVIRHPYSGAVN--SLMHKI---KG---PSIINA-----GDGTHEHPSQALLDAF 147 (316) Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~-~d~iv~R~~~~~~~~--~~a~~~---s~---ppVINa-----g~~~~~HP~Q~LaDl~ 147 (316) .++ |.+.+.+..++.-- ++.|++-.|..+.+. ...... .. ..-.|. +....-.||-++|=+- T Consensus 74 ~t~----~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~PcTp~av~~ 149 (285) T 3p2o_A 74 ITQ----NELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMK 149 (285) T ss_dssp CCH----HHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGGGCTTCCSHHHHHHHHTTCCSSCCCHHHHHHHH T ss_pred CCH----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHH T ss_conf 778----9999999987335762179985589854254889862887436563575555456517988877987799999 Q ss_pred HHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 22012221000100103554433013344664201342055327753222112123433005845603686221000 Q gi|254780300|r 148 AIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 148 Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) -+.+..-+++|.+++.+|. ..-|.+-+..++..-|+.+++|... +.++.+..+.||+++.. T Consensus 150 lL~~~~i~l~Gk~vvVvGr--S~iVG~Pla~lL~~~~atVt~~h~~--------------t~~l~~~~~~ADivi~a 210 (285) T 3p2o_A 150 LLKAYEIDLEGKDAVIIGA--SNIVGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVA 210 (285) T ss_dssp HHHHTTCCCTTCEEEEECC--CTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHTTCSEEEEC T ss_pred HHHHHCCCCCCCEEEEECC--CCCCHHHHHHHHHHCCCCEEEECCC--------------CHHHHHHHHHCHHHHHH T ss_conf 9999699988988999878--7533499999986463737752366--------------53477776411032231 No 40 >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding domain, 37 amino acid insertional region; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis H37RV} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Probab=94.86 E-value=0.077 Score=30.63 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=71.9 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH Q ss_conf 10001001035544330133446642013420553277532--2211212343300584560368622100011331233 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316) -+.|.+++.+| ++.+-+.....+..+|++|+++.-+.. +..... |+++ ..++++++.+|++++..-.. T Consensus 271 ~laGk~vvV~G---YG~vGkGvA~~~rg~Ga~V~V~EvDPi~ALeA~md--Gf~V-~~~~ea~~~~DifVTaTG~~---- 340 (494) T 3ce6_A 271 LIGGKKVLICG---YGDVGKGCAEAMKGQGARVSVTEIDPINALQAMME--GFDV-VTVEEAIGDADIVVTATGNK---- 340 (494) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TCEE-CCHHHHGGGCSEEEECSSSS---- T ss_pred HHCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHC--CCCC-CCHHHHHCCCCEEEEECCCC---- T ss_conf 61672699965---43040589999852899899983581887787753--8841-33999860099999916998---- Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHH Q ss_conf 34444555420235758899983799859955899876874476797 Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVA 279 (316) Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~ 279 (316) --|+.+.|+.+|++||+.-..- ...||+-+.+ T Consensus 341 -------------~vi~~eh~~~MKdgaIlaN~GH--fd~EId~~~L 372 (494) T 3ce6_A 341 -------------DIIMLEHIKAMKDHAILGNIGH--FDNEIDMAGL 372 (494) T ss_dssp -------------CSBCHHHHHHSCTTCEEEECSS--SGGGBCHHHH T ss_pred -------------CCCCHHHHHHHCCCCEEECCCC--CCCEEEHHHH T ss_conf -------------8767999983237978963466--6412338888 No 41 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Probab=94.78 E-value=0.051 Score=31.77 Aligned_cols=93 Identities=17% Similarity=0.300 Sum_probs=64.5 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.+.....+..||+++....|..- +......+++ ..++++.+..+|+|... ..- T Consensus 139 ~L~gktvGIiG---~G~IG~~va~~~~~fgm~v~~~d~~~~-~~~~~~~~~~-~~~l~ell~~sD~v~lh~Plt------ 207 (529) T 1ygy_A 139 EIFGKTVGVVG---LGRIGQLVAQRIAAFGAYVVAYDPYVS-PARAAQLGIE-LLSLDDLLARADFISVHLPKT------ 207 (529) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHTTTCEEEEECTTSC-HHHHHHHTCE-ECCHHHHHHHCSEEEECCCCS------ T ss_pred CCCCCEEEEEC---CCCHHHHHHHHHHCCCCEEEEECCCCC-CCHHHHCCCC-CCCHHHHHHHCCEEEEECCCC------ T ss_conf 13687899976---472689999997467977999448744-3302223722-167999984499999907998------ Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCC Q ss_conf 444455542023575889998379985995589 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPG 266 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcL 266 (316) .+. ..-++.+.++++|++++|..|- T Consensus 208 ------~~T--~~li~~~~~~~mK~ga~lIN~a 232 (529) T 1ygy_A 208 ------PET--AGLIDKEALAKTKPGVIIVNAA 232 (529) T ss_dssp ------TTT--TTCBCHHHHTTSCTTEEEEECS T ss_pred ------CCC--CCCCCHHHHHHCCCCCEEEECC T ss_conf ------533--1510799995258998687414 No 42 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Probab=94.70 E-value=0.14 Score=29.00 Aligned_cols=90 Identities=10% Similarity=0.108 Sum_probs=61.6 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.|.++.++| .+++.......+..+|+++....|..... .....+.++++.+..+|+|...-=.. T Consensus 161 ~l~gk~vgIiG---~G~IG~~va~~~~~fg~~v~~~~~~~~~~-----~~~~~~~~l~ell~~sDvi~l~~Plt------ 226 (333) T 3ba1_A 161 KFSGKRVGIIG---LGRIGLAVAERAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLT------ 226 (333) T ss_dssp CCTTCCEEEEC---CSHHHHHHHHHHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCC------ T ss_pred EECCCEEEEEC---CCHHHHHHHHHHHCCCCEEEEECCCCCHH-----HCCCCCCCHHHHHCCCCEEEEECCCC------ T ss_conf 23599999988---18899999998743697798640456622-----21343430333203399999918997------ Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 4445554202357588999837998599558 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) .+. ..-++.+.++.+|++++|-.+ T Consensus 227 -----~~T--~~li~~~~l~~mk~~a~lIN~ 250 (333) T 3ba1_A 227 -----PET--THIINREVIDALGPKGVLINI 250 (333) T ss_dssp -----GGG--TTCBCHHHHHHHCTTCEEEEC T ss_pred -----CCH--HHHCCHHHHHHHCCCCEEEEE T ss_conf -----303--333169999862553448983 No 43 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Probab=94.64 E-value=0.11 Score=29.52 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=67.7 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.|.++..+| .+++.......+..||+++....|..-.+. .......++++.+..+|+|..--=. T Consensus 142 el~gktlgIiG---~G~IG~~va~~~~~~gm~V~~~d~~~~~~~----~~~~~~~~l~ell~~sDiVslh~Pl------- 207 (404) T 1sc6_A 142 EARGKKLGIIG---YGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPE------- 207 (404) T ss_dssp CSTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCS------- T ss_pred CCCCEEEEEEC---CCCCCHHHHHHCCCCCCEEEECCCCCCCCC----CCCEECCHHHHHHHHCCEEEECCCC------- T ss_conf 44303689950---333103333100345736863244465311----3531103055545228799972788------- Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCH Q ss_conf 444555420235758899983799859955899876874476 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISS 276 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~ 276 (316) ..+.+ .-++.+.++++|++++|..+- ||.=|++ T Consensus 208 ----t~~T~--~lin~~~l~~mK~gailIN~a---RG~iVde 240 (404) T 1sc6_A 208 ----NPSTK--NMMGAKEISLMKPGSLLINAS---RGTVVDI 240 (404) T ss_dssp ----STTTT--TCBCHHHHHHSCTTEEEEECS---CSSSBCH T ss_pred ----CCCCC--CHHHHHHHHHCCCCCEEEECC---CCCEECH T ss_conf ----85663--515899997469986999437---7765658 No 44 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} Probab=94.59 E-value=0.042 Score=32.34 Aligned_cols=63 Identities=14% Similarity=0.149 Sum_probs=48.5 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEE Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIM 222 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~ 222 (316) .+.|.++.++| .+++.......+..||+++..+.|....+.... ......++++.+..+|+|. T Consensus 137 ~l~gktvgIiG---~G~IG~~va~~l~~fg~~v~~~~~~~~~~~~~~--~~~~~~~l~~ll~~sD~v~ 199 (324) T 3hg7_A 137 GLKGRTLLILG---TGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD--QVYQLPALNKMLAQADVIV 199 (324) T ss_dssp CSTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCS--EEECGGGHHHHHHTCSEEE T ss_pred CCCCCEEEEEE---EEECCCHHHHCCCCCCCEEECCCCCCCCCHHHH--CCCCCCCHHCCCCCCCCCE T ss_conf 76588889996---650550231024676755640323433210110--1321000100444566431 No 45 >2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A* Probab=94.56 E-value=0.083 Score=30.41 Aligned_cols=99 Identities=17% Similarity=0.332 Sum_probs=65.6 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+..+|+.+....|..-. .....++ ...++++.++.+|+|+.. ..-. T Consensus 138 ~l~g~~vgIiG---~G~IG~~~a~~l~~~g~~v~~~~~~~~~--~~~~~~~-~~~~l~ell~~sDiv~~~lPlt~----- 206 (334) T 2pi1_A 138 ELNRLTLGVIG---TGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGC-VYTSLDELLKESDVISLHVPYTK----- 206 (334) T ss_dssp CGGGSEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTC-EECCHHHHHHHCSEEEECCCCCT----- T ss_pred EECCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCCCH--HHHHCCC-EECCHHHHHHHCCEEEECCCCCH----- T ss_conf 10586899986---8989999999877458579998786511--2453382-54489999854897898478982----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCH Q ss_conf 4444555420235758899983799859955899876874476 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISS 276 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~ 276 (316) +. ..-++.+.++.+|++++|--.. ||.=|++ T Consensus 207 -------~T--~~li~~~~~~~mk~~a~lIN~a---RG~iVde 237 (334) T 2pi1_A 207 -------ET--HHMINEERISLMKDGVYLINTA---RGKVVDT 237 (334) T ss_dssp -------TT--TTCBCHHHHHHSCTTEEEEECS---CGGGBCH T ss_pred -------HH--CCCCCHHHHHHCCCCCEEEECC---CCCEECH T ss_conf -------54--0676999997369997898557---7750289 No 46 >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum 3D7} SCOP: c.2.1.4 c.23.12.3 Probab=94.50 E-value=0.087 Score=30.29 Aligned_cols=99 Identities=19% Similarity=0.234 Sum_probs=72.5 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH Q ss_conf 10001001035544330133446642013420553277532--2211212343300584560368622100011331233 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316) -+.|.+++.+| ++.+-+.....+.-+|++|.++.-+.. +..... |+++ ..++++++.+|+++|..-.. T Consensus 254 llaGK~vVV~G---YG~~GkG~A~~~rg~GA~V~VtEvDPi~ALeA~md--Gf~V-~~~~ea~~~~DifvTaTG~~---- 323 (479) T 1v8b_A 254 LISGKIVVICG---YGDVGKGCASSMKGLGARVYITEIDPICAIQAVME--GFNV-VTLDEIVDKGDFFITCTGNV---- 323 (479) T ss_dssp CCTTSEEEEEC---CSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTT--TCEE-CCHHHHTTTCSEEEECCSSS---- T ss_pred EECCCEEEEEE---CCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--CCEE-EEHHHHHCCCCEEEECCCCC---- T ss_conf 55685799984---04110426877604898899996795478998853--8763-12678531386999917998---- Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHH Q ss_conf 3444455542023575889998379985995589987687447679 Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSV 278 (316) Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v 278 (316) --|+.+.|+.+|++||+....- -..||+-.- T Consensus 324 -------------~vI~~eh~~~MKdgAIl~N~GH--fd~EId~~~ 354 (479) T 1v8b_A 324 -------------DVIKLEHLLKMKNNAVVGNIGH--FDDEIQVNE 354 (479) T ss_dssp -------------SSBCHHHHTTCCTTCEEEECSS--TTTSBCHHH T ss_pred -------------CCCCHHHHHHHCCCEEEECCCC--CCCEECHHH T ss_conf -------------6236999984138819973577--641011898 No 47 >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Probab=94.20 E-value=0.11 Score=29.60 Aligned_cols=100 Identities=18% Similarity=0.287 Sum_probs=72.4 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHH Q ss_conf 10001001035544330133446642013420553277532--2211212343300584560368622100011331233 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~ 232 (316) -+.|.+++.+| ++.+-+.....+..+|+.|+++.-+.. +..... |+++ ..++++++.+|++++..-.. T Consensus 244 l~aGK~vvV~G---YG~~GkG~A~~~rg~Ga~V~V~EvDPi~AleA~md--Gf~V-~~~~~a~~~~DifvTaTG~~---- 313 (464) T 3n58_A 244 MMAGKVAVVCG---YGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMD--GFEV-VTLDDAASTADIVVTTTGNK---- 313 (464) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT--TCEE-CCHHHHGGGCSEEEECCSSS---- T ss_pred EECCCEEEEEE---CCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--CCCC-CCHHHHHHCCCEEEECCCCC---- T ss_conf 55685699983---36121889999840899899991692689999846--9841-12889520088999837988---- Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHH Q ss_conf 34444555420235758899983799859955899876874476797 Q gi|254780300|r 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVA 279 (316) Q Consensus 233 ~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~ 279 (316) --|+.+.|..+|++||+.-..- ...||+-+.+ T Consensus 314 -------------~vi~~~h~~~MKdgailaN~GH--fd~EId~~~L 345 (464) T 3n58_A 314 -------------DVITIDHMRKMKDMCIVGNIGH--FDNEIQVAAL 345 (464) T ss_dssp -------------SSBCHHHHHHSCTTEEEEECSS--STTTBTCGGG T ss_pred -------------CCCCHHHHHHHCCCCEEECCCC--CCCHHHHHHH T ss_conf -------------7468899996558978965567--6622306888 No 48 >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} Probab=94.05 E-value=0.32 Score=26.63 Aligned_cols=191 Identities=17% Similarity=0.214 Sum_probs=105.9 Q ss_pred CCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCCCC--CCCC Q ss_conf 777417822389999999999999999644204877521289769999607873378999-9798761352111--2333 Q gi|254780300|r 5 PLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSF-EVAGKLLGVHVIN--INTK 81 (316) Q Consensus 5 ~~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SF-e~A~~~LGg~~i~--l~~~ 81 (316) .|. +|+-+.+.++=.+.|-..-.+++++. +.. ++-.+.++=..|..++.+.. +.++.++|..+.. |+.+ T Consensus 3 ~m~-ildGk~vA~~i~~~l~~~v~~l~~~~---~~~----P~LavIlvg~d~aS~~Yv~~k~k~a~~~Gi~~~~~~l~~~ 74 (285) T 3l07_A 3 AMI-LIDGKSLSKDLKERLATQVQEYKHHT---AIT----PKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEH 74 (285) T ss_dssp CCE-ECCHHHHHHHHHHHHHHHHHHHHHHH---CCC----CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTT T ss_pred CEE-EEECHHHHHHHHHHHHHHHHHHHHCC---CCC----CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC T ss_conf 769-98689999999999999999999705---999----7279999589756799999999999974885899978999 Q ss_pred CCCCCCCCCCCCHHHHHHHHC-CCCEEEECCCCCHHHH--HHCCCC------CCCCCCCC-----CCCCCCHHHHHHHHH Q ss_conf 321013334224799987413-6714652032100554--200123------42111123-----456631223322222 Q gi|254780300|r 82 NSAMKKGENIADTIATLNALR-PNIIVIRHPYSGAVNS--LMHKIK------GPSIINAG-----DGTHEHPSQALLDAF 147 (316) Q Consensus 82 ~s~~~kgEs~~Dta~vls~~~-~d~iv~R~~~~~~~~~--~a~~~s------~ppVINag-----~~~~~HP~Q~LaDl~ 147 (316) .++ |.+.+.+.-++.-- ++.|++-.|....+.+ .....+ ...-.|.| ....--||-+++ ++ T Consensus 75 ~s~----~el~~~I~~LN~D~~V~GIivQlPlP~~~~~~~i~~~I~p~KDVDGl~~~n~g~l~~~~~~~~~PcTp~a-v~ 149 (285) T 3l07_A 75 TTE----SELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKG-IM 149 (285) T ss_dssp CCH----HHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGGGBTTCCSHHHHHHHHHTCTTCCCCHHHHH-HH T ss_pred CCH----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCHHH-HH T ss_conf 889----9999999999646786779960676556106889860495558454688887400247766788988999-99 Q ss_pred HHHCCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 2201222-1000100103554433013344664201342055327753222112123433005845603686221000 Q gi|254780300|r 148 AIRHFKG-KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 148 Ti~e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) .|.++.| +++|.+++.+|. .+-|.+-+..++..-|+.|++|.-. +.++++..++||+|+.. T Consensus 150 ~lL~~~~i~l~Gk~vvVvGr--S~iVG~Pla~lL~~~~atVt~~h~~--------------t~~l~~~~~~ADIvIsA 211 (285) T 3l07_A 150 TMLREYGIKTEGAYAVVVGA--SNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVA 211 (285) T ss_dssp HHHHHTTCCCTTCEEEEECC--CTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEEC T ss_pred HHHHHHCCCCCCCEEEEECC--CCCCCHHHHHHHHCCCCEEEEEECC--------------CCCHHHHHHHCCHHHHH T ss_conf 99999599867977999889--8756558999985589749998358--------------99989986506766663 No 49 >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.62A {Jannaschia SP} Probab=93.94 E-value=0.054 Score=31.62 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=14.0 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 21289769999607873378999979876135211123 Q gi|254780300|r 42 TRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININ 79 (316) Q Consensus 42 ~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~ 79 (316) +.+.+|+++.+ =-.-+-=.++.....+-|-++..++ T Consensus 7 ~~~~~k~i~ii--G~~G~mG~~~a~~l~~~g~~V~~~~ 42 (286) T 3c24_A 7 NDVGPKTVAIL--GAGGKMGARITRKIHDSAHHLAAIE 42 (286) T ss_dssp CSCCCCEEEEE--TTTSHHHHHHHHHHHHSSSEEEEEC T ss_pred CCCCCCEEEEE--CCCCHHHHHHHHHHHHCCCEEEEEE T ss_conf 66688999998--9887899999999997869699993 No 50 >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} Probab=93.88 E-value=0.06 Score=31.34 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=61.1 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHH Q ss_conf 1000100103554433013344664201342055327753222112123433005845603686221000-113312333 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPR 233 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~ 233 (316) .+.|.++.++| .+++.......+..||+++....|....+... ........++++.++.+|+|... ..-. T Consensus 157 ~L~gk~vgIiG---~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~-~~~~~~~~~l~~ll~~sDiv~~~~Plt~----- 227 (352) T 3gg9_A 157 VLKGQTLGIFG---YGKIGQLVAGYGRAFGMNVLVWGRENSKERAR-ADGFAVAESKDALFEQSDVLSVHLRLND----- 227 (352) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSHHHHHHHH-HTTCEECSSHHHHHHHCSEEEECCCCST----- T ss_pred EECCCEEEEEE---ECHHHHHHHHHHHCCCCEEEEECCCCHHHHHH-HHCCCCCCCHHHCCCCCCEECCCCCCCH----- T ss_conf 23598999996---66899999999752797776316883155554-3012101341112344541113467876----- Q ss_pred HHHHHHHHHCCCCCCCHHHHHHCCCCCEEE Q ss_conf 444455542023575889998379985995 Q gi|254780300|r 234 SLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316) Q Consensus 234 ~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316) +. .--++.+.++.+|++++|- T Consensus 228 -------~T--~~li~~~~~~~mk~ga~lI 248 (352) T 3gg9_A 228 -------ET--RSIITVADLTRMKPTALFV 248 (352) T ss_dssp -------TT--TTCBCHHHHTTSCTTCEEE T ss_pred -------HH--HHHHHHHHHHHCCCCEEEE T ss_conf -------66--3576799986318851799 No 51 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Probab=93.85 E-value=0.32 Score=26.64 Aligned_cols=100 Identities=16% Similarity=0.256 Sum_probs=68.2 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.|.++.++| .+++.......+..||+++....|...... . ......++++.+..+|+|....=.. T Consensus 142 ~L~gk~vgI~G---~G~iG~~~a~~~~~fg~~V~~~~~~~~~~~--~--~~~~~~~l~~l~~~~Dvv~~~~plt------ 208 (333) T 1dxy_A 142 ELGQQTVGVMG---TGHIGQVAIKLFKGFGAKVIAYDPYPMKGD--H--PDFDYVSLEDLFKQSDVIDLHVPGI------ 208 (333) T ss_dssp CGGGSEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCCSSC--C--TTCEECCHHHHHHHCSEEEECCCCC------ T ss_pred CCCCCEEEEEC---CCCCCHHHHHHHCCCCCEEEEECCCCCCCC--C--CEEEEEEHHHHHCCCCEEEEECCCC------ T ss_conf 14687788846---776464777776038987998605423453--3--2134423565630455466406876------ Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHH Q ss_conf 4445554202357588999837998599558998768744767 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSS 277 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~ 277 (316) .+. ..-++.+.++.+++++++--.. ||.=|+++ T Consensus 209 -----~~T--~~li~~~~l~~mk~ga~lIN~a---RG~lvde~ 241 (333) T 1dxy_A 209 -----EQN--THIINEAAFNLMKPGAIVINTA---RPNLIDTQ 241 (333) T ss_dssp -----GGG--TTSBCHHHHHHSCTTEEEEECS---CTTSBCHH T ss_pred -----CCC--CHHHCHHHHHHCCCCCEEEECC---CCCEECHH T ss_conf -----775--1132799996355784798515---77468679 No 52 >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Probab=93.49 E-value=0.22 Score=27.65 Aligned_cols=103 Identities=17% Similarity=0.297 Sum_probs=74.0 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHH Q ss_conf 210001001035544330133446642013420553277532--221121234330058456036862210001133123 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316) -.+.|.+++.+| ++.+-+.....+..+|++|.++.-+.. +..... |+++ ..++++++.+|+++|..-.. T Consensus 216 ~~laGk~vvV~G---YG~vGrGvA~~~rg~Ga~V~V~EiDPi~aleA~md--Gf~V-~~~~ea~~~~DifvTaTGn~--- 286 (435) T 3gvp_A 216 MMFGGKQVVVCG---YGEVGKGCCAALKAMGSIVYVTEIDPICALQACMD--GFRL-VKLNEVIRQVDIVITCTGNK--- 286 (435) T ss_dssp CCCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT--TCEE-CCHHHHTTTCSEEEECSSCS--- T ss_pred CCCCCCEEEEEC---CCCCCHHHHHHHHCCCCEEEEEECCCHHHHHHHHC--CCCC-CCHHHHHHHCCEEEEECCCC--- T ss_conf 560687899967---76434368998525898389996894177899854--8653-53899763288999945987--- Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCCHHHHCC Q ss_conf 33444455542023575889998379985995589987687447679769 Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADG 281 (316) Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~Ev~~~v~d~ 281 (316) --|+.+.|+.+|+++|+.-..- ...||+-+.+.. T Consensus 287 --------------~vI~~eh~~~mKdgaIlaNaGH--fd~EId~~~L~~ 320 (435) T 3gvp_A 287 --------------NVVTREHLDRMKNSCIVCNMGH--SNTEIDVASLRT 320 (435) T ss_dssp --------------CSBCHHHHHHSCTTEEEEECSS--TTTTBTGGGGCS T ss_pred --------------CCCCHHHHHHHCCCEEEECCCC--CCCCEEHHHHHC T ss_conf --------------7277999998617909980476--772113999854 No 53 >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Probab=93.39 E-value=0.23 Score=27.56 Aligned_cols=88 Identities=13% Similarity=0.137 Sum_probs=56.9 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.|.++.++| .+++.......+..||+++....|...... ......++.+.++.+|+|...--..+ T Consensus 119 ~l~g~~vgIiG---~G~IG~~va~~l~~fg~~v~~~~~~~~~~~-----~~~~~~~~~~l~~~sDvv~~~~plt~----- 185 (290) T 3gvx_A 119 LLYGKALGILG---YGGIGRRVAHLAKAFGMRVIAYTRSSVDQN-----VDVISESPADLFRQSDFVLIAIPLTD----- 185 (290) T ss_dssp CCTTCEEEEEC---CSHHHHHHHHHHHHHTCEEEEECSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCCCT----- T ss_pred EECCCEEEEEC---CCCHHHHHHHHHCCCCCEEECCCCCCCCCC-----CCCCCCCHHHHHHHCCEEEEECCCCC----- T ss_conf 21588999989---871689999985268757860345442234-----32100106655401889766257633----- Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEE Q ss_conf 44455542023575889998379985995 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316) +. ..-++.+.++.+|++++|- T Consensus 186 ------~T--~~li~~~~l~~mk~~a~lI 206 (290) T 3gvx_A 186 ------KT--RGMVNSRLLANARKNLTIV 206 (290) T ss_dssp ------TT--TTCBSHHHHTTCCTTCEEE T ss_pred ------CC--CCCCCHHHHHHCCCCCEEE T ss_conf ------56--5520158998779834785 No 54 >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, structural genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 1li4_A* 1a7a_A* Probab=92.68 E-value=0.15 Score=28.68 Aligned_cols=128 Identities=19% Similarity=0.276 Sum_probs=76.9 Q ss_pred CCCCCCCCCCCCCC------CCHH-HHHHHHHHHHCCC-CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 23421111234566------3122-3322222220122-21000100103554433013344664201342055327753 Q gi|254780300|r 123 IKGPSIINAGDGTH------EHPS-QALLDAFAIRHFK-GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 123 ~s~ppVINag~~~~------~HP~-Q~LaDl~Ti~e~~-g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) ...| |||.-|+.- -|=| |...|- |.+.- -.+.|.+++.+| ++.+-+.....+..+|++|+++.-+. T Consensus 171 L~~P-vi~VNDs~tK~~fDN~yGtgqS~~d~--i~r~Tn~~laGk~vvV~G---YG~vGrGvA~~~rg~Ga~V~V~EvDP 244 (436) T 3h9u_A 171 LTIP-AMNVNDSVTKSKFDNLYGCRESLVDG--IKRATDVMIAGKTACVCG---YGDVGKGCAAALRGFGARVVVTEVDP 244 (436) T ss_dssp CCSC-EEECTTSHHHHTTHHHHHHHHHHHHH--HHHHHCCCCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSCH T ss_pred CCCC-EEEECCCCCCCHHCCEEEECHHHHHH--HHHHCCCCCCCCEEEEEC---CCCCCHHHHHHHCCCCCEEEEEECCH T ss_conf 7886-69845732031212305642229999--998608775786799955---55203237888535998899993681 Q ss_pred C--CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCCC Q ss_conf 2--22112123433005845603686221000113312333444455542023575889998379985995589987687 Q gi|254780300|r 195 L--LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNY 272 (316) Q Consensus 195 ~--~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg~ 272 (316) . +..... |+++ ..++++++.+|++++..-.. --|+.+.|+.+|+++|+.-..- ... T Consensus 245 i~aleA~md--Gf~V-~~~~~a~~~~DifvTaTGn~-----------------~vi~~eh~~~mKdgaIl~N~Gh--fd~ 302 (436) T 3h9u_A 245 INALQAAME--GYQV-LLVEDVVEEAHIFVTTTGND-----------------DIITSEHFPRMRDDAIVCNIGH--FDT 302 (436) T ss_dssp HHHHHHHHT--TCEE-CCHHHHTTTCSEEEECSSCS-----------------CSBCTTTGGGCCTTEEEEECSS--SGG T ss_pred HHHHHHHHC--CCEE-CCHHHHHHHCCEEEEECCCC-----------------CCCCHHHHHHHHCCCEEEECCC--CCC T ss_conf 888999863--8850-22999883489999946998-----------------7588999998757968993167--740 Q ss_pred CCCHHH Q ss_conf 447679 Q gi|254780300|r 273 EISSSV 278 (316) Q Consensus 273 Ev~~~v 278 (316) ||+-+. T Consensus 303 EId~~~ 308 (436) T 3h9u_A 303 EIQVAW 308 (436) T ss_dssp GBCHHH T ss_pred CCCHHH T ss_conf 010887 No 55 >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 Probab=92.56 E-value=0.54 Score=25.13 Aligned_cols=156 Identities=16% Similarity=0.215 Sum_probs=91.7 Q ss_pred EEEEEECCCCHHHHHH-HHHHHHHCCCCC--CCCCCCCCCCCCCCCCCHHHHHHHH-CCCCEEEECCCCCHHHH--HHCC Q ss_conf 9999607873378999-979876135211--1233332101333422479998741-36714652032100554--2001 Q gi|254780300|r 49 QINLFLETSTRTQTSF-EVAGKLLGVHVI--NINTKNSAMKKGENIADTIATLNAL-RPNIIVIRHPYSGAVNS--LMHK 122 (316) Q Consensus 49 ~~~lF~kpStRTR~SF-e~A~~~LGg~~i--~l~~~~s~~~kgEs~~Dta~vls~~-~~d~iv~R~~~~~~~~~--~a~~ 122 (316) +.++=..|..++.+.- ..++.++|..+. .|+.+.++ |.+.+.+.-++.- .++.|++-.|....+.+ .... T Consensus 38 iIlvgdd~aS~~Yv~~K~k~a~~~Gi~~~~~~l~~~~s~----~el~~~I~~LN~D~~V~GIlVQlPLP~~i~~~~i~~~ 113 (288) T 1b0a_A 38 VVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSE----AELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLER 113 (288) T ss_dssp EEEESCCHHHHHHHHHHHHHHHHHTCEECCEEECTTCCH----HHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTT T ss_pred EEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHC T ss_conf 999589764899999999999865965999978999999----9999999998479864548985699864310332104 Q ss_pred CC---C---CCCCCCCC----CCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCC Q ss_conf 23---4---21111234----56631223322222220122210001001035544330133446642013420553277 Q gi|254780300|r 123 IK---G---PSIINAGD----GTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAP 192 (316) Q Consensus 123 ~s---~---ppVINag~----~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P 192 (316) .+ . ..-.|.|. .....||-+++=+.-+.+..-+++|.+++.+|.. .-|..-+..++...|+.|++|.. T Consensus 114 I~p~KDVDGl~~~n~g~l~~~~~~~~PcTp~av~~ll~~~~i~~~Gk~vvViGrS--~iVG~Pla~ll~~~~atVt~~hs 191 (288) T 1b0a_A 114 IHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGAS--NIVGRPMSMELLLAGCTTTVTHR 191 (288) T ss_dssp SCTTTCTTCCSHHHHHHHHTTCCSSCCHHHHHHHHHHHHTTCCCTTCEEEEECCC--TTTHHHHHHHHHTTTCEEEEECS T ss_pred CCCCCCHHCCCHHHHCEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCC--CCCCHHHHHHHCCCCCCEEEECC T ss_conf 6877673006711102011687643677789999999973346589878995455--55553898860145760798357 Q ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 53222112123433005845603686221000 Q gi|254780300|r 193 ITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 193 ~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) .. .++.+..+.||+|+.. T Consensus 192 ~t--------------~~l~~~~~~ADIvisa 209 (288) T 1b0a_A 192 FT--------------KNLRHHVENADLLIVA 209 (288) T ss_dssp SC--------------SCHHHHHHHCSEEEEC T ss_pred CC--------------CCHHHHCCCCCEEHHC T ss_conf 77--------------5124203124330220 No 56 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} Probab=92.54 E-value=0.27 Score=27.14 Aligned_cols=64 Identities=11% Similarity=0.229 Sum_probs=47.6 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE Q ss_conf 100010010355443301334466420134205532775322211212343300584560368622100 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI 223 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~ 223 (316) .+.|.++.++| .+++.......+..||+++....|..-. +...... ....++++.++.+|+|.. T Consensus 143 ~l~g~~vgIiG---~G~IG~~va~~~~~fg~~v~~~~~~~~~-~~~~~~~-~~~~~l~ell~~sDiv~l 206 (333) T 2d0i_A 143 SLYGKKVGILG---MGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELK-ARYMDIDELLEKSDIVIL 206 (333) T ss_dssp CSTTCEEEEEC---CSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHT-EEECCHHHHHHHCSEEEE T ss_pred EECCCEEEEEE---CCHHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHCC-CCCCCHHHHCCCCCEEEE T ss_conf 10287799991---0789999999862568658850588871-0344307-243798895264999998 No 57 >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Probab=91.97 E-value=0.074 Score=30.75 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=53.7 Q ss_pred HHHCCCCCCCCCCCCC----CCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCC-------CC-CCCCCCCCCCCC Q ss_conf 7613521112333321----01333422479998741367146520321005542001-------23-421111234566 Q gi|254780300|r 69 KLLGVHVININTKNSA----MKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHK-------IK-GPSIINAGDGTH 136 (316) Q Consensus 69 ~~LGg~~i~l~~~~s~----~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~-------~s-~ppVINag~~~~ 136 (316) .+-|-.+..+|..... .+.|-...++..-+..- +|++++-.+...++.+.... .. .-.+|+.. . T Consensus 50 ~k~G~~V~~~d~~~~k~~~l~~~Ga~~~~s~~e~~~~-adiii~~v~~~~a~~~v~~~~~~l~~~~~~g~iiid~s--T- 125 (316) T 2uyy_A 50 LKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVST-CDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMS--T- 125 (316) T ss_dssp HHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHH-CSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS--C- T ss_pred HHCCCEEEEECCCHHHHHHHHHCCCEECCCHHHHHHC-CCEEEEECCCCHHHHHHHHCCCHHHHHCCCCCEEEECC--C- T ss_conf 9789969998399999999998599465999999845-98599972673667999635405764088998899557--8- Q ss_pred CCHHHHHHHHHHHHCCC---------CCCC----C-CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 31223322222220122---------2100----0-100103554433013344664201342055327753 Q gi|254780300|r 137 EHPSQALLDAFAIRHFK---------GKIS----N-LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 137 ~HP~Q~LaDl~Ti~e~~---------g~l~----~-l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) .+|.++..-.-.+.++. |... | +.+..-|| ..+......++..++-++..+++.+ T Consensus 126 ~~p~~~~~~~~~l~~~g~~~vdapv~g~~~~a~~g~l~~~~gG~---~~~~~~~~~il~~~~~~~~~~G~~G 194 (316) T 2uyy_A 126 VDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGD---RGLYEDCSSCFQAMGKTSFFLGEVG 194 (316) T ss_dssp CCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEEC---HHHHHHTHHHHHHHEEEEEECSSTT T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEECCCC---HHHHHHHCHHHHHHCCEEEEECCCC T ss_conf 87677999999999759937725777880405677257644886---7998862216775158279943865 No 58 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Probab=91.96 E-value=0.47 Score=25.53 Aligned_cols=89 Identities=19% Similarity=0.234 Sum_probs=59.1 Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE-EECCHHHHHH Q ss_conf 000100103554433013344664201342055327753222112123433005845603686221000-1133123334 Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL-RMQQERIPRS 234 (316) Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~-~~~~e~~~~~ 234 (316) +.+.++..+| .+++.......+..+|+++....|...... ..+....++++.++.+|+|..- ..- T Consensus 154 l~~k~~giiG---~G~iG~~va~~~~~~g~~v~~~~~~~~~~~----~~~~~~~~L~ell~~sDiIslh~Plt------- 219 (416) T 3k5p_A 154 VRGKTLGIVG---YGNIGSQVGNLAESLGMTVRYYDTSDKLQY----GNVKPAASLDELLKTSDVVSLHVPSS------- 219 (416) T ss_dssp STTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECTTCCCCB----TTBEECSSHHHHHHHCSEEEECCCC-------- T ss_pred ECCEEEEEEE---CCCCCCEEEEECCCCCCEEEEECCCCCCHH----CCEEECCCHHHHHHHCCEEEECCCCC------- T ss_conf 0460899981---266421112310135515776316544010----23121489999975288888714530------- Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 4445554202357588999837998599558 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) .+. ..-++.+.++.+|++++|.-+ T Consensus 220 -----~~T--~~lIn~~~l~~mK~ga~lIN~ 243 (416) T 3k5p_A 220 -----KST--SKLITEAKLRKMKKGAFLINN 243 (416) T ss_dssp -----------CCBCHHHHHHSCTTEEEEEC T ss_pred -----CCC--CCHHHHHHHHCCCCCCEEEEC T ss_conf -----023--266689999508999868852 No 59 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Probab=90.16 E-value=0.95 Score=23.57 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=61.2 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHH Q ss_conf 10001001035544330133446642013420553277532221121234330058456036862210001133123334 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRS 234 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~ 234 (316) .+.+.++.++| .+++.......+..+|+.+....|... +.... .....++++.+..+|+|....=.. T Consensus 143 ~l~~~~vgi~G---~G~ig~~~a~~l~~~~~~v~~~~~~~~--~~~~~--~~~~~~l~~ll~~sDiv~~~~plt------ 209 (331) T 1xdw_A 143 EVRNCTVGVVG---LGRIGRVAAQIFHGMGATVIGEDVFEI--KGIED--YCTQVSLDEVLEKSDIITIHAPYI------ 209 (331) T ss_dssp CGGGSEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSSCC--CSCTT--TCEECCHHHHHHHCSEEEECCCCC------ T ss_pred EEECCEEEEEC---CCCCCHHHHHHHHCCCCEEECCCCCCC--CCCCC--EEEECCHHHHHHHCCCCCCCCCCC------ T ss_conf 43142999986---676443789876446834630444333--34433--013235777543315554346887------ Q ss_pred HHHHHHHHCCCCCCCHHHHHHCCCCCEEECC Q ss_conf 4445554202357588999837998599558 Q gi|254780300|r 235 LIPSIREYKHVYSLDEKKLKYAKKDALVMHP 265 (316) Q Consensus 235 ~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc 265 (316) .+. ..-++.+.++.+|++++|--. T Consensus 210 -----~~T--~~li~~~~l~~mk~~a~lIN~ 233 (331) T 1xdw_A 210 -----KEN--GAVVTRDFLKKMKDGAILVNC 233 (331) T ss_dssp -----TTT--CCSBCHHHHHTSCTTEEEEEC T ss_pred -----CCC--CCCCCHHHHHHCCCCCEEEEE T ss_conf -----456--674689999608999889991 No 60 >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with cofactor and product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Probab=90.12 E-value=0.079 Score=30.57 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=48.6 Q ss_pred CCCCCCCEEECC--------CCCCCCHHHHHHHHHHCCCCEEEECCCCC-----------CCCCCCCCCCCCCCCCHHHC Q ss_conf 210001001035--------54433013344664201342055327753-----------22211212343300584560 Q gi|254780300|r 154 GKISNLHIAICG--------DILHSRVARSDIMLLNTMGARIRVIAPIT-----------LLPKDISNMGVEVFHDMQKG 214 (316) Q Consensus 154 g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~g~~v~~~~P~~-----------~~~~~~~~~~~~~~~d~~ea 214 (316) +.+.+.+|++.| |+++| -+..++..+...|++|.+.-|-- +........+.....+++++ T Consensus 309 ~~~~~~ki~ilGlafK~~t~D~R~S-pa~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (436) T 1mv8_A 309 TSHDTRKVGLLGLSFKAGTDDLRES-PLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEV 387 (436) T ss_dssp TTSSCCEEEEECCSSSTTCCCCTTC-HHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHH T ss_pred HHCCCCEEEEECCCCCCCCCCCCCC-HHHHHHHHHHHCCCEEEEECCCCCHHHHCCCHHHHCCCCCCCCCCEECCCHHHH T ss_conf 6305878966447558999854467-099999999978898999899988777502012220012444453013889999 Q ss_pred CCCCCEEEEEEEC Q ss_conf 3686221000113 Q gi|254780300|r 215 LKNVDVIMILRMQ 227 (316) Q Consensus 215 ~~~aDvv~~~~~~ 227 (316) ++++|+|+....+ T Consensus 388 ~~~~D~iii~t~h 400 (436) T 1mv8_A 388 VASSDVLVLGNGD 400 (436) T ss_dssp HHHCSEEEECSCC T ss_pred HHCCCEEEEECCC T ss_conf 8559999990688 No 61 >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP, oxidoreductase, PSI; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A Probab=88.88 E-value=1.2 Score=22.95 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=97.8 Q ss_pred EEEECCCCHHHHHH-HHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHH-CCCCEEEECCCCCHHHH--HHCCCC Q ss_conf 99607873378999-9798761352111--233332101333422479998741-36714652032100554--200123 Q gi|254780300|r 51 NLFLETSTRTQTSF-EVAGKLLGVHVIN--INTKNSAMKKGENIADTIATLNAL-RPNIIVIRHPYSGAVNS--LMHKIK 124 (316) Q Consensus 51 ~lF~kpStRTR~SF-e~A~~~LGg~~i~--l~~~~s~~~kgEs~~Dta~vls~~-~~d~iv~R~~~~~~~~~--~a~~~s 124 (316) +.=..|..++.+.. ..++..+|..... ++.+.++ |.+.+.+..++.- .++.|++-.|....+.+ .....+ T Consensus 39 lvg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~e----~el~~~I~~lN~d~~v~GIlvqlPlP~~~~~~~i~~~I~ 114 (281) T 2c2x_A 39 LVGDDPGSQAYVRGKHADCAKVGITSIRRDLPADIST----ATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVD 114 (281) T ss_dssp EESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCH----HHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSC T ss_pred EECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHEEECC T ss_conf 9699878999999999999985997998526887789----999999999828986553788535865444412022027 Q ss_pred ---CC---CCCCC-----CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCC--CCEEEECC Q ss_conf ---42---11112-----3456631223322222220122210001001035544330133446642013--42055327 Q gi|254780300|r 125 ---GP---SIINA-----GDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTM--GARIRVIA 191 (316) Q Consensus 125 ---~p---pVINa-----g~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~--g~~v~~~~ 191 (316) .+ .-.|. |.. ...||-+++=+--+.+...+++|.+++.+|.. .-|..-+..++... ++.+++|. T Consensus 115 p~KDVDGl~~~N~g~l~~~~~-~~~PcT~~ai~~lL~~~~i~l~Gk~vvViGrS--~iVG~Pla~lL~~~~~~atvt~~h 191 (281) T 2c2x_A 115 PAKDADGLHPTNLGRLVLGTP-APLPCTPRGIVHLLRRYDISIAGAHVVVIGRG--VTVGRPLGLLLTRRSENATVTLCH 191 (281) T ss_dssp GGGBTTSCCHHHHHHHHHTCC-CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCC--TTTHHHHHHHHTSTTTCCEEEEEC T ss_pred CCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECC--CCCHHHHHHHHHHHHCCCEEEEEC T ss_conf 333656556246631024676-66885089999999996988768668998058--752789999974543278068707 Q ss_pred CCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCC Q ss_conf 7532221121234330058456036862210001133123334444555420235758899983799859955899 Q gi|254780300|r 192 PITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGP 267 (316) Q Consensus 192 P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP 267 (316) .. +.++++..++||+|++..- .. +-++.+++ ++++++-.+.- T Consensus 192 ~~--------------T~~l~~~~~~ADIvisavG-~p----------------~~i~~~~i---k~gavvIDvG~ 233 (281) T 2c2x_A 192 TG--------------TRDLPALTRQADIVVAAVG-VA----------------HLLTADMV---RPGAAVIDVGV 233 (281) T ss_dssp TT--------------CSCHHHHHTTCSEEEECSC-CT----------------TCBCGGGS---CTTCEEEECCE T ss_pred CC--------------CCCHHHHHHHCCHHHHHCC-CC----------------CCCCHHHC---CCCCEEEEECC T ss_conf 88--------------8577999872831443327-76----------------53668565---89958999427 No 62 >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Probab=88.30 E-value=0.44 Score=25.70 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=48.4 Q ss_pred CCCCCCCEEECC--------CCCCCCHHHHHHHHHHCCCCEEEECCCCCCC-CCCCCCCCCCCCCCHHHCCCCCCEEEE- Q ss_conf 210001001035--------5443301334466420134205532775322-211212343300584560368622100- Q gi|254780300|r 154 GKISNLHIAICG--------DILHSRVARSDIMLLNTMGARIRVIAPITLL-PKDISNMGVEVFHDMQKGLKNVDVIMI- 223 (316) Q Consensus 154 g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~-~~~~~~~~~~~~~d~~ea~~~aDvv~~- 223 (316) +.+++.+|+++| |.++| .+..++..+...|++|.+.-|.... .....+..+..+.++.++++++|+|+. T Consensus 314 ~~~~~~~I~IlGlayKp~t~d~R~S-ps~~l~~~L~~~g~~V~~yDP~v~~~~~~~~~~~~~~~~~~~ea~~~aD~iii~ 392 (450) T 3gg2_A 314 GNVQGRCVAIWGLSFKPGTDDMREA-PSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV 392 (450) T ss_dssp TCCTTCEEEEECCSSSTTCCCCTTC-HHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC T ss_pred HCCCCCCEEEECCCCCCCCHHHCCC-HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCEEEECCHHHHHCCCCEEEEE T ss_conf 2025882002324248973111254-179999999986995899899788789997278807738999997069889990 Q ss_pred EEECC Q ss_conf 01133 Q gi|254780300|r 224 LRMQQ 228 (316) Q Consensus 224 ~~~~~ 228 (316) +.|++ T Consensus 393 t~h~~ 397 (450) T 3gg2_A 393 TEWKE 397 (450) T ss_dssp SCCGG T ss_pred CCCHH T ss_conf 39857 No 63 >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* Probab=88.26 E-value=0.38 Score=26.14 Aligned_cols=74 Identities=19% Similarity=0.179 Sum_probs=48.7 Q ss_pred CCCCCCCCEEECC--------CCCCCCHHHHHHHHHHCCCCEEEECCCCCCC---------CC----CCCCCCCCCCCCH Q ss_conf 2210001001035--------5443301334466420134205532775322---------21----1212343300584 Q gi|254780300|r 153 KGKISNLHIAICG--------DILHSRVARSDIMLLNTMGARIRVIAPITLL---------PK----DISNMGVEVFHDM 211 (316) Q Consensus 153 ~g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~---------~~----~~~~~~~~~~~d~ 211 (316) .+++++.+|+..| |+++| .+--++..+...|++|.+.-|..-. +. +.....+....|+ T Consensus 324 ~~~~~~~~I~ilGlafK~~t~d~R~S-~~~~l~~~L~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (467) T 2q3e_A 324 FNTVTDKKIAILGFAFKKDTGDTRES-SSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDP 402 (467) T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTC-HHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSH T ss_pred CCCCCCCEEEEEEEECCCCCCCCCCC-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCCCHHHHCCCCEEEECCH T ss_conf 26668998999986206888876568-58999999997799899989988988986651454420123214532550899 Q ss_pred HHCCCCCCEEE-EEEEC Q ss_conf 56036862210-00113 Q gi|254780300|r 212 QKGLKNVDVIM-ILRMQ 227 (316) Q Consensus 212 ~ea~~~aDvv~-~~~~~ 227 (316) +++++++|+|+ .+.|. T Consensus 403 ~ea~~~aD~vii~t~h~ 419 (467) T 2q3e_A 403 YEACDGAHAVVICTEWD 419 (467) T ss_dssp HHHHTTCSEEEECSCCG T ss_pred HHHHCCCCEEEEECCCH T ss_conf 99974698899962885 No 64 >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 Probab=88.06 E-value=0.4 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=11.7 Q ss_pred HHHHHHCCCCEEEECCCCCC Q ss_conf 46642013420553277532 Q gi|254780300|r 176 DIMLLNTMGARIRVIAPITL 195 (316) Q Consensus 176 ~~~~~~~~g~~v~~~~P~~~ 195 (316) ....+..+|..+....|++. T Consensus 151 ~~~~~~~~g~~~~~~~~~~H 170 (279) T 2f1k_A 151 LRSVLEPLGVKIYLCTPADH 170 (279) T ss_dssp HHHHHGGGTCEEEECCHHHH T ss_pred HHHHHHCCCCEEEECCHHHH T ss_conf 98766505998875348889 No 65 >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreductase, porphyrin biosynthesis; 2.30A {Bacillus megaterium} Probab=87.25 E-value=1 Score=23.40 Aligned_cols=81 Identities=17% Similarity=0.198 Sum_probs=51.5 Q ss_pred HHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC--CCCCCCCCCCCCCC-CH-HHCCC Q ss_conf 3322222220122210001001035544330133446642013420553277532--22112123433005-84-56036 Q gi|254780300|r 141 QALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL--LPKDISNMGVEVFH-DM-QKGLK 216 (316) Q Consensus 141 Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~--~~~~~~~~~~~~~~-d~-~ea~~ 216 (316) -.-.|-.-+.=.+=+++|.+|..+|. ++|+..-+..+...|++|++++|+-. +........++... +. .+-+. T Consensus 14 ~~~~~~~~~fPlfl~L~~k~VLVVGg---G~vA~rKi~~Ll~~ga~VtVisp~~~~el~~l~~~~~i~~~~r~~~~~dl~ 90 (223) T 3dfz_A 14 SGHIEGRHMYTVMLDLKGRSVLVVGG---GTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLL 90 (223) T ss_dssp --------CCEEEECCTTCCEEEECC---SHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSS T ss_pred CCHHHCCCCCCEEEECCCCEEEEECC---CHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCEEEECCCCHHHCC T ss_conf 34210596226089839985999898---899999999997489979999388998999999769969995688866718 Q ss_pred CCCEEEEE Q ss_conf 86221000 Q gi|254780300|r 217 NVDVIMIL 224 (316) Q Consensus 217 ~aDvv~~~ 224 (316) +++.|+.. T Consensus 91 ~~~lViaA 98 (223) T 3dfz_A 91 NVFFIVVA 98 (223) T ss_dssp SCSEEEEC T ss_pred CCCEEEEC T ss_conf 96499977 No 66 >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogenase; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Probab=86.77 E-value=0.83 Score=23.93 Aligned_cols=69 Identities=22% Similarity=0.318 Sum_probs=49.6 Q ss_pred CCCCCCCCEEECC--------CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEE- Q ss_conf 2210001001035--------5443301334466420134205532775322211212343300584560368622100- Q gi|254780300|r 153 KGKISNLHIAICG--------DILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI- 223 (316) Q Consensus 153 ~g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~- 223 (316) .+.+++.+|+.+| |+++| .+.-++..+..-|++|.+.-|--. ...+++...+++++++++|+|+. T Consensus 348 ~~~~~~~~I~ilGlafK~~t~d~R~S-ps~~l~~~L~~~g~~V~iyDP~v~-----~~~~~~~~~~l~~~~~~aD~ivi~ 421 (478) T 3g79_A 348 GKKMDGSKVAMLGWAFIKDSDDARNT-PSEPYRDLCLKAGASVMVHDPYVV-----NYPGVEISDNLEEVVRNADAIVVL 421 (478) T ss_dssp TCCSTTCEEEEECSSSSTTCSCCTTC-THHHHHHHHHHHTCEEEEECSSCC-----CBTTBCEESCHHHHHTTCSEEEEC T ss_pred CCCCCCCEEEEEEECCCCCCCCHHCC-CHHHHHHHHHHCCCEEEEECCCCC-----CCCCCEECCCHHHHHHCCCEEEEE T ss_conf 78757866789863147999741018-599999999968898999899656-----778975628999998379889996 Q ss_pred EEEC Q ss_conf 0113 Q gi|254780300|r 224 LRMQ 227 (316) Q Consensus 224 ~~~~ 227 (316) +.|. T Consensus 422 t~h~ 425 (478) T 3g79_A 422 AGHS 425 (478) T ss_dssp SCCH T ss_pred CCCH T ss_conf 6986 No 67 >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative; 2.19A {Bacteroides fragilis nctc 9343} Probab=86.74 E-value=0.39 Score=26.05 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=10.3 Q ss_pred HHHHHHHHHCCCCEEEECCC Q ss_conf 33446642013420553277 Q gi|254780300|r 173 ARSDIMLLNTMGARIRVIAP 192 (316) Q Consensus 173 ~~S~~~~~~~~g~~v~~~~P 192 (316) ......++..+|..+....+ T Consensus 149 ~~~~~~l~~~lg~~~~~~~~ 168 (266) T 3d1l_A 149 AAFLKAIASTLSNRVYDADS 168 (266) T ss_dssp HHHHHHHHHTTCSCEEECCH T ss_pred HHHHHHHHHHHCCCEEEEEC T ss_conf 99999999981990899723 No 68 >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Probab=85.67 E-value=0.43 Score=25.76 Aligned_cols=135 Identities=10% Similarity=0.132 Sum_probs=68.0 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHH---CCCCCC---CCCCCCEEEEE-EECCCCHHHHHHHHHHHHHCCCCCCCCCCC Q ss_conf 78223899999999999999996442---048775---21289769999-607873378999979876135211123333 Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKS---HFNPST---TRLQGLTQINL-FLETSTRTQTSFEVAGKLLGVHVININTKN 82 (316) Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~---~~~~~~---~~L~gk~~~~l-F~kpStRTR~SFe~A~~~LGg~~i~l~~~~ 82 (316) |.+-|..++-++.+-..+..+.+... +....+ ..|+|...+.. |.-....-|..=|.--.+.|- +..++ T Consensus 60 i~L~DId~~rL~~~~~~~~~~~~~~~~~~~v~~ttD~~eAl~gADfVi~t~~vGg~~~r~~De~Ip~kyGi----~g~eT 135 (472) T 1u8x_X 60 LKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGV----VGQET 135 (472) T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTTHHHHHHHHHHHHHTTTC----CCCSS T ss_pred EEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCC----CCCCC T ss_conf 99982888899999999999999609980799958999985799999984122886426888754675591----56413 Q ss_pred CCC-------CCCCCCCCHHHHHHHHCCCCEEEECCCCCH-HHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 210-------133342247999874136714652032100-55420-01234211112345663122332222222 Q gi|254780300|r 83 SAM-------KKGENIADTIATLNALRPNIIVIRHPYSGA-VNSLM-HKIKGPSIINAGDGTHEHPSQALLDAFAI 149 (316) Q Consensus 83 s~~-------~kgEs~~Dta~vls~~~~d~iv~R~~~~~~-~~~~a-~~~s~ppVINag~~~~~HP~Q~LaDl~Ti 149 (316) .+. ..=--+.|.++.+..+.+|++++=....-. +.+.. +.+....||..|++.. +-.+.++.++-. T Consensus 136 ~G~GG~~~alRtipv~leIa~~I~e~~PdAwllNyTNP~~ivt~al~r~~p~~kvvGlCh~~~-~~~~~la~~Lg~ 210 (472) T 1u8x_X 136 CGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPV-GIEDRMAQILGL 210 (472) T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTTCCEEECCSHHH-HHHHHHHHHHTC T ss_pred CCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCHH-HHHHHHHHHCCC T ss_conf 562388874032899999999999669984999817868999999998589988898798679-999999998399 No 69 >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initiative; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Probab=83.81 E-value=2.2 Score=21.25 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=38.8 Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCHHH--HHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECC Q ss_conf 4224799987413671465203210055--420012342111123456631223322222220122210001001035 Q gi|254780300|r 90 NIADTIATLNALRPNIIVIRHPYSGAVN--SLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICG 165 (316) Q Consensus 90 s~~Dta~vls~~~~d~iv~R~~~~~~~~--~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vG 165 (316) -+.|.++-+..|.+|++++=....-.+. .+.+.+...+||..|++.. +....+|..+-+ +.+.+.+-+.| T Consensus 131 v~~~i~~~i~~~~P~A~lln~TNP~~i~t~a~~r~~p~~kviGlC~~~~-~~r~~lA~~Lgv-----~~~~v~~~~~G 202 (450) T 1s6y_A 131 VILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQEKVVGLCNVPI-GMRMGVAKLLGV-----DADRVHIDFAG 202 (450) T ss_dssp HHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCCCCCEEECCSHHH-HHHHHHHHHHTS-----CGGGEEEEEEE T ss_pred HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCCCEEECCCCHH-HHHHHHHHHHCC-----CHHHCEEEEEC T ss_conf 9999999875159984999978868999999998689987771177519-999999999498-----97765432556 No 70 >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Probab=83.74 E-value=0.32 Score=26.61 Aligned_cols=86 Identities=10% Similarity=0.031 Sum_probs=35.4 Q ss_pred CCCEEEECCCCCHHHHHHC------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC-------CCC----CCC-CCEEEC Q ss_conf 6714652032100554200------1234211112345663122332222222012-------221----000-100103 Q gi|254780300|r 103 PNIIVIRHPYSGAVNSLMH------KIKGPSIINAGDGTHEHPSQALLDAFAIRHF-------KGK----ISN-LHIAIC 164 (316) Q Consensus 103 ~d~iv~R~~~~~~~~~~a~------~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~-------~g~----l~~-l~ia~v 164 (316) +|++++-.+....+.+... ......||+... ..-.-++.+++...=.-. .|. -.+ +.+..- T Consensus 66 ~d~Vi~~v~~~~~~~~vl~~~~~~~~~~g~~iid~st-~~p~~~~~~~~~~~~~g~~~ldapv~g~~~~a~~~~~~~~~~ 144 (306) T 3l6d_A 66 SPATIFVLLDNHATHEVLGMPGVARALAHRTIVDYTT-NAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHT 144 (306) T ss_dssp SSEEEECCSSHHHHHHHHTSTTHHHHTTTCEEEECCC-CCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEE T ss_pred CCEEEECCCCHHHHHHHHHHHCCHHHCCCCEEECCCC-CCHHHHHHHHHHHCCCCCEEEECEEECCCCCCCCCCEEEEEC T ss_conf 9978960688999999987203033235664631687-870466888866502682365132312543245664279973 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCC Q ss_conf 5544330133446642013420553277 Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIRVIAP 192 (316) Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~~~~P 192 (316) || .........++..+|.++..+++ T Consensus 145 G~---~~~~~~~~~ll~~l~~~~~~~g~ 169 (306) T 3l6d_A 145 GD---REAFEQHRALLEGLAGHTVFLPW 169 (306) T ss_dssp EC---HHHHHHHHHHHHTTCSEEEECCH T ss_pred CC---HHHHHHHHHHHHHHCCCEEECCC T ss_conf 76---66788999999995895498377 No 71 >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Probab=83.58 E-value=0.52 Score=25.23 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=40.1 Q ss_pred HHHHCCCCEEEECCCCCHHHHHH-------CCC-CCCCCCCCCCCCCCCHHH--HHHHHHHHHCCCCC-C---------- Q ss_conf 87413671465203210055420-------012-342111123456631223--32222222012221-0---------- Q gi|254780300|r 98 LNALRPNIIVIRHPYSGAVNSLM-------HKI-KGPSIINAGDGTHEHPSQ--ALLDAFAIRHFKGK-I---------- 156 (316) Q Consensus 98 ls~~~~d~iv~R~~~~~~~~~~a-------~~~-s~ppVINag~~~~~HP~Q--~LaDl~Ti~e~~g~-l---------- 156 (316) +... +|+++.-.++...+.+.. ... +.-.||+.. . .+|.+ .++..+ .++... + T Consensus 57 ~~~~-~dvv~~~l~~~~a~~~v~~~~~~i~~~~~~g~iiid~s--T-~~p~~~~~~~~~~--~~~g~~~ldaPVsGg~~~ 130 (301) T 3cky_A 57 VAAA-SDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMS--S-VSPSSTLKMAKVA--AEKGIDYVDAPVSGGTKG 130 (301) T ss_dssp HHHH-CSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECC--C-CCHHHHHHHHHHH--HHTTCEEEECCEESHHHH T ss_pred HHHC-CCEEEEEECCHHHHHHHHHCCCCHHHHCCCCCEEEECC--C-CCHHHHHHHHHHH--HHCCCEEEECCCCCCHHH T ss_conf 9845-87368850568899999817503655258992899899--9-9989999999999--976992892477588778 Q ss_pred --CC-CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf --00-100103554433013344664201342055327753 Q gi|254780300|r 157 --SN-LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 157 --~~-l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) .| +.+..-|| -.+......++..++-++..++|.+ T Consensus 131 A~~g~l~i~~gG~---~~~~~~~~~~l~~~~~~i~~~G~~G 168 (301) T 3cky_A 131 AEAGTLTIMVGAS---EAVFEKIQPVLSVIGKDIYHVGDTG 168 (301) T ss_dssp HHHTCEEEEEESC---HHHHHHHHHHHHHHEEEEEEEESTT T ss_pred HHCCCEEEEECCC---HHHHHHCCHHHHHHCCCEEEECCCC T ss_conf 6249758984799---9999867099998489779958975 No 72 >2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas aeruginosa PA01, PSI-2, structural genomics; HET: PG4; 2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A* Probab=83.40 E-value=0.62 Score=24.78 Aligned_cols=95 Identities=21% Similarity=0.216 Sum_probs=45.9 Q ss_pred CHHHHHHHHCCCCEEEECCCCCHHHHHHC-------CC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-----CCC-- Q ss_conf 47999874136714652032100554200-------12-3421111234566312233222222201222-----100-- Q gi|254780300|r 93 DTIATLNALRPNIIVIRHPYSGAVNSLMH-------KI-KGPSIINAGDGTHEHPSQALLDAFAIRHFKG-----KIS-- 157 (316) Q Consensus 93 Dta~vls~~~~d~iv~R~~~~~~~~~~a~-------~~-s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g-----~l~-- 157 (316) |+..-+..- +|++++=.+....+.+... .. ..-.||+.. . .+|..+-.=.-.+.++.. .+. T Consensus 51 ~s~~e~~~~-~dvvi~~l~~~~~~~~V~~~~~g~~~~~~~g~iiid~s--T-~~p~~~~~~~~~~~~~g~~~vdapvsGg 126 (302) T 2h78_A 51 RSARDAVQG-ADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECS--T-IAPTSARKIHAAARERGLAMLDAPVSGG 126 (302) T ss_dssp SSHHHHHTT-CSEEEECCSCHHHHHHHHHSSSCGGGSSCSSCEEEECS--C-CCHHHHHHHHHHHHHTTCCEEECCEESC T ss_pred CCHHHHHHC-CCCCCCCCCCHHHHHHHHHCCCCHHHCCCCCCEEEECC--C-CCHHHHHHHHHHHHHCCCCEEECCCCCC T ss_conf 899999856-78611038947779999716300532589997899888--8-9989999999999976992892588799 Q ss_pred ------C-CCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf ------0-100103554433013344664201342055327753 Q gi|254780300|r 158 ------N-LHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 158 ------~-l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) | +.+..-|| ..+.......+..++.++..++|.+ T Consensus 127 ~~~a~~g~l~~~~gG~---~~~~~~~~~vL~~~~~~v~~~G~~G 167 (302) T 2h78_A 127 TAGAAAGTLTFMVGGD---AEALEKARPLFEAMGRNIFHAGPDG 167 (302) T ss_dssp HHHHHHTCEEEEEESC---HHHHHHHHHHHHHHEEEEEEEESTT T ss_pred HHHHHCCCEEEEECCC---HHHHHHHHHHHHHHCCEEEEECCCC T ss_conf 7787529879998378---9999999999998479189968956 No 73 >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Probab=82.33 E-value=0.47 Score=25.52 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=43.9 Q ss_pred CHHHHHHHHCCCCEEEECCCCCHHHHHH-------CCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---------CC Q ss_conf 4799987413671465203210055420-------012-342111123456631223322222220122---------21 Q gi|254780300|r 93 DTIATLNALRPNIIVIRHPYSGAVNSLM-------HKI-KGPSIINAGDGTHEHPSQALLDAFAIRHFK---------GK 155 (316) Q Consensus 93 Dta~vls~~~~d~iv~R~~~~~~~~~~a-------~~~-s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~---------g~ 155 (316) ++..-+..- +|++++=.+....+.+.. +.. ....||+..... -.=+|.++..+. ++. |. T Consensus 53 ~s~~e~~~~-~divi~~v~~~~~v~~v~~~~~~i~~~~~~g~iiid~sT~~-p~~~~~~~~~~~--~~G~~~vd~pv~gg 128 (299) T 1vpd_A 53 STAKAIAEQ-CDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIA-PLASREISDALK--AKGVEMLDAPVSGG 128 (299) T ss_dssp SSHHHHHHH-CSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCC-HHHHHHHHHHHH--TTTCEEEECCEESH T ss_pred CCHHHHHHC-CCEEEEECCCHHHHHHHHHCCHHHHHCCCCCCEEEECCCCC-HHHHHHHHHHHH--HCCCEEECCCCCCC T ss_conf 899999847-99899975987899999958246873499999899899897-689999999999--76995877788588 Q ss_pred ----CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf ----000100103554433013344664201342055327753 Q gi|254780300|r 156 ----ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 156 ----l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) .+|--..++|. ...+.......+..++-++..+++.+ T Consensus 129 ~~~a~~g~l~i~~gg--~~~~~~~~~~~l~~~~~~~~~~G~~G 169 (299) T 1vpd_A 129 EPKAIDGTLSVMVGG--DKAIFDKYYDLMKAMAGSVVHTGDIG 169 (299) T ss_dssp HHHHHHTCEEEEEES--CHHHHHHHHHHHHTTEEEEEEEESTT T ss_pred CHHHHCCCEEEEEEC--CHHHHHHHHHHHHHHCCCCEECCCCC T ss_conf 036634971799937--58888999999999728856539955 No 74 >2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A* Probab=81.07 E-value=2.4 Score=20.93 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=9.2 Q ss_pred HHHCCHHHHHHHHHHHHH Q ss_conf 223899999999999999 Q gi|254780300|r 12 VKDLSMQDVNYLLDRANE 29 (316) Q Consensus 12 ~~dl~~~el~~ll~~A~~ 29 (316) +.|.+++.+..-.+...+ T Consensus 34 l~D~~~~~l~~~~~~i~~ 51 (319) T 2dpo_A 34 LYDIEPRQITGALENIRK 51 (319) T ss_dssp EECSCHHHHHHHHHHHHH T ss_pred EEECCHHHHHHHHHHHHH T ss_conf 997998999999999999 No 75 >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, protein structure initiative; 1.88A {Caenorhabditis elegans} Probab=81.05 E-value=1.1 Score=23.16 Aligned_cols=74 Identities=22% Similarity=0.178 Sum_probs=48.0 Q ss_pred CCCCCCCCEEECC--------CCCCCCHHHHHHHHHHCCCCEEEECCCCCCC---CCC------C--CCCCCCCCCCHHH Q ss_conf 2210001001035--------5443301334466420134205532775322---211------2--1234330058456 Q gi|254780300|r 153 KGKISNLHIAICG--------DILHSRVARSDIMLLNTMGARIRVIAPITLL---PKD------I--SNMGVEVFHDMQK 213 (316) Q Consensus 153 ~g~l~~l~ia~vG--------D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~---~~~------~--~~~~~~~~~d~~e 213 (316) .+++++.+|+..| |+++| .+--++..+...|++|.+.-|---. ..+ . ....+....|+.+ T Consensus 330 ~~~~~~~~I~ilGlafK~~t~d~R~S-ps~~li~~L~~~g~~V~~~DP~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 408 (481) T 2o3j_A 330 FNTVTDKKIAIFGFAFKKNTGDTRES-SAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYA 408 (481) T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTC-HHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHH T ss_pred CCCCCCCEEEEEEECCCCCCCCCCCC-HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCEECCCHHH T ss_conf 48877767999731257777301035-08999999998799899989968878876666420003443320310389999 Q ss_pred CCCCCCEEE-EEEEC Q ss_conf 036862210-00113 Q gi|254780300|r 214 GLKNVDVIM-ILRMQ 227 (316) Q Consensus 214 a~~~aDvv~-~~~~~ 227 (316) +++++|+|+ .+.|. T Consensus 409 a~~~aD~vIi~t~h~ 423 (481) T 2o3j_A 409 AARGAHAIVVLTEWD 423 (481) T ss_dssp HHTTCSEEEECSCCG T ss_pred HHCCCCEEEEECCCH T ss_conf 965798899964986 No 76 >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Probab=80.91 E-value=1.9 Score=21.65 Aligned_cols=11 Identities=9% Similarity=0.202 Sum_probs=3.9 Q ss_pred HHHHHHHHHCC Q ss_conf 99979876135 Q gi|254780300|r 63 SFEVAGKLLGV 73 (316) Q Consensus 63 SFe~A~~~LGg 73 (316) +|..+...+.. T Consensus 22 a~~l~~~~l~~ 32 (317) T 3d0o_A 22 AFSLVNQSIVD 32 (317) T ss_dssp HHHHHHHCSCS T ss_pred HHHHHHCCCCC T ss_conf 99997079988 No 77 >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* Probab=80.15 E-value=2.2 Score=21.18 Aligned_cols=17 Identities=6% Similarity=-0.103 Sum_probs=7.4 Q ss_pred HHHCCHHHHHHHHHHHH Q ss_conf 22389999999999999 Q gi|254780300|r 12 VKDLSMQDVNYLLDRAN 28 (316) Q Consensus 12 ~~dl~~~el~~ll~~A~ 28 (316) +-|.+++.++...++.. T Consensus 43 l~D~~~e~l~~~~~~i~ 59 (302) T 1f0y_A 43 LVDQTEDILAKSKKGIE 59 (302) T ss_dssp EECSCHHHHHHHHHHHH T ss_pred EEECCHHHHHHHHHHHH T ss_conf 99898789999999999 No 78 >3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Probab=79.44 E-value=1.9 Score=21.53 Aligned_cols=48 Identities=8% Similarity=0.079 Sum_probs=32.9 Q ss_pred HHHHHHHHHCCCC-EEEECCCCCC-----------CCCCCC---C-------CCCCCCCCHHHCCCCCCE Q ss_conf 3344664201342-0553277532-----------221121---2-------343300584560368622 Q gi|254780300|r 173 ARSDIMLLNTMGA-RIRVIAPITL-----------LPKDIS---N-------MGVEVFHDMQKGLKNVDV 220 (316) Q Consensus 173 ~~S~~~~~~~~g~-~v~~~~P~~~-----------~~~~~~---~-------~~~~~~~d~~ea~~~aDv 220 (316) .|+...+++.||+ ++.++.|..- |++... + ..+++++++++|+++.+. T Consensus 31 ihdIARamkn~Gl~~l~lV~P~~~q~~l~~~~~~~W~~~~a~~~a~~a~dvL~~akV~~sLeeAl~d~~~ 100 (192) T 3dcm_X 31 VHDIARTARTYNLKGYYIVTNLRAQQDMVSKMLKFWREGFGSRYNPSRAESLKLVKLKSYLEDVLEDIES 100 (192) T ss_dssp HHHHHHHHHHTTCSEEEEECCCHHHHHHHHHHHHHHHTSGGGGTCSSSHHHHTTEEEESSHHHHHHHHHH T ss_pred HHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHHCEEECCHHHHHHHHHH T ss_conf 7999999986799727996762677888988875077704555088989998218786889999987887 No 79 >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} Probab=79.27 E-value=2 Score=21.50 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=10.0 Q ss_pred HHHHCCCCEEEECCCCC Q ss_conf 64201342055327753 Q gi|254780300|r 178 MLLNTMGARIRVIAPIT 194 (316) Q Consensus 178 ~~~~~~g~~v~~~~P~~ 194 (316) .++..+|.++....+++ T Consensus 119 ~l~~~lG~~~~~~~~~~ 135 (232) T 3dfu_A 119 LLVGELGGSIVEIADDK 135 (232) T ss_dssp HHHHHTTCEECCCCGGG T ss_pred HHHHHHCCEEEECCHHH T ss_conf 99999399799708888 No 80 >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P)binding protein, rossmann fold; HET: NAP; 2.15A {Streptococcus pyogenes m1 gas} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Probab=79.26 E-value=0.94 Score=23.57 Aligned_cols=16 Identities=0% Similarity=0.229 Sum_probs=7.6 Q ss_pred CCCEEEECCCCCHHHHH Q ss_conf 67146520321005542 Q gi|254780300|r 103 PNIIVIRHPYSGAVNSL 119 (316) Q Consensus 103 ~d~iv~R~~~~~~~~~~ 119 (316) +|++++-.. ...+.+. T Consensus 61 ~Dvi~Lavk-P~~~~~v 76 (259) T 2ahr_A 61 VDLVILGIK-PQLFETV 76 (259) T ss_dssp CSEEEECSC-GGGHHHH T ss_pred CCCEEECCC-CHHHHHH T ss_conf 763562699-7157877 No 81 >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Probab=78.93 E-value=0.65 Score=24.64 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=45.9 Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCHHHHHHCC-------C-CCCCCCCCCCCCCCCHH--HHHHHHHHHHCC-C--CCC- Q ss_conf 22479998741367146520321005542001-------2-34211112345663122--332222222012-2--210- Q gi|254780300|r 91 IADTIATLNALRPNIIVIRHPYSGAVNSLMHK-------I-KGPSIINAGDGTHEHPS--QALLDAFAIRHF-K--GKI- 156 (316) Q Consensus 91 ~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~-------~-s~ppVINag~~~~~HP~--Q~LaDl~Ti~e~-~--g~l- 156 (316) +.++..-+..- +|+|++=.+....+.+.... . ..-.||+..+ .+|. +.+++.++=+.. + ..+ T Consensus 46 ~~~s~~e~~~~-~d~v~~~l~~~~~~~~v~~~~~~~~~~~~~g~~ivd~sT---~~p~~~~~~~~~~~~~g~~~ldapv~ 121 (296) T 2gf2_A 46 VVSSPADVAEK-ADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSST---IDPAVSKELAKEVEKMGAVFMDAPVS 121 (296) T ss_dssp ECSSHHHHHHH-CSEEEECCSSHHHHHHHHHSTTSGGGTCCTTCEEEECSC---CCHHHHHHHHHHHHHTTCEEEECCEE T ss_pred ECCCHHHHHHC-CCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCEEEECCC---CCHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 72999999857-996688348846774210354331146999999998998---99999999999999839989963863 Q ss_pred -------CCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf -------00100103554433013344664201342055327753 Q gi|254780300|r 157 -------SNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 157 -------~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) .|--..++|.- ..+.......+..+|-++..++|.+ T Consensus 122 g~~~~a~~g~l~~~~gG~--~~~~~~~~~~l~~~~~~~~~~G~~G 164 (296) T 2gf2_A 122 GGVGAARSGNLTFMVGGV--EDEFAAAQELLGCMGSNVVYCGAVG 164 (296) T ss_dssp SHHHHHHHTCEEEEEESC--GGGHHHHHHHHTTTEEEEEEEESTT T ss_pred CCHHHHHCCCEEEEEECC--HHHHHHHHHHHHHHCCCEEEECCCC T ss_conf 788898539539997176--6269999999998479769979987 No 82 >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, PSI, protein structure initiative; 2.40A {Salmonella typhimurium LT2} Probab=78.31 E-value=1.8 Score=21.77 Aligned_cols=84 Identities=19% Similarity=0.340 Sum_probs=43.0 Q ss_pred CCCEEEECCCCCHHHHHH-------CCC-CCCCCCCCCCCCCCCHHH--HHHHHHHHHCCCC-C-CC------------- Q ss_conf 671465203210055420-------012-342111123456631223--3222222201222-1-00------------- Q gi|254780300|r 103 PNIIVIRHPYSGAVNSLM-------HKI-KGPSIINAGDGTHEHPSQ--ALLDAFAIRHFKG-K-IS------------- 157 (316) Q Consensus 103 ~d~iv~R~~~~~~~~~~a-------~~~-s~ppVINag~~~~~HP~Q--~LaDl~Ti~e~~g-~-l~------------- 157 (316) +|++++-.+....+.+.. ... ..-.||+.. . .+|.+ .++..+ +.+| . ++ T Consensus 59 ~d~vi~~v~~~~~~~~v~~~~~~~~~~~~~g~iiId~s--T-~~p~~~~~~~~~~---~~~g~~~ldaPVsGg~~~A~~g 132 (295) T 1yb4_A 59 ADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMS--S-ISPIETKRFAQRV---NEMGADYLDAPVSGGEIGAREG 132 (295) T ss_dssp CSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECS--C-CCHHHHHHHHHHH---HTTTEEEEECCEESHHHHHHHT T ss_pred CCCEEECCCCCHHHHHHHCCCHHHHHHCCCCCEEEECC--C-CCHHHHHHHHHHH---HHCCCEEEECCCCCCHHHHHHC T ss_conf 88502216883234342046144554337998899647--8-9866999999999---9729969978987888999749 Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 01001035544330133446642013420553277532 Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316) Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316) .+.+..-|| ..+.......+..++-++..++|.+- T Consensus 133 ~L~~~~gG~---~~~~~~~~~il~~~~~~~~~~G~~G~ 167 (295) T 1yb4_A 133 TLSIMVGGE---QKVFDRVKPLFDILGKNITLVGGNGD 167 (295) T ss_dssp CEEEEEESC---HHHHHHHHHHHHHHEEEEEEEESTTH T ss_pred CEEEEEECC---HHHHHHHHHHHHHHCCCEEEECCCCH T ss_conf 879999479---99999999999986598899889677 No 83 >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain, oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Probab=78.24 E-value=1.7 Score=21.96 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=32.6 Q ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCC-CCCCCCCCCC----CCCCCCCCHHHHHHHHCCCCEEEECCCCCHH Q ss_conf 2128976999960787337899997987613521-1123333210----1333422479998741367146520321005 Q gi|254780300|r 42 TRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHV-ININTKNSAM----KKGENIADTIATLNALRPNIIVIRHPYSGAV 116 (316) Q Consensus 42 ~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~-i~l~~~~s~~----~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~ 116 (316) +.|++|+++.+=+-+--|- -..-...-|-++ +-+.+.+.++ ..|-.+.+..... .. +|++++=.|+.... T Consensus 12 ~~l~~k~iaviGyGsQG~a---~AlNlrDsG~~V~vglr~~s~s~~~A~~~Gf~v~~~~ea~-~~-adiv~~L~pD~~q~ 86 (338) T 1np3_A 12 SIIQGKKVAIIGYGSQGHA---HACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAV-AA-ADVVMILTPDEFQG 86 (338) T ss_dssp HHHHTSCEEEECCSHHHHH---HHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHH-HT-CSEEEECSCHHHHH T ss_pred HHHCCCEEEEEEECHHHHH---HHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEECCHHHHH-HH-CCEEEEECCHHHHH T ss_conf 8878998999766727699---8866685499779997999630999998798431599998-64-88776508877779 Q ss_pred H Q ss_conf 5 Q gi|254780300|r 117 N 117 (316) Q Consensus 117 ~ 117 (316) . T Consensus 87 ~ 87 (338) T 1np3_A 87 R 87 (338) T ss_dssp H T ss_pred H T ss_conf 9 No 84 >3dzb_A Prephenate dehydrogenase; domain SWAP, PSI2, NYSGXRC, tyrosine biosynthesis, EC:1.3.12.-, structural genomics; 2.46A {Streptococcus thermophilus lmg 18311} Probab=77.40 E-value=1.3 Score=22.67 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=44.2 Q ss_pred CCCEEEECCCCCHH---HHHHCC-CC-CCCCCCCCCCCCCCHHHHHHHHHHHH-------------CCCC-------CCC Q ss_conf 67146520321005---542001-23-42111123456631223322222220-------------1222-------100 Q gi|254780300|r 103 PNIIVIRHPYSGAV---NSLMHK-IK-GPSIINAGDGTHEHPSQALLDAFAIR-------------HFKG-------KIS 157 (316) Q Consensus 103 ~d~iv~R~~~~~~~---~~~a~~-~s-~ppVINag~~~~~HP~Q~LaDl~Ti~-------------e~~g-------~l~ 157 (316) +|+|++=++-.... .+++.. .+ ..-|+-.+ +....+++++-....=. |..| -++ T Consensus 66 ~DlVIla~P~~~~~~vl~~l~~~~~~~~~ivtDv~-SvK~~~~~~~~~~~~~~~~~fV~~HPmaG~e~~G~~~a~~~lf~ 144 (317) T 3dzb_A 66 ADVIILAVPIKQTMAYLKELADLDLKDNVIITDAG-STKREIVEAAERYLTGKNVQFVGSHPMAGSHKSGAIAADVTLFE 144 (317) T ss_dssp CSEEECCSCHHHHHHHHHHHTTSCCCTTCEEECCC-SCCHHHHHHHHHHHTTSSCEECEEEECBCC------CCCTTTTT T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHCCCEEEEEEC-CCCCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCHHHHHCCCCC T ss_conf 89899916812667889998755504675998605-65623899999865668851103665546455677676155445 Q ss_pred CCCEEECCCCCCC-CHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 0100103554433-0133446642013420553277532 Q gi|254780300|r 158 NLHIAICGDILHS-RVARSDIMLLNTMGARIRVIAPITL 195 (316) Q Consensus 158 ~l~ia~vGD~~~~-~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316) |..+..+++...+ ....-.......+|+.+....|++. T Consensus 145 ~~~~i~~p~~~~~~~~~~~v~~~~~~~G~~~~~~~~~eH 183 (317) T 3dzb_A 145 NAYYIFTPTSLTKETTIPELKDILSGLKSRYVEIDAAEH 183 (317) T ss_dssp TSEEEEECCTTCCTTHHHHHHHHGGGGCCEEEECCHHHH T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCHHH T ss_conf 843773378630588999999999980997997480345 No 85 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Probab=77.25 E-value=3.6 Score=19.83 Aligned_cols=92 Identities=12% Similarity=0.126 Sum_probs=55.3 Q ss_pred CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHH Q ss_conf 00010010355443301334466420134205532775322211212343300584560368622100011331233344 Q gi|254780300|r 156 ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSL 235 (316) Q Consensus 156 l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~ 235 (316) +.+.++..+| .++........+..+|+.+....|..-.+..... ......++++.+..+|+|+..-=.. T Consensus 153 l~~~~~Gi~g---~g~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~sDivv~~lplt------- 221 (330) T 2gcg_A 153 LTQSTVGIIG---LGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAE-FQAEFVSTPELAAQSDFIVVACSLT------- 221 (330) T ss_dssp CTTCEEEEEC---CSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHT-TTCEECCHHHHHHHCSEEEECCCCC------- T ss_pred EEEEEEEEEE---CCCHHHHHHHHCCCCCCEEEEEECCCCCHHHHHH-HHCCCCCHHHHHCCCCEEEECCCCC------- T ss_conf 1210599980---1301134553202346403554114684455443-2000020466613577899714688------- Q ss_pred HHHHHHHCCCCCCCHHHHHHCCCCCEEEC Q ss_conf 44555420235758899983799859955 Q gi|254780300|r 236 IPSIREYKHVYSLDEKKLKYAKKDALVMH 264 (316) Q Consensus 236 ~~~~~~~~~~~~v~~~~l~~a~~~ai~mH 264 (316) .+.. .-++.+.++.+|++++|-- T Consensus 222 ----~~T~--~li~~~~l~~mk~ga~lIN 244 (330) T 2gcg_A 222 ----PATE--GLCNKDFFQKMKETAVFIN 244 (330) T ss_dssp ----TTTT--TCBSHHHHHHSCTTCEEEE T ss_pred ----CCHH--HHHHHHHHHHCCCCCEEEE T ss_conf ----6526--6740999985689966999 No 86 >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Probab=76.71 E-value=2.3 Score=21.10 Aligned_cols=10 Identities=30% Similarity=0.544 Sum_probs=3.9 Q ss_pred CHHHHHHHHH Q ss_conf 1223322222 Q gi|254780300|r 138 HPSQALLDAF 147 (316) Q Consensus 138 HP~Q~LaDl~ 147 (316) -|-|.-.|++ T Consensus 87 k~g~~R~dll 96 (316) T 1ldn_A 87 KPGETRLDLV 96 (316) T ss_dssp CTTTCSGGGH T ss_pred CCCCCHHHHH T ss_conf 9898868998 No 87 >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* Probab=75.85 E-value=3.9 Score=19.59 Aligned_cols=191 Identities=15% Similarity=0.138 Sum_probs=99.3 Q ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHCCCCCC--CCCCCCC Q ss_conf 417822389999999999999999644204877521289769999607873378999-9798761352111--2333321 Q gi|254780300|r 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSF-EVAGKLLGVHVIN--INTKNSA 84 (316) Q Consensus 8 ~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SF-e~A~~~LGg~~i~--l~~~~s~ 84 (316) .+|+-+.+..+=.+.|-+...+++++.. +.. ++-.+.++=..|+.++.+.- ..++.++|..+.. |+.+.++ T Consensus 5 ~ildGk~iA~~i~~~ik~~v~~l~~~~~--g~~----P~LavIlvg~d~aS~~Yv~~K~k~~~~~GI~~~~~~l~~~~~e 78 (301) T 1a4i_A 5 EILNGKEISAQIRARLKNQVTQLKEQVP--GFT----PRLAILQVGNRDDSNLYINVKLKAAEEIGIKATHIKLPRTTTE 78 (301) T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHHHST--TCC----CEEEEEEESCCHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCH T ss_pred EEEEHHHHHHHHHHHHHHHHHHHHHHCC--CCC----CEEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH T ss_conf 7604599999999999999999998558--999----6389999699765799999999999985995999977764339 Q ss_pred CCCCCCCCCHHHHHHHHC-CCCEEEECCC--CCH-----HHHHHCCCCCC---CCCCC-----CC-CCCCCHHHHHHHHH Q ss_conf 013334224799987413-6714652032--100-----55420012342---11112-----34-56631223322222 Q gi|254780300|r 85 MKKGENIADTIATLNALR-PNIIVIRHPY--SGA-----VNSLMHKIKGP---SIINA-----GD-GTHEHPSQALLDAF 147 (316) Q Consensus 85 ~~kgEs~~Dta~vls~~~-~d~iv~R~~~--~~~-----~~~~a~~~s~p---pVINa-----g~-~~~~HP~Q~LaDl~ 147 (316) |.+.+.+.-++.-- ++.|++-.+. +.. +.........+ .-.|. |+ .+.--||-++|=+- T Consensus 79 ----~el~~~I~~lN~d~~v~GIiVqlPlP~~~~~d~~~i~~~I~p~KDVDGl~~~N~g~l~~g~~~~~~~PcTp~av~~ 154 (301) T 1a4i_A 79 ----SEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAPEKDVDGLTSINAGRLARGDLNDCFIPCTPKGCLE 154 (301) T ss_dssp ----HHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCGGGBTTCCSHHHHHHHHTTCCSSCCCCHHHHHHHH T ss_pred ----HHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHH T ss_conf ----9999999987157752204664148887885989998557966675655630466876088777756656699999 Q ss_pred HHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 22012221000100103554433013344664201342055327753222112123433005845603686221000 Q gi|254780300|r 148 AIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 148 Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) -+.+..-+++|.+++.+|.. .-|.+-+..++..-|+.|++|.-. +.++.+..++||+++.. T Consensus 155 lL~~y~i~l~GK~vvViGrS--~iVG~Pla~ll~~~~atVt~~hs~--------------t~~l~~~~~~ADIvisa 215 (301) T 1a4i_A 155 LIKETGVPIAGRHAVVVGRS--KIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVA 215 (301) T ss_dssp HHHTTTCCCTTCEEEEECCC--TTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEEC T ss_pred HHHHHCCCCCCCEEEEEEEC--CCCCHHHHHHHHCCCCEEEEEECC--------------CCHHHHHCCCCCEEEEC T ss_conf 99985988247457997304--544478999975279769998589--------------85004304457788613 No 88 >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* Probab=75.48 E-value=2.8 Score=20.53 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=7.0 Q ss_pred EEECCCCHHHHHHHH Q ss_conf 960787337899997 Q gi|254780300|r 52 LFLETSTRTQTSFEV 66 (316) Q Consensus 52 lF~kpStRTR~SFe~ 66 (316) ++.-||..+|--++. T Consensus 90 i~avps~~~~~~l~~ 104 (366) T 1evy_A 90 LFVIPTQFLRGFFEK 104 (366) T ss_dssp EECCCHHHHHHHHHH T ss_pred HHCCCHHHHHHHHHH T ss_conf 023769999999998 No 89 >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} Probab=73.78 E-value=4.4 Score=19.26 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=12.6 Q ss_pred CHHHCCHHHHHHHHHHHHHHH Q ss_conf 822389999999999999999 Q gi|254780300|r 11 TVKDLSMQDVNYLLDRANEYF 31 (316) Q Consensus 11 ~~~dl~~~el~~ll~~A~~~k 31 (316) .+-|.+++.++...+...+.. T Consensus 32 ~l~D~~~~~l~~~~~~i~~~l 52 (483) T 3mog_A 32 LLYDISAEALTRAIDGIHARL 52 (483) T ss_dssp EEECSCHHHHHHHHHHHHHHH T ss_pred EEEECCHHHHHHHHHHHHHHH T ss_conf 999799999999999999999 No 90 >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Probab=73.76 E-value=1.8 Score=21.79 Aligned_cols=21 Identities=10% Similarity=0.338 Sum_probs=11.0 Q ss_pred CCHHHHHHHHCCCCEEEECCCCC Q ss_conf 24799987413671465203210 Q gi|254780300|r 92 ADTIATLNALRPNIIVIRHPYSG 114 (316) Q Consensus 92 ~Dta~vls~~~~d~iv~R~~~~~ 114 (316) .|-...+.. +|++++-.+... T Consensus 74 ~d~~eal~~--aDvVivavka~~ 94 (404) T 3c7a_A 74 KDPEIAISG--ADVVILTVPAFA 94 (404) T ss_dssp SCHHHHHTT--CSEEEECSCGGG T ss_pred CCHHHHHCC--CCEEEEECCHHH T ss_conf 799999626--967998066899 No 91 >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Probab=72.87 E-value=3.9 Score=19.56 Aligned_cols=137 Identities=12% Similarity=0.171 Sum_probs=65.7 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHC---CCCCC---CCCCCCEEEEEEECCCCHHHH--HHHHHHHHHC------CCC Q ss_conf 782238999999999999999964420---48775---212897699996078733789--9997987613------521 Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKSH---FNPST---TRLQGLTQINLFLETSTRTQT--SFEVAGKLLG------VHV 75 (316) Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~~---~~~~~---~~L~gk~~~~lF~kpStRTR~--SFe~A~~~LG------g~~ 75 (316) |.+-|.+.+-++..-..+..+.+.... ....+ ..|.|...+..=......... -++. -.+.| |.. T Consensus 35 i~L~Did~~rl~~~~~~~~~~~~~~~~~~~i~~ttd~~~al~~adfVi~t~~vgg~~~~~~~~~i-~ek~gl~~~~~gqe 113 (480) T 1obb_A 35 VTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQI-GEKYGYYRGIDAQE 113 (480) T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTTHHHHHHHHHHH-HHHTTCTTCTTCBT T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCEEEEEEECCCCCCCHHHHHH-HHHCCHHCCCCCCC T ss_conf 99986987799999999999998729982899968899984799999983432886410355643-33306102768752 Q ss_pred CCC-CCCCC--CCCCCCCCCCHHHHHHHHCCCCEEEECCCCC-HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 112-33332--1013334224799987413671465203210-05542001234211112345663122332222222 Q gi|254780300|r 76 INI-NTKNS--AMKKGENIADTIATLNALRPNIIVIRHPYSG-AVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAI 149 (316) Q Consensus 76 i~l-~~~~s--~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~-~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti 149 (316) ... ++... .+..--.+.|.++-+..+.+|++++-....- .+..+....+..++|+.|++.. . ++-++..+=+ T Consensus 114 ~~~~G~gg~~~alrtipv~~~i~~~i~~~~P~A~iin~tNP~~ivt~a~~~~~~~~~iGlC~~p~-~-~~~la~~Lgv 189 (480) T 1obb_A 114 FNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVPIKAVGFCHGHY-G-VMEIVEKLGL 189 (480) T ss_dssp TBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHHHHHSCSEEEEECSGGG-H-HHHHHHHTTC T ss_pred CCCCCCCHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHCCCCEEEEECCCCH-H-HHHHHHHHCC T ss_conf 57877326663133589999999999986998499995681699999986436652898579831-5-8999999499 No 92 >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, cytoplasm, oxidoreductase, phospholipid biosynthesis, structural genomics; HET: EPE; 2.10A {Coxiella burnetii rsa 493} Probab=72.32 E-value=4.1 Score=19.43 Aligned_cols=111 Identities=16% Similarity=0.126 Sum_probs=44.4 Q ss_pred HHHHHHCCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH---HCCCC-CCCCCCCCCCCCCCH Q ss_conf 79876135211123333--2101333422479998741367146520321005542---00123-421111234566312 Q gi|254780300|r 66 VAGKLLGVHVININTKN--SAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSL---MHKIK-GPSIINAGDGTHEHP 139 (316) Q Consensus 66 ~A~~~LGg~~i~l~~~~--s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~---a~~~s-~ppVINag~~~~~HP 139 (316) -.++.-|-+..+|..-. ..+. ...|....+.. +|+|++-.+.......+ ..... ..++|.+.-|. +++ T Consensus 66 ~~I~~~~~n~~ylp~i~l~~~I~---at~dl~e~l~~--ad~Iiiavps~~~~~~l~~i~~~~~~~~~ii~~~kG~-~~~ 139 (356) T 3k96_A 66 DEMQAEGVNNRYLPNYPFPETLK---AYCDLKASLEG--VTDILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGL-AKG 139 (356) T ss_dssp HHHHHHSSBTTTBTTCCCCTTEE---EESCHHHHHTT--CCEEEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSC-BTT T ss_pred HHHHHCCCCCCCCCCCCCCCCEE---EECCHHHHHHC--CCEEEEECCCHHHHHHHHHHHHHCCCCCCHHHCCCCC-CCC T ss_conf 99997398977799895998758---97678999617--8638995561999999997323135553011101234-677 Q ss_pred HHHHHHHHHHHCCCCCCCCCC-EEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 233222222201222100010-0103554433013344664201342055327753 Q gi|254780300|r 140 SQALLDAFAIRHFKGKISNLH-IAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 140 ~Q~LaDl~Ti~e~~g~l~~l~-ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) +..+.+++ .+..+. .. .++.|.. .+. +.+...+..++++++.. T Consensus 140 ~~~~~~~~--~~~~~~---~~~~vlsGPs----~A~---Ev~~~~~t~~~ias~~~ 183 (356) T 3k96_A 140 SRLLHEVV--ATELGQ---VPMAVISGPS----LAT---EVAANLPTAVSLASNNS 183 (356) T ss_dssp TBCHHHHH--HHHHCS---CCEEEEESSC----CHH---HHHTTCCEEEEEEESCH T ss_pred CCCCCHHH--HHHCCC---CCEEEEECCC----HHH---HHHCCCCCEEEEECCHH T ss_conf 76510146--565799---8548983574----055---55417981589715348 No 93 >1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics, hydrolase; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Probab=72.31 E-value=2.2 Score=21.25 Aligned_cols=135 Identities=11% Similarity=0.126 Sum_probs=68.5 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCC---CCC---CCCCCCEEEEE-EECCCCHHHHHHHHHH-------HHHCCCC Q ss_conf 78223899999999999999996442048---775---21289769999-6078733789999798-------7613521 Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKSHFN---PST---TRLQGLTQINL-FLETSTRTQTSFEVAG-------KLLGVHV 75 (316) Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~~~~---~~~---~~L~gk~~~~l-F~kpStRTR~SFe~A~-------~~LGg~~ 75 (316) |.+-|.+.+-++.+-.+|..+.+.....- ..+ ..|.|...+.. +.....|-+..-..+. .+.|.. T Consensus 46 l~L~Did~~rL~~~~~l~~~~~~~~~~~~~v~~Ttdr~eAl~gADfVi~~i~~~~~Rvg~~~~r~~ded~~Ip~K~gl~- 124 (483) T 1vjt_A 46 IYMMDVHERRLNASYILARKYVEELNSPVKIVKTSSLDEAIDGADFIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYY- 124 (483) T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCT- T ss_pred EEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCHHHCCC- T ss_conf 9996899899999999999999961989089997899999769999998031055654676643333123243121500- Q ss_pred CCCCCC-C---CCCCCC-CC------CCCHHHHHHHHCCCCEEEECCCCC-HHHHHHCCCCCCCCCCCCCCCCCCHHHHH Q ss_conf 112333-3---210133-34------224799987413671465203210-05542001234211112345663122332 Q gi|254780300|r 76 ININTK-N---SAMKKG-EN------IADTIATLNALRPNIIVIRHPYSG-AVNSLMHKIKGPSIINAGDGTHEHPSQAL 143 (316) Q Consensus 76 i~l~~~-~---s~~~kg-Es------~~Dta~vls~~~~d~iv~R~~~~~-~~~~~a~~~s~ppVINag~~~~~HP~Q~L 143 (316) ..+..+ + ..+.+. -+ +-|.++.+..+.+|++++=..... .+.+....++...+|+.|++.. . ++-+ T Consensus 125 ~gv~gQet~G~GG~~~alRtip~ipv~leia~di~e~~P~AwliNyTNP~~ivt~Av~~~~~~k~vGLC~~~~-~-~~~~ 202 (483) T 1vjt_A 125 RGIDSQELNMVSTYTYVLSSYPDMKLALEIAEKMKKMAPKAYLMQTANPVFEITQAVRRWTGANIVGFCHGVA-G-VYEV 202 (483) T ss_dssp TCTTCBTTBCCTTSCSTTTCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHHHHHSCCCEEECCCGGG-G-HHHH T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCHH-H-HHHH T ss_conf 2545652678765513102563029999999999976998089980788899999998526998899689727-7-9999 Q ss_pred HHHH Q ss_conf 2222 Q gi|254780300|r 144 LDAF 147 (316) Q Consensus 144 aDl~ 147 (316) +..+ T Consensus 203 ~~~l 206 (483) T 1vjt_A 203 FEKL 206 (483) T ss_dssp HHHT T ss_pred HHHC T ss_conf 9981 No 94 >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Probab=71.68 E-value=3 Score=20.29 Aligned_cols=58 Identities=19% Similarity=0.232 Sum_probs=35.5 Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCEEEEEEE Q ss_conf 5443301334466420134205532775322211212343300584560368622100011 Q gi|254780300|r 166 DILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRM 226 (316) Q Consensus 166 D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~ 226 (316) |+++| .+..++..+...|+++.+.-|-- .+..........++++++.+++|+|..... T Consensus 325 d~R~S-ps~~li~~L~~~g~~V~~~DP~v--~~~~~~~~~~~~~~~~~~~~~~d~iv~~~~ 382 (402) T 1dlj_A 325 NFRES-AIKDVIDILKSKDIKIIIYEPML--NKLESEDQSVLVNDLENFKKQANIIVTNRY 382 (402) T ss_dssp CCTTC-HHHHHHHHHHTSSCEEEEECTTC--SCCCTTCCSEECCCHHHHHHHCSEEECSSC T ss_pred CEECC-CHHHHHHHHHHCCCEEEEECCCC--CHHHHCCCCEEECCHHHHHHCCCEEEECCC T ss_conf 72368-29999999997899899999989--803522673781789999708959998687 No 95 >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Probab=70.99 E-value=2.2 Score=21.14 Aligned_cols=98 Identities=14% Similarity=0.106 Sum_probs=45.6 Q ss_pred CCHHHHHHHHCCCCEEEECCCCCHHHHHHC-------C-CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---------C Q ss_conf 247999874136714652032100554200-------1-2342111123456631223322222220122---------2 Q gi|254780300|r 92 ADTIATLNALRPNIIVIRHPYSGAVNSLMH-------K-IKGPSIINAGDGTHEHPSQALLDAFAIRHFK---------G 154 (316) Q Consensus 92 ~Dta~vls~~~~d~iv~R~~~~~~~~~~a~-------~-~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~---------g 154 (316) .++..-+..- +|++++--+....+.+... . ...-.+|+.. . ..|.++..=.-.+.++. | T Consensus 68 ~~s~~e~~~~-~d~vi~~l~~~~a~~~v~~~~~~~~~~~~~g~iiid~s--T-~~p~~~~~~~~~~~~~g~~~ldaPVsG 143 (310) T 3doj_A 68 CESPAEVIKK-CKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMS--T-VDAETSLKINEAITGKGGRFVEGPVSG 143 (310) T ss_dssp CSSHHHHHHH-CSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECS--C-CCHHHHHHHHHHHHHTTCEEEECCEEC T ss_pred CCCHHHHHHC-CCCEEEECCCCCCEEEEECCCHHHHHHCCCCCEEEECC--C-CCHHHHHHHHHHHHHCCCEEEEEECCC T ss_conf 2899999845-88449840575302563013201554235898899568--7-637778999999984497699633778 Q ss_pred C----CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 1----0001001035544330133446642013420553277532 Q gi|254780300|r 155 K----ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316) Q Consensus 155 ~----l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316) . .+|.-..++|. .-.+.......+..++-++..++|.+- T Consensus 144 g~~~A~~G~l~~~vgG--~~~~~~~~~~il~~~~~~i~~~G~~G~ 186 (310) T 3doj_A 144 SKKPAEDGQLIILAAG--DKALFEESIPAFDVLGKRSFYLGQVGN 186 (310) T ss_dssp CHHHHHHTCEEEEEEE--CHHHHHHHHHHHHHHEEEEEECSSTTH T ss_pred CHHHHHCCCCEEECCC--CHHHHHHHHHHHHHHCCCEEEECCCCH T ss_conf 8688856982200479--879999870587851697799799748 No 96 >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Probab=70.30 E-value=5.2 Score=18.75 Aligned_cols=170 Identities=12% Similarity=0.135 Sum_probs=95.0 Q ss_pred EEEECCC--CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCC--- Q ss_conf 9960787--33789999798761352111233332101333422479998741367146520321005542001234--- Q gi|254780300|r 51 NLFLETS--TRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKG--- 125 (316) Q Consensus 51 ~lF~kpS--tRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~--- 125 (316) -++=.|= .++-.=+..+..++|....|.--+- ..|.+++....+.......+.+--|+...+..+....+. T Consensus 16 gviG~pI~hS~SP~ihn~~f~~~gl~~~Y~~~~v----~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~l~~~A~ 91 (275) T 2hk9_A 16 GVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEI----NPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLDYVEDTAK 91 (275) T ss_dssp EEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEEC----CGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCSEECHHHH T ss_pred EEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC----CHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHCCCCHHHH T ss_conf 9989976303179999999998699928999877----889999999987507988699757061768654155406667 Q ss_pred -----CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC-CC Q ss_conf -----211112345663122332222222012221000100103554433013344664201342055327753222-11 Q gi|254780300|r 126 -----PSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLP-KD 199 (316) Q Consensus 126 -----ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~-~~ 199 (316) --|++-......+-|-...=+..+++...++++.++..+|- +-++++.+.++...|.++.++.-..-.. .. T Consensus 92 ~iGAvNTi~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~~vlilGa---GGaarai~~aL~~~g~~i~~~~r~~~~~~~~ 168 (275) T 2hk9_A 92 EIGAVNTVKFENGKAYGYNTDWIGFLKSLKSLIPEVKEKSILVLGA---GGASRAVIYALVKEGAKVFLWNRTKEKAIKL 168 (275) T ss_dssp HHTCCCEEEEETTEEEEECCHHHHHHHHHHHHCTTGGGSEEEEECC---SHHHHHHHHHHHHHTCEEEEECSSHHHHHHH T ss_pred HHCCCCEEEECCCCEEEECCCHHHHHHHHHHCCCCCCCCEEEEECC---HHHHHHHHHHHHHCCCEEEEECCCHHHHHHH T ss_conf 6254003894399164245754644302220276767774788455---0778999999997599798533758999999 Q ss_pred CCCCCCCCCCCHHHCCCCCCEEE-EEEEC Q ss_conf 21234330058456036862210-00113 Q gi|254780300|r 200 ISNMGVEVFHDMQKGLKNVDVIM-ILRMQ 227 (316) Q Consensus 200 ~~~~~~~~~~d~~ea~~~aDvv~-~~~~~ 227 (316) .............+...++|+|+ +++.+ T Consensus 169 ~~~~~~~~~~~~~~~~~~~dliINaTp~G 197 (275) T 2hk9_A 169 AQKFPLEVVNSPEEVIDKVQVIVNTTSVG 197 (275) T ss_dssp TTTSCEEECSCGGGTGGGCSEEEECSSTT T ss_pred HHHCCCCHHHHHHHHCCCCCEEEECCCCC T ss_conf 98668411123443114112664035677 No 97 >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Probab=68.95 E-value=1.7 Score=21.93 Aligned_cols=15 Identities=7% Similarity=-0.006 Sum_probs=6.9 Q ss_pred CCCEEEECCCCCHHH Q ss_conf 671465203210055 Q gi|254780300|r 103 PNIIVIRHPYSGAVN 117 (316) Q Consensus 103 ~d~iv~R~~~~~~~~ 117 (316) +|+++.-.+....+. T Consensus 57 advii~~v~~~~a~~ 71 (264) T 1i36_A 57 CPVVISAVTPGVALG 71 (264) T ss_dssp SSEEEECSCGGGHHH T ss_pred CCCEEEEECCCHHHH T ss_conf 580799833631588 No 98 >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Probab=67.90 E-value=2.7 Score=20.61 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=18.6 Q ss_pred CCCEEEECCCCCHHHHHHC-------C-CCCCCCCCCCCCCCCCHHHHHH Q ss_conf 6714652032100554200-------1-2342111123456631223322 Q gi|254780300|r 103 PNIIVIRHPYSGAVNSLMH-------K-IKGPSIINAGDGTHEHPSQALL 144 (316) Q Consensus 103 ~d~iv~R~~~~~~~~~~a~-------~-~s~ppVINag~~~~~HP~Q~La 144 (316) +|++++-.++...+.+... . .....||+. +. ..|.++.. T Consensus 65 ~diii~~v~~~~~~~~v~~~~~~~~~~~~~g~iiid~--sT-~~p~~~~~ 111 (303) T 3g0o_A 65 VDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVS--ST-ISSADAQE 111 (303) T ss_dssp CSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEEC--SC-CCHHHHHH T ss_pred CCEEEEEEECCHHHCCCCCCCCCCCCCCCCCCEEEEC--CC-CCHHHHHH T ss_conf 8946888622022200024543310014676323305--77-88788899 No 99 >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} Probab=66.39 E-value=1.7 Score=21.96 Aligned_cols=68 Identities=16% Similarity=0.139 Sum_probs=45.4 Q ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCC-CC--CCCCCCCCCHHHCCCCCCEEEEEE Q ss_conf 100010010355443301334466420134205532775322211-21--234330058456036862210001 Q gi|254780300|r 155 KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKD-IS--NMGVEVFHDMQKGLKNVDVIMILR 225 (316) Q Consensus 155 ~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~-~~--~~~~~~~~d~~ea~~~aDvv~~~~ 225 (316) ...+.+++.+|- +.++...+..+..-|.+++++....-..+. .. +.....+.++.+++.++|+|++.. T Consensus 18 ~~~~kkilvIGa---G~~~~~~a~~L~~~~~~v~v~nRt~~ka~~la~~~~~~~~~~~~l~~~l~~~DiVi~aT 88 (144) T 3oj0_A 18 KNGGNKILLVGN---GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITAT 88 (144) T ss_dssp HHCCCEEEEECC---SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECS T ss_pred HCCCCEEEEECC---HHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEEC T ss_conf 639999999997---89999999999856984689819999999998750522022420899997679899923 No 100 >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* Probab=65.34 E-value=4.9 Score=18.92 Aligned_cols=88 Identities=13% Similarity=0.196 Sum_probs=39.5 Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCC--CCHHHHHHHHHHHHCCCCCCCCCCEEE--CCCCC-C Q ss_conf 999874136714652032100554200123421111234566--312233222222201222100010010--35544-3 Q gi|254780300|r 95 IATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTH--EHPSQALLDAFAIRHFKGKISNLHIAI--CGDIL-H 169 (316) Q Consensus 95 a~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~--~HP~Q~LaDl~Ti~e~~g~l~~l~ia~--vGD~~-~ 169 (316) .+.|. - +|+++........+..+... ...++.++.... ..+.+...+.+ .+. --+|.+|++ .||.. + T Consensus 236 ~~~L~-~-advv~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l--~~~--~~~G~~Va~l~~GDP~~y 307 (457) T 1pjq_A 236 LQQIQ-Q-ADIVVYDRLVSDDIMNLVRR--DADRVFVGKRAGYHCVPQEEINQIL--LRE--AQKGKRVVRLKGGDPFIF 307 (457) T ss_dssp HHHHH-H-CSEEEECTTSCHHHHTTSCT--TSEEEECSCC---CCCTTHHHHHHH--HHH--HHTTCEEEEEESBCTTTS T ss_pred HHHHH-H-CCEEEECCCCCHHHHHHCCC--CCEEEECCCCCCCCCCHHHHHHHHH--HHH--HHCCCEEEEEECCCCCCC T ss_conf 99998-6-99999868763778865234--5437730355554420078999999--999--974985999906886441 Q ss_pred CCHHHHHHHHHHCCCCEEEECC Q ss_conf 3013344664201342055327 Q gi|254780300|r 170 SRVARSDIMLLNTMGARIRVIA 191 (316) Q Consensus 170 ~~v~~S~~~~~~~~g~~v~~~~ 191 (316) + ....++..+...|+++.++. T Consensus 308 s-~~~~~~~~~~~~~i~veVVP 328 (457) T 1pjq_A 308 G-RGGEELETLCHAGIPFSVVP 328 (457) T ss_dssp S-SHHHHHTTTTTTTCCEEEEC T ss_pred H-HHHHHHHHHHHCCEEEEECC T ss_conf 6-69999998763783699748 No 101 >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber dsm 13855} Probab=65.14 E-value=6.3 Score=18.22 Aligned_cols=20 Identities=10% Similarity=-0.071 Sum_probs=9.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 68687756999999999997 Q gi|254780300|r 286 IQYQVEMGVAVRMAIIKELL 305 (316) Q Consensus 286 v~~Qa~Nrl~~~~AlL~~~l 305 (316) -++++...+......++.+. T Consensus 289 ~l~~s~~~l~~~i~~~~~l~ 308 (314) T 3nep_X 289 QLKTSAGHVHSNLDDLQRLR 308 (314) T ss_dssp HHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999999999887 No 102 >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Probab=64.34 E-value=6.8 Score=17.99 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.6 Q ss_pred CCCEEECCCC Q ss_conf 0100103554 Q gi|254780300|r 158 NLHIAICGDI 167 (316) Q Consensus 158 ~l~ia~vGD~ 167 (316) |.....++|. T Consensus 223 gK~pVvv~d~ 232 (460) T 3k6j_A 223 KKLPVLVGNC 232 (460) T ss_dssp TCEEEEESSC T ss_pred CCEEEEECCC T ss_conf 8805883466 No 103 >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* Probab=63.47 E-value=2.6 Score=20.70 Aligned_cols=67 Identities=19% Similarity=0.369 Sum_probs=37.9 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCC-CC------CCHHH-CCCCCCEEEE Q ss_conf 21000100103554433013344664201342055327753222112123433-00------58456-0368622100 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVE-VF------HDMQK-GLKNVDVIMI 223 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~-~~------~d~~e-a~~~aDvv~~ 223 (316) |..++.++..+| .+++..+....+...|.++.++-+..-.-+.....+.. ++ ..+++ .++++|+++. T Consensus 2 ~~~~~~~~iIiG---~G~~G~~la~~L~~~g~~vvviD~d~~~~~~~~~~g~~~v~gD~td~~~L~~a~i~~a~~vii 76 (144) T 2hmt_A 2 GRIKNKQFAVIG---LGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIV 76 (144) T ss_dssp ----CCSEEEEC---CSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEE T ss_pred CCCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHCCCCCCCEEEE T ss_conf 876578399988---789999999999988991999979679999998539749993178888886302234999999 No 104 >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 Probab=63.09 E-value=3.6 Score=19.77 Aligned_cols=46 Identities=11% Similarity=-0.000 Sum_probs=20.3 Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCC Q ss_conf 987613521112333321013334224799987413671465203210 Q gi|254780300|r 67 AGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSG 114 (316) Q Consensus 67 A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~ 114 (316) +++.-|.+..+.........-.....|-...+.. .|++++-.+... T Consensus 42 ~l~~~g~~~~~~~~~~~~~~~~~~t~d~~~~~~~--aD~viv~vks~~ 87 (359) T 1bg6_A 42 EIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKD--ADVILIVVPAIH 87 (359) T ss_dssp HHHHHTSEEEESSSCCEEECCSEEESCHHHHHTT--CSEEEECSCGGG T ss_pred HHHHCCCCCCCCCCHHHHHCCCEEECCHHHHHHC--CCEEEEEECCHH T ss_conf 9995899866687445320244343899999705--988999736702 No 105 >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Probab=62.63 E-value=3 Score=20.35 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=10.9 Q ss_pred CCHHHHHHHHHHH-HCCCCCCCCCCE Q ss_conf 3122332222222-012221000100 Q gi|254780300|r 137 EHPSQALLDAFAI-RHFKGKISNLHI 161 (316) Q Consensus 137 ~HP~Q~LaDl~Ti-~e~~g~l~~l~i 161 (316) .-|+-+++-+++. ..+.+.++.-+| T Consensus 125 tNPvD~~t~~a~~~~k~~~~~p~~ri 150 (326) T 1smk_A 125 SNPVNSTVPIAAEVFKKAGTYDPKRL 150 (326) T ss_dssp CSSHHHHHHHHHHHHHHHTCCCTTSE T ss_pred CCCCHHHHHHHHHHHHHCCCCCHHHE T ss_conf 38613789999999987699983517 No 106 >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Probab=61.36 E-value=7.6 Score=17.69 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHHH-HCCCCCCCCCCE Q ss_conf 3122332222222-012221000100 Q gi|254780300|r 137 EHPSQALLDAFAI-RHFKGKISNLHI 161 (316) Q Consensus 137 ~HP~Q~LaDl~Ti-~e~~g~l~~l~i 161 (316) +.|+-+++-+.+- ..+.|.+...+| T Consensus 117 sNPvD~~~~i~~~~~k~~g~~~~~~i 142 (314) T 1mld_A 117 SNPVNSTIPITAEVFKKHGVYNPNKI 142 (314) T ss_dssp SSCHHHHHHHHHHHHHHTTCCCTTSE T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCEE T ss_conf 48630368999999987568851446 No 107 >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genomics, protein structure initiative, PSI; HET: NAD; 1.95A {Listeria innocua} Probab=61.02 E-value=4.6 Score=19.09 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=18.6 Q ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 699996078733789999798761352111233332101333422479 Q gi|254780300|r 48 TQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTI 95 (316) Q Consensus 48 ~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta 95 (316) .++.+.--|++ +.....++.+-|-|++.--|-...+...+.+.+.+ T Consensus 67 D~V~i~tp~~~--h~~~~~~al~~gkhv~~EKP~a~~~~e~~~l~~~~ 112 (359) T 3e18_A 67 DAVLIATPNDS--HKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVA 112 (359) T ss_dssp CEEEECSCGGG--HHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH T ss_pred CEEEECCCCHH--HHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHH T ss_conf 98998788055--23567888853981999578642087887889999 No 108 >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by light; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Probab=60.68 E-value=8 Score=17.57 Aligned_cols=27 Identities=11% Similarity=0.062 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf 868775699999999999778142220 Q gi|254780300|r 287 QYQVEMGVAVRMAIIKELLENQNKITQ 313 (316) Q Consensus 287 ~~Qa~Nrl~~~~AlL~~~l~~~~~~~~ 313 (316) ++++..-|-..+.....+++-+....+ T Consensus 338 l~~s~~eL~~E~~~v~~L~~e~~~~~~ 364 (375) T 7mdh_A 338 IKKSEAELLAEKKCVAHLTGEGNAYCD 364 (375) T ss_dssp HHHHHHHHHHHHHHTHHHHTSSSCCCC T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 999999999999999997634234378 No 109 >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99.5) (CM) and prephenate dehydrogenase...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 Probab=60.26 E-value=7.7 Score=17.66 Aligned_cols=126 Identities=10% Similarity=0.144 Sum_probs=61.9 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHH---HHHCCCC-CCCCCCCCC Q ss_conf 337899997987613521112333321013334224799987413671465203210055---4200123-421111234 Q gi|254780300|r 58 TRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVN---SLMHKIK-GPSIINAGD 133 (316) Q Consensus 58 tRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~---~~a~~~s-~ppVINag~ 133 (316) -+==-||..+..+-|-.+...|.+.. +.. ...+. .+|+|++-+|-..... +++...+ .--|+-.+ T Consensus 31 G~mG~sla~~l~~~G~~V~~~d~~~~------~~~--~~~~~--~aD~VilavP~~~~~~~l~~~~~~l~~~~iv~Dv~- 99 (298) T 2pv7_A 31 GKLGGLFARYLRASGYPISILDREDW------AVA--ESILA--NADVVIVSVPINLTLETIERLKPYLTENMLLADLT- 99 (298) T ss_dssp SHHHHHHHHHHHTTTCCEEEECTTCG------GGH--HHHHT--TCSEEEECSCGGGHHHHHHHHGGGCCTTSEEEECC- T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCH------HHH--HHHHC--CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEC- T ss_conf 86789999999968995999749804------328--99875--99999990969999787898755248885697404- Q ss_pred CCCCCHHHHHHHHHHHHC-----CCC----CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 566312233222222201-----222----10001001035544330133446642013420553277532 Q gi|254780300|r 134 GTHEHPSQALLDAFAIRH-----FKG----KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316) Q Consensus 134 ~~~~HP~Q~LaDl~Ti~e-----~~g----~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316) +....|++.+.......- -+| .+++-.++.+.. .......-+..++..+|+++....|++. T Consensus 100 SvK~~i~~~~~~~~~~~fi~~HPmaG~e~~g~~~~~v~~~~~-~~~~~~~~v~~l~~~~Ga~v~~~~~eeH 169 (298) T 2pv7_A 100 SVKREPLAKMLEVHTGAVLGLHPMFGADIASMAKQVVVRCDG-RFPERYEWLLEQIQIWGAKIYQTNATEH 169 (298) T ss_dssp SCCHHHHHHHHHHCSSEEEEEEECSCTTCSCCTTCEEEEEEE-ECGGGTHHHHHHHHHTTCEEEECCHHHH T ss_pred CCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHCCCCEEEECHHHH T ss_conf 412689999987456887632776565556776148995699-9748999999999982992799558889 No 110 >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Probab=60.16 E-value=3.3 Score=20.02 Aligned_cols=77 Identities=10% Similarity=0.164 Sum_probs=36.3 Q ss_pred HHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCC-CCCCC-----CCCCCC----CCCCCCHHHHHHHHCC Q ss_conf 4204877521289769999607873378999979876135211-12333-----321013----3342247999874136 Q gi|254780300|r 34 KSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKLLGVHVI-NINTK-----NSAMKK----GENIADTIATLNALRP 103 (316) Q Consensus 34 ~~~~~~~~~~L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i-~l~~~-----~s~~~k----gEs~~Dta~vls~~~~ 103 (316) ...+....+.|+||+++-+=+-.--|- ...-...-|-.++ -+.+. +.++.+ |=.+.+.+... .. + T Consensus 25 ~~~f~~~~~~lk~k~iaViGyGsQG~a---hAlNLrDSG~~V~Vglr~~s~~~~s~S~~~A~~dGf~v~~~~eA~-~~-a 99 (491) T 1yrl_A 25 RDEFADGASYLQGKKVVIVGCGAQGLN---QGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELI-PQ-A 99 (491) T ss_dssp GGGGTTTTGGGTTSCEEEECCSHHHHH---HHHHHHHTTCCEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHG-GG-C T ss_pred HHHHHCHHHHHCCCEEEEEEECCHHHH---HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHCCCEECCHHHHH-HH-C T ss_conf 765423468875997999766713499---986778659977999467876545325999997699756799998-63-7 Q ss_pred CCEEEECCCCCH Q ss_conf 714652032100 Q gi|254780300|r 104 NIIVIRHPYSGA 115 (316) Q Consensus 104 d~iv~R~~~~~~ 115 (316) |+|++-.|+... T Consensus 100 Dvv~~L~pD~~q 111 (491) T 1yrl_A 100 DLVINLTPDKQH 111 (491) T ss_dssp SEEEECSCHHHH T ss_pred CEEEECCCHHHH T ss_conf 988886984679 No 111 >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} Probab=59.91 E-value=6.5 Score=18.13 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=6.3 Q ss_pred HHHHHHHHHHHHCCCC Q ss_conf 7899997987613521 Q gi|254780300|r 60 TQTSFEVAGKLLGVHV 75 (316) Q Consensus 60 TR~SFe~A~~~LGg~~ 75 (316) ++.....++...|-|+ T Consensus 81 ~H~~~~~~al~~gk~V 96 (315) T 3c1a_A 81 THAEITLAAIASGKAV 96 (315) T ss_dssp GHHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHHHCCCH T ss_conf 8799999999613221 No 112 >2z04_A Phosphoribosylaminoimidazole carboxylase ATPase subunit; purine nucleotide biosynthetic pathway, structural genomics, NPPSFA; 2.35A {Aquifex aeolicus} Probab=59.24 E-value=4.8 Score=19.00 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=8.0 Q ss_pred HHHHHHHCCCCCCCCCC Q ss_conf 97987613521112333 Q gi|254780300|r 65 EVAGKLLGVHVININTK 81 (316) Q Consensus 65 e~A~~~LGg~~i~l~~~ 81 (316) ..|+.+||.+++.++++ T Consensus 17 ~~aAk~lGi~v~v~d~~ 33 (365) T 2z04_A 17 ILEGRKLGFKFHVLEDK 33 (365) T ss_dssp HHHHGGGTCEEEEECSS T ss_pred HHHHHHCCCEEEEEECC T ss_conf 99999789989999569 No 113 >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Probab=58.80 E-value=2.2 Score=21.15 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=11.0 Q ss_pred HHHHHHHHHCCCCEEEECCCC Q ss_conf 334466420134205532775 Q gi|254780300|r 173 ARSDIMLLNTMGARIRVIAPI 193 (316) Q Consensus 173 ~~S~~~~~~~~g~~v~~~~P~ 193 (316) ......++..+|.++..+.+. T Consensus 135 ~~~~~~ll~~~g~~v~~~~~~ 155 (276) T 2i76_A 135 LPIVKKIAEEISGKYFVIPSE 155 (276) T ss_dssp HHHHHHHHHHHCSCEEECCGG T ss_pred HHHHHHHHHHHCCCEEEECCC T ss_conf 999999999957938996710 No 114 >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} Probab=58.64 E-value=8.1 Score=17.51 Aligned_cols=24 Identities=13% Similarity=0.166 Sum_probs=11.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 868775699999999999778142 Q gi|254780300|r 287 QYQVEMGVAVRMAIIKELLENQNK 310 (316) Q Consensus 287 ~~Qa~Nrl~~~~AlL~~~l~~~~~ 310 (316) ++++-.-+-+--|+.+--+++++. T Consensus 302 ~e~~~~~~~iieai~~sw~~~~~~ 325 (330) T 3e9m_A 302 KELTIATVKIVESFYQEWFDNEGH 325 (330) T ss_dssp HHHHHHHHHHHHHHHHHHTCCC-- T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 999999999999999998868998 No 115 >3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides} Probab=58.00 E-value=8.8 Score=17.27 Aligned_cols=83 Identities=18% Similarity=0.196 Sum_probs=48.9 Q ss_pred CCCCEEEEEEECCCC----HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHH Q ss_conf 289769999607873----3789999798761352111233332101333422479998741367146520321005542 Q gi|254780300|r 44 LQGLTQINLFLETST----RTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSL 119 (316) Q Consensus 44 L~gk~~~~lF~kpSt----RTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~ 119 (316) ++||+++.+....+- +..-.++.++.++|...+.++.... .|.-.+.+..+-..++|.|++-..+....... T Consensus 3 ~~gk~Ig~i~~~~~~~f~~~~~~g~~~~a~~~G~~~~~~~~~~d----~~~q~~~i~~~i~~~vDgiIi~~~~~~~~~~~ 78 (291) T 3l49_A 3 LEGKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAGRN----DQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPW 78 (291) T ss_dssp CTTCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECTTC----HHHHHHHHHHHHHHCCSEEEEESSCHHHHHHH T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC----HHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH T ss_conf 88999999958999889999999999999974999999938999----99999999999974999999778640315899 Q ss_pred ---HCCCCCCCCCCC Q ss_conf ---001234211112 Q gi|254780300|r 120 ---MHKIKGPSIINA 131 (316) Q Consensus 120 ---a~~~s~ppVINa 131 (316) ++...+| ||.- T Consensus 79 l~~~~~~~IP-vv~~ 92 (291) T 3l49_A 79 LQKINDAGIP-LFTV 92 (291) T ss_dssp HHHHHHTTCC-EEEE T ss_pred HHHHHHCCCC-EEEC T ss_conf 9999986993-7844 No 116 >1ecf_A Glutamine phosphoribosylpyrophosphate amidotransferase; purine biosynthesis, glycosyltransferase, glutamine amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Probab=57.48 E-value=9 Score=17.22 Aligned_cols=90 Identities=19% Similarity=0.283 Sum_probs=54.7 Q ss_pred EEEECCCCCHHHH--HHCCCCCCCCCCC-------CCCCCCCHHHHHHHHHHHHCC----CCCCCCCCEEECCC-CCCCC Q ss_conf 4652032100554--2001234211112-------345663122332222222012----22100010010355-44330 Q gi|254780300|r 106 IVIRHPYSGAVNS--LMHKIKGPSIINA-------GDGTHEHPSQALLDAFAIRHF----KGKISNLHIAICGD-ILHSR 171 (316) Q Consensus 106 iv~R~~~~~~~~~--~a~~~s~ppVINa-------g~~~~~HP~Q~LaDl~Ti~e~----~g~l~~l~ia~vGD-~~~~~ 171 (316) +|+=.|+.+.... +++.+..| .-.+ |-+. --|+|.+=+.. ++.+ ...++|.+|+.|-| +..++ T Consensus 297 vV~~vPds~~~aA~g~a~~~gip-~~~~likn~y~gRtF-I~p~~~~R~~~-v~~Kl~~~~~~i~gk~ivlvDDSIVRGt 373 (504) T 1ecf_A 297 VVIPIPETSCDIALEIARILGKP-YRQGFVKNRYVGRTF-IMPGQQLRRKS-VRRKLNANRAEFRDKNVLLVDDSIVRGT 373 (504) T ss_dssp EEEECTTTTHHHHHHHHHHHTCC-BCCCEEECSCCCCCC-CCSSSCCCCCC-STTTEEECGGGTTTCCEEEEESCCSSSH T ss_pred EECCCCCCHHHHHHHHHHHCCCH-HHHEEEEEECCCCCC-CCCCHHHHHHH-HHHCCCCCHHHEECCCEEEEECCHHCCC T ss_conf 65368995489999999980963-543024540115534-48757887652-0002232342131362799753010264 Q ss_pred HHHHHHHHHHCCCC---EEEECCCCCCCCC Q ss_conf 13344664201342---0553277532221 Q gi|254780300|r 172 VARSDIMLLNTMGA---RIRVIAPITLLPK 198 (316) Q Consensus 172 v~~S~~~~~~~~g~---~v~~~~P~~~~~~ 198 (316) +....+.++...|+ ++++++|+-..|- T Consensus 374 T~k~ii~~Lr~aGakeIhvri~sPpi~~pc 403 (504) T 1ecf_A 374 TSEQIIEMAREAGAKKVYLASAAPEIRFPN 403 (504) T ss_dssp HHHHHHHHHHHTTCSSEEEEESSCCCCSCC T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCCCCC T ss_conf 199999999976998899997789857875 No 117 >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Probab=56.43 E-value=8.4 Score=17.40 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=5.8 Q ss_pred HHHHHHHHCCCCC Q ss_conf 9999999778142 Q gi|254780300|r 298 MAIIKELLENQNK 310 (316) Q Consensus 298 ~AlL~~~l~~~~~ 310 (316) +..++.++...++ T Consensus 301 k~~i~~l~~~~nk 313 (319) T 1a5z_A 301 KNAINEITAEENK 313 (319) T ss_dssp HHHHHHHHTSCC- T ss_pred HHHHHHHHHHHHC T ss_conf 9999999898854 No 118 >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Probab=55.88 E-value=7.9 Score=17.60 Aligned_cols=19 Identities=5% Similarity=0.366 Sum_probs=8.4 Q ss_pred CCCHHHHHHHHCCCCEEEE Q ss_conf 2247999874136714652 Q gi|254780300|r 91 IADTIATLNALRPNIIVIR 109 (316) Q Consensus 91 ~~Dta~vls~~~~d~iv~R 109 (316) +++.+.-+..+.++++++- T Consensus 96 ~~~i~~~i~~~~p~~iviv 114 (304) T 2v6b_A 96 FRELVPQITRAAPDAVLLV 114 (304) T ss_dssp HHHHHHHHHHHCSSSEEEE T ss_pred HHHHHHHHHHCCCCEEEEE T ss_conf 9999999874299739999 No 119 >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Probab=55.80 E-value=7.2 Score=17.84 Aligned_cols=58 Identities=14% Similarity=0.153 Sum_probs=34.9 Q ss_pred CCCCHHHHHHHHCCCCEEEECCCCCHH-HHH-HCCCCCCCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 422479998741367146520321005-542-00123421111234566312233222222 Q gi|254780300|r 90 NIADTIATLNALRPNIIVIRHPYSGAV-NSL-MHKIKGPSIINAGDGTHEHPSQALLDAFA 148 (316) Q Consensus 90 s~~Dta~vls~~~~d~iv~R~~~~~~~-~~~-a~~~s~ppVINag~~~~~HP~Q~LaDl~T 148 (316) -+.|.++-+..+.+|++++=......+ .+. .+.+..++++..|++.. .-+..++.++- T Consensus 125 v~~~i~~~i~~~~p~a~iin~tNP~~i~t~~~~~~~~~~~~~glC~~~~-~~~~~la~~l~ 184 (450) T 3fef_A 125 IFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVF-GTQKLLAEMVT 184 (450) T ss_dssp HHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTTCEEEECCSHHH-HHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCCC-HHHHHHHHHHH T ss_conf 9999999998319980899824832788845786589874599899830-19999999999 No 120 >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Probab=55.56 E-value=9.7 Score=17.02 Aligned_cols=22 Identities=14% Similarity=0.238 Sum_probs=8.5 Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf 2342111123456631223322222 Q gi|254780300|r 123 IKGPSIINAGDGTHEHPSQALLDAF 147 (316) Q Consensus 123 ~s~ppVINag~~~~~HP~Q~LaDl~ 147 (316) +.+. ||-||. + .-|-+.=.|++ T Consensus 71 adiv-vitag~-~-~kpg~~R~dll 92 (309) T 1ur5_A 71 SDVI-VVTSGA-P-RKPGMSREDLI 92 (309) T ss_dssp CSEE-EECCCC----------CHHH T ss_pred CCEE-EECCCC-C-CCCCCCHHHHH T ss_conf 9999-986898-8-99998878887 No 121 >1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A* Probab=54.40 E-value=10 Score=16.90 Aligned_cols=37 Identities=14% Similarity=0.185 Sum_probs=15.2 Q ss_pred CHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCC Q ss_conf 47999874136714652032100554200123421111 Q gi|254780300|r 93 DTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIIN 130 (316) Q Consensus 93 Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVIN 130 (316) +....+..+.+|+++.-....=...++....... +|| T Consensus 70 ~l~~~l~~~~~Dliv~~g~~~ii~~~il~~~~~~-~iN 106 (209) T 1meo_A 70 AIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGK-MLN 106 (209) T ss_dssp HHHHHHHHTTCCEEEEESCCSCCCHHHHHHTTTS-EEE T ss_pred HHHHHHHHHCCCEEEEECCCHHCCHHHHHHHHCC-CEE T ss_conf 9999998619999999560010778999876079-587 No 122 >2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1 Probab=54.03 E-value=4.6 Score=19.11 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=48.5 Q ss_pred HHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHH Q ss_conf 87413671465203210055420012342111123456631223322222220122210001001035544330133446 Q gi|254780300|r 98 LNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDI 177 (316) Q Consensus 98 ls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~ 177 (316) +..-.+|+++-|-.....+. ++.++| ||.---+.+ |++--....... +-+|+.+| +.++....- T Consensus 59 ~~~~~~DviISRG~ta~~Ir---~~~~iP-VVeI~vs~~--------Dil~aL~~a~~~-~~kIavVg---f~~~~~~~~ 122 (225) T 2pju_A 59 LANERCDAIIAAGSNGAYLK---SRLSVP-VILIKPSGY--------DVLQFLAKAGKL-TSSIGVVT---YQETIPALV 122 (225) T ss_dssp TTTSCCSEEEEEHHHHHHHH---TTCSSC-EEEECCCHH--------HHHHHHHHTTCT-TSCEEEEE---ESSCCHHHH T ss_pred HHCCCCCEEEECCHHHHHHH---HHCCCC-EEEEECCHH--------HHHHHHHHHHHH-CCCEEEEE---CCCCCHHHH T ss_conf 86499869996856899999---858998-899707876--------899999999975-89889993---764036999 Q ss_pred HHHHCCCCEEEECCCC Q ss_conf 6420134205532775 Q gi|254780300|r 178 MLLNTMGARIRVIAPI 193 (316) Q Consensus 178 ~~~~~~g~~v~~~~P~ 193 (316) .....+|.++.+.... T Consensus 123 ~~~~ll~~~i~~~~~~ 138 (225) T 2pju_A 123 AFQKTFNLRLDQRSYI 138 (225) T ss_dssp HHHHHHTCCEEEEEES T ss_pred HHHHHHCCCEEEEEEC T ss_conf 9999969944999966 No 123 >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* Probab=53.28 E-value=11 Score=16.78 Aligned_cols=95 Identities=16% Similarity=0.271 Sum_probs=53.2 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC---------------------------C Q ss_conf 2100010010355443301334466420134205532775322211212343---------------------------3 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGV---------------------------E 206 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~---------------------------~ 206 (316) |.+...++..+|- +.+...-+..+..+|+.+..........+.....+. . T Consensus 168 g~v~p~~v~viG~---G~~g~~A~~~a~~lga~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (401) T 1x13_A 168 GKVPPAKVMVIGA---GVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKA 244 (401) T ss_dssp EEECCCEEEEECC---SHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHH T ss_pred CCCCCCEEEEECC---CHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEEEEEECCCCCCCCEEEECCHHHHHH T ss_conf 8978754999767---5788999999853797799943778999999874685058864202245785013121556677 Q ss_pred CCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEE Q ss_conf 005845603686221000113312333444455542023575889998379985995 Q gi|254780300|r 207 VFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316) Q Consensus 207 ~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316) ....+.+.+..+|+|+......-+ ..+.-|+++.++..++.+++- T Consensus 245 ~~~~~~~~~~~~DivI~~~~~pg~------------~aP~lit~e~v~~mk~gsVIv 289 (401) T 1x13_A 245 EMELFAAQAKEVDIIVTTALIPGK------------PAPKLITREMVDSMKAGSVIV 289 (401) T ss_dssp HHHHHHHHHHHCSEEEECCCCTTS------------CCCCCBCHHHHHTSCTTCEEE T ss_pred HHHHHHHHCCCCCEEEEEEEECCC------------CCCCCCHHHHHHHHCCCCEEE T ss_conf 888888740554438884000688------------788557599862021798799 No 124 >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 Probab=52.90 E-value=11 Score=16.74 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=48.9 Q ss_pred HHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCC-EEEECCCCCCCCC---CCCCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 2012221000100103554433013344664201342-0553277532221---12123433005845603686221000 Q gi|254780300|r 149 IRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGA-RIRVIAPITLLPK---DISNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 149 i~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~-~v~~~~P~~~~~~---~~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) ..+.+|++++.++..+|- +-++...+..+...|. +++++.-..-... ...+....-+.++.+++..+|+|++. T Consensus 158 ~~~~~~~l~~~~vLviGa---Gem~~~~~~~L~~~g~~~i~v~nRt~~rA~~la~~~~~~~~~~~~l~~~l~~~DiVIsa 234 (404) T 1gpj_A 158 AERELGSLHDKTVLVVGA---GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSA 234 (404) T ss_dssp HHHHHSCCTTCEEEEESC---CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEEC T ss_pred HHHHCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCEEECHHHHHHHHCCCCEEEEE T ss_conf 998615733481899838---48899999999956888607866876678887650597574268777401238889994 Q ss_pred EE Q ss_conf 11 Q gi|254780300|r 225 RM 226 (316) Q Consensus 225 ~~ 226 (316) .- T Consensus 235 T~ 236 (404) T 1gpj_A 235 TA 236 (404) T ss_dssp CS T ss_pred CC T ss_conf 17 No 125 >2gci_A Probable alpha-methylacyl-COA racemase MCR; COA transferase, proton transfer, coenzyme A, isomerase; HET: MRR; 1.60A {Mycobacterium tuberculosis} SCOP: c.123.1.1 PDB: 2gce_A* 1x74_A* 2gd0_A* 2gd2_A* 2gd6_A* Probab=51.79 E-value=11 Score=16.63 Aligned_cols=30 Identities=10% Similarity=-0.048 Sum_probs=13.3 Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEECCCCCC Q ss_conf 233222222201222100010010355443 Q gi|254780300|r 140 SQALLDAFAIRHFKGKISNLHIAICGDILH 169 (316) Q Consensus 140 ~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~ 169 (316) .|+++-++.+.-..+.---..-.+++|... T Consensus 130 ~~A~sG~~~~~g~~~~~P~~~~~~~~d~~~ 159 (360) T 2gci_A 130 YISLNGILHAIGRGDERPVPPLNLVGDFGG 159 (360) T ss_dssp HTTTTSTGGGSSCTTSCCCCCTTCCCCCCT T ss_pred EEECCCCHHHCCCCCCCCCCCCCHHHHHHH T ss_conf 781377332147999998788701443888 No 126 >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* Probab=50.25 E-value=5.6 Score=18.54 Aligned_cols=24 Identities=17% Similarity=0.488 Sum_probs=19.0 Q ss_pred CCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 123433005845603686221000 Q gi|254780300|r 201 SNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 201 ~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) +..|+++++|..|++++||+|+.. T Consensus 125 E~~Gv~vt~D~~EAV~~ADiVIla 148 (358) T 2b0j_A 125 EDVGLKVTSDDREAVEGADIVITW 148 (358) T ss_dssp GGGTCEEESCHHHHHTTCSEEEEC T ss_pred HHCCCEEECCHHHHHHCCCEEEEE T ss_conf 877988876899998339999994 No 127 >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 helix bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* Probab=48.53 E-value=12 Score=16.43 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=36.0 Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHH-CCCC-EEEECCCCCC----CCCC---CCCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 0010010355443301334466420-1342-0553277532----2211---2123433005845603686221000 Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLN-TMGA-RIRVIAPITL----LPKD---ISNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~-~~g~-~v~~~~P~~~----~~~~---~~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) +..+++++|- +..++..+.++. .++. ++.+..+..- +.++ ..+..+..+.++++++.+||+|.+. T Consensus 128 da~~l~iiGa---G~QA~~~l~Al~~v~~i~~V~v~~r~~~~~~~~~~~~~~~~g~~v~~~~s~e~av~~ADII~t~ 201 (350) T 1x7d_A 128 NARKMALIGN---GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTV 201 (350) T ss_dssp TCCEEEEECC---STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEEC T ss_pred CCCEEEEECC---CHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHCCCEEEEE T ss_conf 8863899736---1878999999985189549999846815899999876540697756559999997318835762 No 128 >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* Probab=47.84 E-value=13 Score=16.24 Aligned_cols=169 Identities=12% Similarity=0.093 Sum_probs=90.5 Q ss_pred EEEEEEECCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-CCCCEEEECCCCCHHHHHHCCCCC Q ss_conf 69999607873378999-9798761352111233332101333422479998741-367146520321005542001234 Q gi|254780300|r 48 TQINLFLETSTRTQTSF-EVAGKLLGVHVININTKNSAMKKGENIADTIATLNAL-RPNIIVIRHPYSGAVNSLMHKIKG 125 (316) Q Consensus 48 ~~~~lF~kpStRTR~SF-e~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~-~~d~iv~R~~~~~~~~~~a~~~s~ 125 (316) .+.++=..|+.++.+.. ..++.++|...- +.. +...+.+.+.+.-++.- .+|.|++-.|....+.+-.--..+ T Consensus 40 avIlvgdd~aS~~Yv~~K~k~a~~~Gi~~~-l~~----~~~~~~l~~~I~~LN~D~~v~GIiVQlPLP~~ld~~~il~~I 114 (320) T 1edz_A 40 VGFLANNDPAAKMYATWTQKTSESMGFRYD-LRV----IEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVV 114 (320) T ss_dssp EEEECCCCHHHHHHHHHHHHHHHHHTCEEE-EEE----CSSGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTS T ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCEEE-CCC----CCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHCC T ss_conf 999818987699999999999996889786-444----686889999999974599765179847999631178898548 Q ss_pred CCC--------CCCCC-------------CCCCCHHHHHHHHHHHHCCC----------CCCCCCCEEECCCCCCCCHHH Q ss_conf 211--------11234-------------56631223322222220122----------210001001035544330133 Q gi|254780300|r 126 PSI--------INAGD-------------GTHEHPSQALLDAFAIRHFK----------GKISNLHIAICGDILHSRVAR 174 (316) Q Consensus 126 ppV--------INag~-------------~~~~HP~Q~LaDl~Ti~e~~----------g~l~~l~ia~vGD~~~~~v~~ 174 (316) .|- .|+|- ....-||-+++=+- |.++. .+++|.+++.+|. .+-|.. T Consensus 115 ~p~KDVDGl~~~n~g~L~~~~~~~~~~~~~~~~~PcTp~ai~~-LL~~y~i~~~~~~~g~~l~GK~vvVIGr--S~iVGk 191 (320) T 1edz_A 115 CKEKDVEGLNHVYYQNLYHNVRYLDKENRLKSILPCTPLAIVK-ILEFLKIYNNLLPEGNRLYGKKCIVINR--SEIVGR 191 (320) T ss_dssp CTTTBTTCCSHHHHHHHHTTCCBSSSSSCSBCCCCHHHHHHHH-HHHHTTCSCTTSCTTCTTTTCEEEEECC--CTTTHH T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHH-HHHHHHHCCCCCCCCCCCCCCEEEEEEC--CCCCCH T ss_conf 9777748698778878842864223235667768888899999-9998422024555566667876999825--665548 Q ss_pred HHHHHHHCCCCEEEECCCCCC---CCC-C--CCCCC----CCCCC-CHHHCCCCCCEEEEE Q ss_conf 446642013420553277532---221-1--21234----33005-845603686221000 Q gi|254780300|r 175 SDIMLLNTMGARIRVIAPITL---LPK-D--ISNMG----VEVFH-DMQKGLKNVDVIMIL 224 (316) Q Consensus 175 S~~~~~~~~g~~v~~~~P~~~---~~~-~--~~~~~----~~~~~-d~~ea~~~aDvv~~~ 224 (316) -+..++..-|+.|+.|.-... .+. + ....+ ...+. .+++...++|++++. T Consensus 192 Pla~lL~~~~aTVt~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~d~l~~~~~~aDIvI~a 252 (320) T 1edz_A 192 PLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITG 252 (320) T ss_dssp HHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEEC T ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEC T ss_conf 9999997689879984246500026886258862133431211077888763046757852 No 129 >1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* Probab=47.75 E-value=13 Score=16.23 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=33.5 Q ss_pred EEEEEEECC---CCHHH----HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHH Q ss_conf 699996078---73378----99997987613521112333321013334224799987413671465203210055420 Q gi|254780300|r 48 TQINLFLET---STRTQ----TSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLM 120 (316) Q Consensus 48 ~~~~lF~kp---StRTR----~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a 120 (316) .+..++-.| +-|-+ .+++.-+.++|..+...+.. +. .+....+..+.+|+++.-....-...++. T Consensus 28 ~i~~VvT~pd~~~grg~~~~~~~v~~~A~~~~i~~~~~~~~----~~----~~~~~~~~~~~~dl~i~~~~~~iip~~~l 99 (314) T 1fmt_A 28 NVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSL----RP----QENQQLVAELQADVMVVVAYGLILPKAVL 99 (314) T ss_dssp EEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCS----CS----HHHHHHHHHTTCSEEEEESCCSCCCHHHH T ss_pred CEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCC----CC----HHHHHHHHHCCCCEEEEEECCCCCCHHHH T ss_conf 77999909998556888488997999999859984035234----62----88999998519999999712646999998 Q ss_pred CCCCCCCCCC Q ss_conf 0123421111 Q gi|254780300|r 121 HKIKGPSIIN 130 (316) Q Consensus 121 ~~~s~ppVIN 130 (316) .....- +|| T Consensus 100 ~~~~~g-~iN 108 (314) T 1fmt_A 100 EMPRLG-CIN 108 (314) T ss_dssp HSSTTC-EEE T ss_pred HCCCCC-EEE T ss_conf 578977-782 No 130 >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} Probab=47.17 E-value=13 Score=16.17 Aligned_cols=102 Identities=18% Similarity=0.255 Sum_probs=55.1 Q ss_pred CCCEEECCCCCCCCHHHHHHHHHH-CCCC-EEEECCCCCC----CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHH Q ss_conf 010010355443301334466420-1342-0553277532----221121234330058456036862210001133123 Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLN-TMGA-RIRVIAPITL----LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316) Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~-~~g~-~v~~~~P~~~----~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316) ..+++++|- +..++..+.++. .++. ++++..+..- +.+.. ...+++..++++++.++|+|++..-..+-. T Consensus 135 ~~~l~iiG~---G~Qa~~~l~a~~~~~~i~~v~v~~r~~~~~~~f~~~l-~~~~~~~~~~~~av~~aDiVitaT~s~~P~ 210 (312) T 2i99_A 135 SEVLCILGA---GVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTV-QGEVRVCSSVQEAVAGADVIITVTLATEPI 210 (312) T ss_dssp CCEEEEECC---SHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHS-SSCCEECSSHHHHHTTCSEEEECCCCSSCC T ss_pred CCEEEEECC---CHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH-HCCCEECCCHHHHHHCCCEEEEECCCCCCC T ss_conf 737999667---1778999999997215636999953816999999984-146413389999951599899714778884 Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCCC-CCCCHHHHCCC Q ss_conf 3344445554202357588999837998599558998768-74476797699 Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRN-YEISSSVADGS 282 (316) Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~Rg-~Ev~~~v~d~~ 282 (316) ++.+ ..++++.+.....-..+ .|++++++..- T Consensus 211 ----------------~~~~---~l~~g~~v~~iG~~~~~~~El~~~~~~~a 243 (312) T 2i99_A 211 ----------------LFGE---WVKPGAHINAVGASRPDWRELDDELMKEA 243 (312) T ss_dssp ----------------BCGG---GSCTTCEEEECCCCSTTCCSBCHHHHHHS T ss_pred ----------------CCHH---HCCCCCEEEECCCCCCCCCCCCHHHHHCC T ss_conf ----------------3275---46876589741679986032087888368 No 131 >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Probab=45.93 E-value=14 Score=16.05 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=11.6 Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 01234211112345663122332222222 Q gi|254780300|r 121 HKIKGPSIINAGDGTHEHPSQALLDAFAI 149 (316) Q Consensus 121 ~~~s~ppVINag~~~~~HP~Q~LaDl~Ti 149 (316) +.+.++ ||-||- + .-|-|.=.|++.. T Consensus 81 ~~adiV-vitag~-~-~k~g~~R~dll~~ 106 (328) T 2hjr_A 81 QNSDVV-IITAGV-P-RKPNMTRSDLLTV 106 (328) T ss_dssp TTCSEE-EECCSC-C-CCTTCCSGGGHHH T ss_pred CCCCEE-EEECCC-C-CCCCCCHHHHHHH T ss_conf 678789-997136-8-9999988888760 No 132 >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A Probab=44.41 E-value=11 Score=16.64 Aligned_cols=95 Identities=7% Similarity=0.122 Sum_probs=57.6 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC-------CCCCCCCCHHHCCCCCCEEEEEEE Q ss_conf 2100010010355443301334466420134205532775322211212-------343300584560368622100011 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISN-------MGVEVFHDMQKGLKNVDVIMILRM 226 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~-------~~~~~~~d~~ea~~~aDvv~~~~~ 226 (316) |.+...+++.+|. +++...-+..+..+|+.++.........+.... ........+.+.+.++|+++..-. T Consensus 163 ~~v~p~kv~ilG~---G~~g~~a~~~a~~~Ga~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIvI~~~~ 239 (361) T 1pjc_A 163 PGVKPGKVVILGG---GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVL 239 (361) T ss_dssp TTBCCCEEEEECC---SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCC T ss_pred CCCCCCEEEEECC---CEECHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 9988734999658---4101257899985698799963758899998875064022202446678887413645775432 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEE Q ss_conf 3312333444455542023575889998379985995 Q gi|254780300|r 227 QQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316) Q Consensus 227 ~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316) +..+ ..++-++++.++..++.+++. T Consensus 240 ~~g~------------~~p~li~~~~~~~mk~gsVIv 264 (361) T 1pjc_A 240 VPGR------------RAPILVPASLVEQMRTGSVIV 264 (361) T ss_dssp CTTS------------SCCCCBCHHHHTTSCTTCEEE T ss_pred CCCC------------CCCCHHHHHHHHCCCCCCEEE T ss_conf 2898------------898100588874679987899 No 133 >3fr7_A Putative ketol-acid reductoisomerase (OS05G0573700 protein); rossmann fold, NADPH, knotted protein; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Probab=43.51 E-value=9.6 Score=17.04 Aligned_cols=14 Identities=7% Similarity=-0.121 Sum_probs=7.1 Q ss_pred CCCCC-CEEEEEEEC Q ss_conf 21289-769999607 Q gi|254780300|r 42 TRLQG-LTQINLFLE 55 (316) Q Consensus 42 ~~L~g-k~~~~lF~k 55 (316) +.|+| |+++.+=+- T Consensus 49 ~~~kg~K~IaVIGyG 63 (525) T 3fr7_A 49 EAFKGIKQIGVIGWG 63 (525) T ss_dssp HHTTTCSEEEEECCT T ss_pred HHHCCCCEEEEECCC T ss_conf 886589879996867 No 134 >1q7e_A Hypothetical protein YFDW; structural genomics, intertwined dimer, PSI, protein structure initiative; HET: MSE; 1.60A {Escherichia coli} SCOP: c.123.1.1 PDB: 1pqy_A* 1q6y_A* 1pt7_A 1pt5_A 1pt8_A* Probab=43.43 E-value=15 Score=15.80 Aligned_cols=11 Identities=27% Similarity=0.036 Sum_probs=5.5 Q ss_pred HHHHHHHHHHH Q ss_conf 23322222220 Q gi|254780300|r 140 SQALLDAFAIR 150 (316) Q Consensus 140 ~Q~LaDl~Ti~ 150 (316) .|+++-++.+. T Consensus 145 ~qA~sG~~~~~ 155 (428) T 1q7e_A 145 AQAAGGAASTT 155 (428) T ss_dssp HHHHTTHHHHS T ss_pred HHHCCCCCCCC T ss_conf 12025651245 No 135 >3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural genomics center for infectious disease; 2.20A {Anaplasma phagocytophilum HZ} Probab=43.32 E-value=15 Score=15.79 Aligned_cols=15 Identities=7% Similarity=0.138 Sum_probs=6.5 Q ss_pred HHHHCCCCEEEECCC Q ss_conf 642013420553277 Q gi|254780300|r 178 MLLNTMGARIRVIAP 192 (316) Q Consensus 178 ~~~~~~g~~v~~~~P 192 (316) ......|+.+..+.+ T Consensus 130 ~g~~~tG~Tih~v~~ 144 (215) T 3kcq_A 130 AGVKIAGCTLHYVYQ 144 (215) T ss_dssp HTCSEEEEEEEECCS T ss_pred CCCCCCCCEEEEEEC T ss_conf 798242758999706 No 136 >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum atcc 13032} Probab=43.24 E-value=15 Score=15.78 Aligned_cols=17 Identities=6% Similarity=-0.003 Sum_probs=6.2 Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 86877569999999999 Q gi|254780300|r 287 QYQVEMGVAVRMAIIKE 303 (316) Q Consensus 287 ~~Qa~Nrl~~~~AlL~~ 303 (316) ++++-+-+-+-.|+... T Consensus 307 ~eda~~~~~v~~A~~~S 323 (344) T 3euw_A 307 FEDGVIALELANACLES 323 (344) T ss_dssp HHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999999999 No 137 >2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} Probab=43.20 E-value=9.5 Score=17.08 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=49.3 Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHH Q ss_conf 99987413671465203210055420012342111123456631223322222220122210001001035544330133 Q gi|254780300|r 95 IATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVAR 174 (316) Q Consensus 95 a~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~ 174 (316) |+-+.. ++|+|+-|-.....+. ++.++| ||.---+.+ |++-....... .+-+|+++| +.++.. T Consensus 45 A~~l~~-~~DVIISRGgTa~~Ir---~~~~iP-VVeI~vs~~--------Dil~al~~a~~-~~~kiavvg---f~~~~~ 107 (196) T 2q5c_A 45 AFGLQD-EVDAIISRGATSDYIK---KSVSIP-SISIKVTRF--------DTMRAVYNAKR-FGNELALIA---YKHSIV 107 (196) T ss_dssp HHHHTT-TCSEEEEEHHHHHHHH---TTCSSC-EEEECCCHH--------HHHHHHHHHGG-GCSEEEEEE---ESSCSS T ss_pred HHHHHC-CCCEEEECCHHHHHHH---HHCCCC-EEEECCCHH--------HHHHHHHHHHH-HCCCEEEEE---CCCCCH T ss_conf 997543-9879998965899999---828997-799807887--------99999999997-589789996---785015 Q ss_pred HHHHHHHCCCCEEEECCCCC Q ss_conf 44664201342055327753 Q gi|254780300|r 175 SDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 175 S~~~~~~~~g~~v~~~~P~~ 194 (316) ..-..+..+|.++....... T Consensus 108 ~~~~i~~ll~~~i~~~~~~~ 127 (196) T 2q5c_A 108 DKHEIEAMLGVKIKEFLFSS 127 (196) T ss_dssp CHHHHHHHHTCEEEEEEECS T ss_pred HHHHHHHHHCCCEEEEEECC T ss_conf 89999998599559999668 No 138 >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* Probab=42.97 E-value=15 Score=15.76 Aligned_cols=25 Identities=12% Similarity=0.165 Sum_probs=11.1 Q ss_pred CCHHHHHHHHHH-HHCCCCCCCCCCE Q ss_conf 312233222222-2012221000100 Q gi|254780300|r 137 EHPSQALLDAFA-IRHFKGKISNLHI 161 (316) Q Consensus 137 ~HP~Q~LaDl~T-i~e~~g~l~~l~i 161 (316) +.|+-+++-+.+ +..+.+.++.-+| T Consensus 118 sNPvDv~t~ia~~~~k~~~~~~~~~i 143 (312) T 3hhp_A 118 TNPVNTTVAIAAEVLKKAGVYDKNKL 143 (312) T ss_dssp SSCHHHHHHHHHHHHHHTTCCCTTSE T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCEE T ss_conf 58724889999999887389980579 No 139 >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 2.20A {Pseudomonas syringae PV} Probab=42.37 E-value=15 Score=15.70 Aligned_cols=141 Identities=16% Similarity=0.172 Sum_probs=70.7 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEE-CCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCC Q ss_conf 34566312233222222201222100010010-35544330133446642013420553277532221121234330058 Q gi|254780300|r 132 GDGTHEHPSQALLDAFAIRHFKGKISNLHIAI-CGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHD 210 (316) Q Consensus 132 g~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~-vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d 210 (316) .++. .|-.|+|.+-.- .|.+. ..|+. +.+ ..-+.++. ...|..+........ .+ .. .... T Consensus 112 vS~~-g~~l~~ll~~~~----~g~L~-~~i~~ViSN---~~d~~~la---~~~~ip~~~~~~~~~-~~--~~----~e~~ 172 (302) T 3o1l_A 112 ASRE-SHCLADLLHRWH----SDELD-CDIACVISN---HQDLRSMV---EWHDIPYYHVPVDPK-DK--EP----AFAE 172 (302) T ss_dssp ECSC-CHHHHHHHHHHH----TTCSC-SEEEEEEES---SSTTHHHH---HTTTCCEEECCCCSS-CC--HH----HHHH T ss_pred ECCC-CCCHHHHHHHHH----CCCCC-EEEEEEECC---CHHHHHHH---HHHCCCEEEEECCCC-CH--HH----HHHH T ss_conf 8189-843999999987----79987-268898258---55378889---986399599937843-35--88----8999 Q ss_pred HHHCC--CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC--CCCCCCC-------------- Q ss_conf 45603--68622100011331233344445554202357588999837998599558--9987687-------------- Q gi|254780300|r 211 MQKGL--KNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHP--GPINRNY-------------- 272 (316) Q Consensus 211 ~~ea~--~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc--LP~~Rg~-------------- 272 (316) +-+.+ .+.|+++..+|. .-+..++++..+...+=.|| ||.+||. T Consensus 173 ~~~~l~~~~~Dlivlagy~------------------~il~~~~l~~~~~~iiNiHpSlLP~~rG~~p~~~ai~~g~k~~ 234 (302) T 3o1l_A 173 VSRLVGHHQADVVVLARYM------------------QILPPQLCREYAHQVINIHHSFLPSFVGAKPYHQASLRGVKLI 234 (302) T ss_dssp HHHHHHHTTCSEEEESSCC------------------SCCCTTHHHHTTTCEEEEESSCTTSSCSSCHHHHHHHHTCSEE T ss_pred HHHHHHHCCCEEEEEECCC------------------CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCEE T ss_conf 9999873598399973135------------------4378789863212440057876841258582699998499289 Q ss_pred -----CCCHHHHCCCC---C------------H--HHHHHHHHHHHHHHHHHHHHCCCCCC Q ss_conf -----44767976997---0------------1--68687756999999999997781422 Q gi|254780300|r 273 -----EISSSVADGSQ---S------------I--IQYQVEMGVAVRMAIIKELLENQNKI 311 (316) Q Consensus 273 -----Ev~~~v~d~~~---s------------~--v~~Qa~Nrl~~~~AlL~~~l~~~~~~ 311 (316) .|+++++.||= . + -..++|..++.+. +.++++++-.+ T Consensus 235 G~TvH~v~~~lD~GpII~Q~~v~I~~~dt~~~L~~k~~~~e~~ll~~a--i~~~~e~ri~~ 293 (302) T 3o1l_A 235 GATCHYVTEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVEKMVLARG--LRAHLEDRVLV 293 (302) T ss_dssp EEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH--HHHHHTTCEEE T ss_pred EEEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHCCEEE T ss_conf 689999848974787489999873999999999999999999999999--99998199799 No 140 >3lou_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia mallei} Probab=41.92 E-value=16 Score=15.65 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=73.2 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCH Q ss_conf 34566312233222222201222100010010355443301334466420134205532775322211212343300584 Q gi|254780300|r 132 GDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDM 211 (316) Q Consensus 132 g~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~ 211 (316) .++. .|-.|+|.+-.- .|.+. ..|+.|. -+..-+..+ ....|..+... |.....+ .+....+ T Consensus 102 vSg~-g~~L~~Ll~~~~----~g~L~-~eI~~Vi--SN~~~~~~l---~~a~~ip~~~~-~~~~~~~------~~~e~~~ 163 (292) T 3lou_A 102 VSKL-EHCLADLLFRWK----MGELK-MDIVGIV--SNHPDFAPL---AAQHGLPFRHF-PITADTK------AQQEAQW 163 (292) T ss_dssp ECSC-CHHHHHHHHHHH----HTSSC-CEEEEEE--ESSSTTHHH---HHHTTCCEEEC-CCCSSCH------HHHHHHH T ss_pred ECCC-CCCHHHHHHHHH----CCCCC-EEEEEEE--CCCCCHHHH---HHHHCCCEEEE-ECCCCCH------HHHHHHH T ss_conf 6799-826999999997----69998-1799997--489427999---99754984786-1587627------8899999 Q ss_pred HHCC--CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC--CCCCCCC--------------- Q ss_conf 5603--68622100011331233344445554202357588999837998599558--9987687--------------- Q gi|254780300|r 212 QKGL--KNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHP--GPINRNY--------------- 272 (316) Q Consensus 212 ~ea~--~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc--LP~~Rg~--------------- 272 (316) .+.+ .+.|.|+..+|. .-+..++++..+...+=.|| ||.+||. T Consensus 164 ~~~l~~~~~Dlivlagym------------------~Il~~~~l~~~~~~iiNiHpSlLP~~~G~~~~~~ai~~g~k~~G 225 (292) T 3lou_A 164 LDVFETSGAELVILARYM------------------QVLSPEASARLANRAINIHHSFLPGFKGAKPYHQAHARGVKLIG 225 (292) T ss_dssp HHHHHHHTCSEEEESSCC------------------SCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEE T ss_pred HHHHHHCCCEEEEHHHHC------------------CCCCCHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCEEE T ss_conf 999862498099847813------------------41770633216785599656866233788818899977995799 Q ss_pred ----CCCHHHHCCC---CCH--------------HHHHHHHHHHHHHHHHHHHHCCCCCCCC Q ss_conf ----4476797699---701--------------6868775699999999999778142220 Q gi|254780300|r 273 ----EISSSVADGS---QSI--------------IQYQVEMGVAVRMAIIKELLENQNKITQ 313 (316) Q Consensus 273 ----Ev~~~v~d~~---~s~--------------v~~Qa~Nrl~~~~AlL~~~l~~~~~~~~ 313 (316) -|+++++.|| +.. -..++|.+++.+. +.++++++=.+.+ T Consensus 226 ~TvH~v~~~lD~GpII~Q~~~~I~~~dt~~~L~~~~~~~E~~~l~~a--i~~~~e~rv~~~~ 285 (292) T 3lou_A 226 ATAHFVTDDLDEGPIIEQVVERVDHSYRPEQLLAVGRDVECITLARA--VKAFIERRVFLNG 285 (292) T ss_dssp EEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHH--HHHHHTTCEEEET T ss_pred EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHCCEEECC T ss_conf 99999948983798069999874999999999999999999999999--9999819989909 No 141 >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Probab=41.03 E-value=16 Score=15.57 Aligned_cols=42 Identities=10% Similarity=0.000 Sum_probs=16.1 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCC Q ss_conf 12233222222201222100010010355443301334466420134 Q gi|254780300|r 138 HPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMG 184 (316) Q Consensus 138 HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g 184 (316) -|+-.++-+ +++..|......|.-.. .+ -++|.--.++..+| T Consensus 134 NPvd~~t~~--~~k~sg~~~~rvig~gt-~L--Ds~R~~~~la~~l~ 175 (329) T 1b8p_A 134 NPANTNAYI--AMKSAPSLPAKNFTAML-RL--DHNRALSQIAAKTG 175 (329) T ss_dssp SSHHHHHHH--HHHTCTTSCGGGEEECC-HH--HHHHHHHHHHHHHT T ss_pred CCHHHHHHH--HHHHCCCCCCCEEEEEC-HH--HHHHHHHHHHHHHC T ss_conf 907889999--99975999856686401-57--99999899999958 No 142 >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 1llc_A* Probab=40.90 E-value=16 Score=15.55 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=10.0 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEEECCC Q ss_conf 12233222222201222100010010355 Q gi|254780300|r 138 HPSQALLDAFAIRHFKGKISNLHIAICGD 166 (316) Q Consensus 138 HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD 166 (316) -|+-.++-++ ++..| +..-++.-.|- T Consensus 126 NPvd~~~~~~--~~~sg-~~~~rvig~gt 151 (326) T 2zqz_A 126 NPVDILTYAT--WKLSG-FPKNRVVGSGT 151 (326) T ss_dssp SSHHHHHHHH--HHHHC-CCGGGEEECTT T ss_pred CCCHHHHHHH--HHHHC-CCHHHEEECCC T ss_conf 8614899999--99709-98265770573 No 143 >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.95A {Rhodopseudomonas palustris} Probab=40.77 E-value=16 Score=15.54 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=72.5 Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCH Q ss_conf 34566312233222222201222100010010355443301334466420134205532775322211212343300584 Q gi|254780300|r 132 GDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDM 211 (316) Q Consensus 132 g~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~ 211 (316) .++. .|..|+|+|-. ..|.+. ..|+.|- ||-...........+..+..+ |.....+... ...+ T Consensus 96 vSg~-g~~l~~ll~~~----~~g~L~-~~i~~Vi----Sn~~~~~~~~~~~~~ip~~~~-~~~~~~~~~~------e~~~ 158 (288) T 3obi_A 96 VSQS-DHCLADILYRW----RVGDLH-MIPTAIV----SNHPRETFSGFDFGDIPFYHF-PVNKDTRRQQ------EAAI 158 (288) T ss_dssp ECSC-CHHHHHHHHHH----HTTSSC-EEEEEEE----ESSCGGGSCCTTTTTCCEEEC-CCCTTTHHHH------HHHH T ss_pred EECC-CHHHHHHHHHH----HCCCCC-CEEEEEE----CCCHHHHHHHHHHCCCCEEEE-CCCCCCHHHH------HHHH T ss_conf 9478-33899999999----749998-4378995----685658997887479998992-8888757999------9989 Q ss_pred HHCC--CCCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECC--CCCCCCC--------------- Q ss_conf 5603--68622100011331233344445554202357588999837998599558--9987687--------------- Q gi|254780300|r 212 QKGL--KNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHP--GPINRNY--------------- 272 (316) Q Consensus 212 ~ea~--~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHc--LP~~Rg~--------------- 272 (316) -+.+ .+.|+|+..+|. +-+..++++..+...+=+|| ||.+||. T Consensus 159 l~~l~~~~~Dlivlag~~------------------~il~~~~l~~~~~~iiNiHpslLP~~rG~~p~~~ai~~g~k~~G 220 (288) T 3obi_A 159 TALIAQTHTDLVVLARYM------------------QILSDEMSARLAGRCINIHHSFLPGFKGAKPYHQAFDRGVKLIG 220 (288) T ss_dssp HHHHHHHTCCEEEESSCC------------------SCCCHHHHHHTTTSEEEEEEECSSCCCSSCHHHHHHHHTCSEEE T ss_pred HHHHHHCCCCEEEEEEEC------------------CCCCHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCEEE T ss_conf 999985498699984005------------------43782666425786534179778555765769999984996600 Q ss_pred ----CCCHHHHCCCC---------------CHH--HHHHHHHHHHHHHHHHHHHCCCC Q ss_conf ----44767976997---------------016--86877569999999999977814 Q gi|254780300|r 273 ----EISSSVADGSQ---------------SII--QYQVEMGVAVRMAIIKELLENQN 309 (316) Q Consensus 273 ----Ev~~~v~d~~~---------------s~v--~~Qa~Nrl~~~~AlL~~~l~~~~ 309 (316) .|+++++.||= ++. ..++|.+++.+ .+.+++.++= T Consensus 221 ~TvH~v~~~lD~G~II~Q~~~~I~~~dt~~~l~~k~~~~e~~~l~~--al~~~~~~ri 276 (288) T 3obi_A 221 ATAHYVTSALDEGPIIDQDVERISHRDTPADLVRKGRDIERRVLSR--ALHYHLDDRV 276 (288) T ss_dssp EEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHHHHHHHH--HHHHHHTTCE T ss_pred EEEEEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHCCCE T ss_conf 3899971798678737999987699999999999999999999999--9999980999 No 144 >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* Probab=40.40 E-value=12 Score=16.43 Aligned_cols=95 Identities=11% Similarity=0.124 Sum_probs=56.3 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC----CCC-CCCCC--CCHHHCCCCCCEEEEEEE Q ss_conf 21000100103554433013344664201342055327753222112----123-43300--584560368622100011 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI----SNM-GVEVF--HDMQKGLKNVDVIMILRM 226 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~----~~~-~~~~~--~d~~ea~~~aDvv~~~~~ 226 (316) |.+..-++..+|- +++...-+..+..+|+.+.......-..... ... ..+.. ....+.++++|+|++... T Consensus 164 g~v~pakv~VlGa---G~ag~~A~~~a~~lga~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DivI~~~~ 240 (377) T 2vhw_A 164 PGVEPADVVVIGA---GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVL 240 (377) T ss_dssp TTBCCCEEEEECC---SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCC T ss_pred CCCCCCEEEEECC---CCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 8867765999678---6201357999975698899824126777667876377642213256655420024428997124 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEE Q ss_conf 3312333444455542023575889998379985995 Q gi|254780300|r 227 QQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316) Q Consensus 227 ~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316) +..+. .+.-++++.++..++.+++. T Consensus 241 i~g~~------------~p~li~~~~v~~mk~gsVIv 265 (377) T 2vhw_A 241 VPGAK------------APKLVSNSLVAHMKPGAVLV 265 (377) T ss_dssp CTTSC------------CCCCBCHHHHTTSCTTCEEE T ss_pred CCCCC------------CCCCCHHHHHHCCCCCCEEE T ss_conf 57988------------98347198985278998899 No 145 >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* Probab=39.80 E-value=17 Score=15.44 Aligned_cols=87 Identities=13% Similarity=0.141 Sum_probs=35.1 Q ss_pred CCHHHHHHHHCCCCEEEECCCCCHHHHH---HCCCC-CCCCCCCCCCCCCCH--HHHHHHHHHHHCCCCCCCCCCE-EEC Q ss_conf 2479998741367146520321005542---00123-421111234566312--2332222222012221000100-103 Q gi|254780300|r 92 ADTIATLNALRPNIIVIRHPYSGAVNSL---MHKIK-GPSIINAGDGTHEHP--SQALLDAFAIRHFKGKISNLHI-AIC 164 (316) Q Consensus 92 ~Dta~vls~~~~d~iv~R~~~~~~~~~~---a~~~s-~ppVINag~~~~~HP--~Q~LaDl~Ti~e~~g~l~~l~i-a~v 164 (316) .|....+. .+|++++-.++......+ ..+.. ..++|++.-|....| .+.+.+++ .+.++ .++ ++. T Consensus 82 ~~l~~~~~--~~d~iiiavPS~~~~~~~~~~~~~l~~~~~iv~~~KG~~~~~~~~~~~se~i--~~~~~----~~~~~ls 153 (354) T 1x0v_A 82 PDVVQAAE--DADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVI--GERLG----IPMSVLM 153 (354) T ss_dssp SSHHHHHT--TCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHH--HHHHT----CCEEEEE T ss_pred CCHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEHHHHH--HHHCC----CCEEEEE T ss_conf 67998871--7657765350599999998877764225416774100101798641399988--88739----9769985 Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEECCCC Q ss_conf 55443301334466420134205532775 Q gi|254780300|r 165 GDILHSRVARSDIMLLNTMGARIRVIAPI 193 (316) Q Consensus 165 GD~~~~~v~~S~~~~~~~~g~~v~~~~P~ 193 (316) |+. .+. +.+...+..+++++.. T Consensus 154 GPs----~A~---Eva~g~pta~~ias~~ 175 (354) T 1x0v_A 154 GAN----IAS---EVADEKFCETTIGCKD 175 (354) T ss_dssp CSC----CHH---HHHTTCCEEEEEECSS T ss_pred CCC----CHH---HHHCCCCCCCCCCCCC T ss_conf 787----489---9821888655556799 No 146 >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, NAD dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A Probab=39.66 E-value=17 Score=15.43 Aligned_cols=134 Identities=8% Similarity=0.091 Sum_probs=59.8 Q ss_pred CCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCC---CCCCCCEEEEEEECCCC-HHHHHHHHHHHHHCCCCCCCCCCCCCC Q ss_conf 78223899999999999999996442048775---21289769999607873-378999979876135211123333210 Q gi|254780300|r 10 VTVKDLSMQDVNYLLDRANEYFQKKSHFNPST---TRLQGLTQINLFLETST-RTQTSFEVAGKLLGVHVININTKNSAM 85 (316) Q Consensus 10 L~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~---~~L~gk~~~~lF~kpSt-RTR~SFe~A~~~LGg~~i~l~~~~s~~ 85 (316) |.+-|.+++-+....+++..+.....+..... ..|+|..++.+=..++. ..|..=+..-.+.|. +...+..+ T Consensus 34 i~L~DId~~rl~~~~~l~~~~~~~~~~v~~t~d~~~al~gAD~Vv~t~~vg~~~~~~~d~~i~~~~gi----~~~~t~g~ 109 (417) T 1up7_A 34 VIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGL----IGQETTGV 109 (417) T ss_dssp EEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCTTHHHHHHHHHHGGGGGTC----CCCSSSTH T ss_pred EEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCE----EEEECCCC T ss_conf 99985998999999999986640697299977889984799999994235899845488640764785----44323451 Q ss_pred C-------CCCCCCCHHHHHHHHCCCCEEEECCCCCH--HHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH Q ss_conf 1-------33342247999874136714652032100--5542001234211112345663122332222222 Q gi|254780300|r 86 K-------KGENIADTIATLNALRPNIIVIRHPYSGA--VNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAI 149 (316) Q Consensus 86 ~-------kgEs~~Dta~vls~~~~d~iv~R~~~~~~--~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti 149 (316) + .=--+.|.++.+.. .+|++++=....-. ...+.+.+..|.++..|.+.. +-+..++.++-. T Consensus 110 gG~~~alRtiPv~~~i~~~i~~-~P~A~lin~tNP~~i~t~a~~~~~~~~k~~glc~~~~-~~~~~la~~l~~ 180 (417) T 1up7_A 110 GGFSAALRAFPIVEEYVDTVRK-TSNATIVNFTNPSGHITEFVRNYLEYEKFIGLCNVPI-NFIREIAEMFSA 180 (417) T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-TTCCEEEECSSSHHHHHHHHHHTTCCSSEEECCSHHH-HHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHCCCCCEEEECCCHH-HHHHHHHHHHCC T ss_conf 0899987515899999999865-9981999925918999999997388886786289678-899999998589 No 147 >1hr8_O COX4, cytochrome C oxidase polypeptide IV; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.70A {Saccharomyces cerevisiae} Probab=37.44 E-value=6 Score=18.35 Aligned_cols=13 Identities=38% Similarity=0.416 Sum_probs=10.7 Q ss_pred EEECCCCHHHHHH Q ss_conf 9607873378999 Q gi|254780300|r 52 LFLETSTRTQTSF 64 (316) Q Consensus 52 lF~kpStRTR~SF 64 (316) -||||.|||-+|- T Consensus 8 rffkpatrtlcss 20 (26) T 1hr8_O 8 RFFKPATRTLCSS 20 (26) T ss_pred HHCCCHHHHHHCC T ss_conf 2038145523100 No 148 >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, PSI-2, protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Probab=36.71 E-value=19 Score=15.14 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=5.2 Q ss_pred CCEEEECCCCCC Q ss_conf 420553277532 Q gi|254780300|r 184 GARIRVIAPITL 195 (316) Q Consensus 184 g~~v~~~~P~~~ 195 (316) |++.+++.|..+ T Consensus 162 ~~~~tivRP~~l 173 (236) T 3e8x_A 162 SLDYTIVRPGPL 173 (236) T ss_dssp SSEEEEEEECSE T ss_pred CCCEEEEECCCC T ss_conf 999899978712 No 149 >3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes} Probab=36.47 E-value=17 Score=15.36 Aligned_cols=17 Identities=24% Similarity=0.190 Sum_probs=10.1 Q ss_pred HHHHHHHHHCCCCCCCC Q ss_conf 99979876135211123 Q gi|254780300|r 63 SFEVAGKLLGVHVININ 79 (316) Q Consensus 63 SFe~A~~~LGg~~i~l~ 79 (316) .|..+..+||..+..++ T Consensus 48 ~~~~~f~~lG~~v~~ld 64 (206) T 3l4e_A 48 AGKKALESLGLLVEELD 64 (206) T ss_dssp HHHHHHHHTTCEEEECC T ss_pred HHHHHHHHCCCEEEEEE T ss_conf 99999998799789985 No 150 >2ldx_A APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.96A {Mus musculus} SCOP: c.2.1.5 d.162.1.1 Probab=34.60 E-value=15 Score=15.85 Aligned_cols=79 Identities=16% Similarity=0.100 Sum_probs=34.3 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCC Q ss_conf 37899997987613521112333321013334--2247999874136714652032100554200123421111234566 Q gi|254780300|r 59 RTQTSFEVAGKLLGVHVININTKNSAMKKGEN--IADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTH 136 (316) Q Consensus 59 RTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs--~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~ 136 (316) =.-++|..+...++....-+|.... .-+|+. +.|.+ .+.....++.... ..+ .+.+.+. ||-||- + T Consensus 31 G~~~a~~l~~~~~~~el~L~Di~~~-~~~g~a~DL~~~~----~~~~~~~~~~~~~---~~~-~~~aDiv-vi~ag~-p- 98 (331) T 2ldx_A 31 GMACAISILLKGLADELALVDADTD-KLRGEALDLQHGS----LFLSTPKIVFGKD---YNV-SANSKLV-IITAGA-R- 98 (331) T ss_dssp HHHHHHHHHTTTSCSEEEEECSCHH-HHHHHHHHHHHTT----TTCSCCEEEEESS---GGG-GTTEEEE-EECCSC-C- T ss_pred HHHHHHHHHHCCCCCEEEEECCCCC-HHHHHHHHHHCCC----CCCCCCEEEECCC---HHH-HCCCCEE-EECCCC-C- T ss_conf 9999999984699887999748997-5788999987665----4469971881798---788-2899899-973788-8- Q ss_pred CCHHHHHHHHHHH Q ss_conf 3122332222222 Q gi|254780300|r 137 EHPSQALLDAFAI 149 (316) Q Consensus 137 ~HP~Q~LaDl~Ti 149 (316) .-|-+.=.|++.. T Consensus 99 r~pg~~R~dll~~ 111 (331) T 2ldx_A 99 MVSGQTRLDLLQR 111 (331) T ss_dssp CCTTTCSSCTTHH T ss_pred CCCCCCHHHHHHH T ss_conf 8999987788876 No 151 >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} Probab=34.59 E-value=18 Score=15.23 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=58.3 Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCC----CCCC----CCCCHHHHHHHHCCCCEEEECCCCCHH---HHHHCCCCCCCCCC Q ss_conf 999979876135211123333210----1333----422479998741367146520321005---54200123421111 Q gi|254780300|r 62 TSFEVAGKLLGVHVININTKNSAM----KKGE----NIADTIATLNALRPNIIVIRHPYSGAV---NSLMHKIKGPSIIN 130 (316) Q Consensus 62 ~SFe~A~~~LGg~~i~l~~~~s~~----~kgE----s~~Dta~vls~~~~d~iv~R~~~~~~~---~~~a~~~s~ppVIN 130 (316) .|+..+..+-|..+..+|.+.... ..|- .+.++..-...- +|+|++=+|-.... .++....+.-.|+- T Consensus 21 ~Sla~aL~~~g~~V~g~D~~~~~~~~A~~~g~~~~~~~~~~l~~a~~~-~DLIIlavPv~~i~~vl~~l~~~~~~~ivTD 99 (341) T 3ktd_A 21 GSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAE-DALIVLAVPMTAIDSLLDAVHTHAPNNGFTD 99 (341) T ss_dssp HHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHT-TCEEEECSCHHHHHHHHHHHHHHCTTCCEEE T ss_pred HHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCHHHHCCC-CCEEEECCCHHHHHHHHHHHHCCCCCCEEEC T ss_conf 999999987879899998999999999985998545100568774046-8689966973666665676512466433411 Q ss_pred CCCCCCCCHHHHHHHHHHHH------------CCCC-------CCCCCCEEECCCCCCC--CHH-------HHHHHHHHC Q ss_conf 23456631223322222220------------1222-------1000100103554433--013-------344664201 Q gi|254780300|r 131 AGDGTHEHPSQALLDAFAIR------------HFKG-------KISNLHIAICGDILHS--RVA-------RSDIMLLNT 182 (316) Q Consensus 131 ag~~~~~HP~Q~LaDl~Ti~------------e~~g-------~l~~l~ia~vGD~~~~--~v~-------~S~~~~~~~ 182 (316) .|+ ....+++.+... ... |..| -++|..|..+.+-..+ .+. .....+... T Consensus 100 VgS-vK~~i~~~~~~~-~~~~~fVg~HPMaG~E~sG~~aa~~~LF~g~~~ilt~~~~~~~~~~~~~~~~~~~~~~~l~~~ 177 (341) T 3ktd_A 100 VVS-VKTAVYDAVKAR-NMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKDVVQMALA 177 (341) T ss_dssp CCS-CSHHHHHHHHHT-TCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHHHHHHHHH T ss_pred HHH-HHHHHHHHHHHH-CCCCCEECCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 345-528999998864-235641014643356666743012335057459971798776778888999999999998750 Q ss_pred CCCEEEECCCCCC Q ss_conf 3420553277532 Q gi|254780300|r 183 MGARIRVIAPITL 195 (316) Q Consensus 183 ~g~~v~~~~P~~~ 195 (316) +|+++....|++. T Consensus 178 ~Ga~v~~m~~~~H 190 (341) T 3ktd_A 178 VGAEVVPSRVGPH 190 (341) T ss_dssp TTCEEEECCHHHH T ss_pred CCCEEEEECHHHH T ss_conf 8958999457899 No 152 >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center for structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} Probab=34.06 E-value=21 Score=14.86 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=5.6 Q ss_pred HHHHHHHHHHHCCCC Q ss_conf 899997987613521 Q gi|254780300|r 61 QTSFEVAGKLLGVHV 75 (316) Q Consensus 61 R~SFe~A~~~LGg~~ 75 (316) +...-.++.+.|-|+ T Consensus 80 H~~~~~~al~~gkhv 94 (352) T 3kux_A 80 HFPLAQSALAAGKHV 94 (352) T ss_dssp HHHHHHHHHHTTCEE T ss_pred HHHHHHHHHHCCCCE T ss_conf 898899999859977 No 153 >2g04_A Probable fatty-acid-COA racemase FAR; isomerase; 2.70A {Mycobacterium tuberculosis H37RV} Probab=33.71 E-value=21 Score=14.83 Aligned_cols=32 Identities=9% Similarity=-0.013 Sum_probs=15.1 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCEEECCCCCC Q ss_conf 12233222222201222100010010355443 Q gi|254780300|r 138 HPSQALLDAFAIRHFKGKISNLHIAICGDILH 169 (316) Q Consensus 138 HP~Q~LaDl~Ti~e~~g~l~~l~ia~vGD~~~ 169 (316) .=.|+++-++.+.-.-+.-.-....+++|... T Consensus 130 ~~~~A~sG~~~~~g~~~~~P~~~~~~~~d~~~ 161 (359) T 2g04_A 130 INYLSQTGALAAFGYADRPPMPPLNLVADFGG 161 (359) T ss_dssp HHHHHHHTSGGGCSCSSSCCCCCTTCCCCCCT T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHH T ss_conf 55435410043326899998678602588889 No 154 >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, MFE-1, fatty acid beta oxidation, oxidoreductase; 1.90A {Rattus norvegicus} Probab=32.61 E-value=22 Score=14.71 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=11.1 Q ss_pred HHHHHHC-CCCEEEECCCCCHHHHHHC Q ss_conf 9987413-6714652032100554200 Q gi|254780300|r 96 ATLNALR-PNIIVIRHPYSGAVNSLMH 121 (316) Q Consensus 96 ~vls~~~-~d~iv~R~~~~~~~~~~a~ 121 (316) .-+..+. .++|+.-+.+.-.+.++++ T Consensus 134 ~~le~~~~~~~IlaSNTSsl~i~~la~ 160 (463) T 1zcj_A 134 AELSALCKPGAFLCTNTSALNVDDIAS 160 (463) T ss_dssp HHHHHHSCTTCEEEECCSSSCHHHHHT T ss_pred HHHHHHHCCCCEEEECCCCCCHHHHHH T ss_conf 999977278764640367677999986 No 155 >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.80A {Bacillus halodurans} Probab=32.60 E-value=22 Score=14.71 Aligned_cols=35 Identities=11% Similarity=0.009 Sum_probs=29.0 Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 01001035544330133446642013420553277532 Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316) Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316) ..++.++|- +.|+..+..++..+|++++++.|..- T Consensus 199 ~~~L~I~Ga---Ghva~~la~la~~lgf~V~v~D~r~~ 233 (362) T 3on5_A 199 KERLIIFGA---GPDVPPLVTFASNVGFYTVVTDWRPN 233 (362) T ss_dssp CEEEEEECC---STTHHHHHHHHHHHTEEEEEEESCGG T ss_pred CCEEEEEEC---CHHHHHHHHHHHHCCCEEEEECCCHH T ss_conf 855999706---65089999999878978999748634 No 156 >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, PSI-2, protein structure initiative; HET: MSE; 2.08A {Ruegeria pomeroyi} Probab=32.29 E-value=15 Score=15.69 Aligned_cols=64 Identities=14% Similarity=0.167 Sum_probs=37.3 Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHCCC-CEEEECCCCCCCCCCCCC-------CCCCCCCCHHHCCCCCCEEEEE Q ss_conf 010010355443301334466420134-205532775322211212-------3433005845603686221000 Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLNTMG-ARIRVIAPITLLPKDISN-------MGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~~~g-~~v~~~~P~~~~~~~~~~-------~~~~~~~d~~ea~~~aDvv~~~ 224 (316) ..||+.+|= +++.+.....+...| .+++++....-..+.... ..+.-..++.+.+++.|+|+.. T Consensus 5 ~~kI~ViGa---G~vG~~va~~L~~~~~~~v~~~dr~~~~~~~~~~~~~~~~~~d~~d~~~l~~~l~~~DvVi~~ 76 (118) T 3ic5_A 5 RWNICVVGA---GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISA 76 (118) T ss_dssp CEEEEEECC---SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEEC T ss_pred CCCEEEECC---CHHHHHHHHHHHHCCCCCEEEECCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEC T ss_conf 078899867---999999999998789984786126566641000122221112448999999998599899983 No 157 >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens AM1} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* Probab=32.02 E-value=21 Score=14.80 Aligned_cols=105 Identities=9% Similarity=0.042 Sum_probs=57.2 Q ss_pred HHHCCCCCCCC-CCCCCCCCCCHHHHHHHHHHH-HCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC Q ss_conf 42001234211-112345663122332222222-0122210001001035544330133446642013420553277532 Q gi|254780300|r 118 SLMHKIKGPSI-INAGDGTHEHPSQALLDAFAI-RHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL 195 (316) Q Consensus 118 ~~a~~~s~ppV-INag~~~~~HP~Q~LaDl~Ti-~e~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~ 195 (316) +.+++.-+||+ ++...++..-=|-+-+=+.-+ ++..++++|.++...|- .+-+.......++.-|++|.++.=..- T Consensus 77 ~~~~~~~~~~~~vsv~~d~~g~~ttaaa~v~~~~~~~~~~l~gK~~lVtGa--tggiG~a~A~~la~~Ga~V~i~~R~~e 154 (287) T 1lu9_A 77 EAVKKRFFGPFRVSCMLDSNGSNTTAAAGVALVVKAAGGSVKGKKAVVLAG--TGPVGMRSAALLAGEGAEVVLCGRKLD 154 (287) T ss_dssp HHHHHHCBTTBCCEEEECSTTHHHHHHHHHHHHHHHTTSCCTTCEEEEETC--SSHHHHHHHHHHHHTTCEEEEEESSHH T ss_pred HHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECC--CHHHHHHHHHHHHHCCCEEEEEECCHH T ss_conf 999983689706886407997445899999999996499989998999858--769999999999986998999959999 Q ss_pred C----CCCC--------CCCCCCCCCCHHHCCCCCCEEEEE Q ss_conf 2----2112--------123433005845603686221000 Q gi|254780300|r 196 L----PKDI--------SNMGVEVFHDMQKGLKNVDVIMIL 224 (316) Q Consensus 196 ~----~~~~--------~~~~~~~~~d~~ea~~~aDvv~~~ 224 (316) . .+.. ....+....+..+++.++|+++-. T Consensus 155 ~~~~~a~~l~~~~~~~~~~~D~s~~~~~~~~~~~~DIlinn 195 (287) T 1lu9_A 155 KAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTA 195 (287) T ss_dssp HHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEEC T ss_pred HHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHCCCCEEEEC T ss_conf 99999886540488489998437478999985899899989 No 158 >3db2_A Putative NADPH-dependent oxidoreductase; ZP_01370612.1, structural genomics, joint center for structural genomics, JCSG; 1.70A {Desulfitobacterium hafniense dcb-2} Probab=31.95 E-value=22 Score=14.67 Aligned_cols=25 Identities=8% Similarity=0.137 Sum_probs=10.9 Q ss_pred EEECCCCHHHHHHHHHHHHHCCCCC Q ss_conf 9607873378999979876135211 Q gi|254780300|r 52 LFLETSTRTQTSFEVAGKLLGVHVI 76 (316) Q Consensus 52 lF~kpStRTR~SFe~A~~~LGg~~i 76 (316) ++--..+-++.....++.+-|-|++ T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~V~ 94 (354) T 3db2_A 70 VIITVPNDKHAEVIEQCARSGKHIY 94 (354) T ss_dssp EEECSCTTSHHHHHHHHHHTTCEEE T ss_pred EEECCCHHHHHHHHHHHHHCCCEEE T ss_conf 9987977888888999997899799 No 159 >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI, protein structure initiative; 2.85A {Plasmodium falciparum 3D7} Probab=31.20 E-value=23 Score=14.56 Aligned_cols=13 Identities=8% Similarity=0.255 Sum_probs=8.5 Q ss_pred CCCEEEECCCCCH Q ss_conf 6714652032100 Q gi|254780300|r 103 PNIIVIRHPYSGA 115 (316) Q Consensus 103 ~d~iv~R~~~~~~ 115 (316) +|+|++-.|+... T Consensus 104 ad~IiiavPS~~~ 116 (375) T 1yj8_A 104 ADLLIFIVPCQYL 116 (375) T ss_dssp CSEEEECCCHHHH T ss_pred CCEEEEECCHHHH T ss_conf 9889994670899 No 160 >2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A Probab=30.50 E-value=24 Score=14.49 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=35.5 Q ss_pred EEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCC Q ss_conf 699996078---73378999979876135211123333210133342247999874136714652032100554200123 Q gi|254780300|r 48 TQINLFLET---STRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIK 124 (316) Q Consensus 48 ~~~~lF~kp---StRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s 124 (316) .++.++.+| +.+..+ ...+.+.|..+.. +... -...+...+.+..+..+.+|++++-....=...++..... T Consensus 47 ~i~~V~T~pdk~~~~~~v--~~~a~~~~ipv~~--~~~~-~~~~~~~~e~~~~l~~~~~Dl~v~~~~~~iip~~il~~~~ 121 (329) T 2bw0_A 47 EVVGVFTVPDKDGKADPL--GLEAEKDGVPVFK--YSRW-RAKGQALPDVVAKYQALGAELNVLPFCSQFIPMEIISAPR 121 (329) T ss_dssp EEEEEEECCCCSSCCCHH--HHHHHHHTCCEEE--CSCC-EETTEECHHHHHHHHTTCCSEEEESSCSSCCCHHHHTCST T ss_pred CEEEEEECCCCCCCCCHH--HHHHHHHCCCEEC--CCCC-CCCCCCCHHHHHHHHHHCCCEEEEECCHHHCCHHHHHCCC T ss_conf 789999089988898969--9999981998864--4336-7612048999999996296999990612437798863478 Q ss_pred CCCCCC Q ss_conf 421111 Q gi|254780300|r 125 GPSIIN 130 (316) Q Consensus 125 ~ppVIN 130 (316) .- +|| T Consensus 122 ~g-~iN 126 (329) T 2bw0_A 122 HG-SII 126 (329) T ss_dssp TC-EEE T ss_pred CC-EEE T ss_conf 98-899 No 161 >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Probab=29.73 E-value=24 Score=14.40 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=3.7 Q ss_pred CHHHHHHHHH Q ss_conf 1223322222 Q gi|254780300|r 138 HPSQALLDAF 147 (316) Q Consensus 138 HP~Q~LaDl~ 147 (316) .|-|.-.|++ T Consensus 86 k~g~~R~dll 95 (321) T 3p7m_A 86 KPGMSRDDLL 95 (321) T ss_dssp CTTCCHHHHH T ss_pred CCCCCHHHHH T ss_conf 9999889999 No 162 >1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3 Probab=29.09 E-value=24 Score=14.51 Aligned_cols=12 Identities=17% Similarity=0.157 Sum_probs=4.4 Q ss_pred HHHHHHHHCCCC Q ss_conf 997987613521 Q gi|254780300|r 64 FEVAGKLLGVHV 75 (316) Q Consensus 64 Fe~A~~~LGg~~ 75 (316) ....-.++|.++ T Consensus 28 l~~~L~~~G~~v 39 (196) T 1qo0_D 28 LVLQLIRIGCSV 39 (196) T ss_dssp HHHHHHHHTCEE T ss_pred HHHHHHHCCCEE T ss_conf 999999869988 No 163 >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Probab=29.00 E-value=25 Score=14.32 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=32.2 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 21000100103554433013344664201342055327753 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPIT 194 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~ 194 (316) .+++|.+++.-| -++|.......+...|+++..+.... T Consensus 169 ~~l~g~~vaIQG---fGnVG~~~a~~L~~~Gakvv~~d~~~ 206 (364) T 1leh_A 169 DSLEGLAVSVQG---LGNVAKALCKKLNTEGAKLVVTDVNK 206 (364) T ss_dssp CCCTTCEEEEEC---CSHHHHHHHHHHHHTTCEEEEECSCH T ss_pred CCCCCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEECCCH T ss_conf 886788899985---67168999999997799999954887 No 164 >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; YP_263340.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} Probab=27.54 E-value=27 Score=14.16 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=4.4 Q ss_pred HCCCCEEEEC Q ss_conf 1367146520 Q gi|254780300|r 101 LRPNIIVIRH 110 (316) Q Consensus 101 ~~~d~iv~R~ 110 (316) +.+|+.++-+ T Consensus 215 ~~p~iaviTN 224 (524) T 3hn7_A 215 YRPRTAILNN 224 (524) T ss_dssp CCCSEEEECC T ss_pred CCCCEEEEEC T ss_conf 4676899974 No 165 >2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} Probab=27.38 E-value=25 Score=14.34 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=29.2 Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCC Q ss_conf 224799987413671465203210055420012342111123 Q gi|254780300|r 91 IADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAG 132 (316) Q Consensus 91 ~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag 132 (316) +-+.++-+...++|++++=+..+..+..+-+..++| ||+.+ T Consensus 64 l~~~~~~le~~g~DaivIaC~t~~~l~~~r~~~~iP-Vig~~ 104 (228) T 2eq5_A 64 IIRLAKEFEREGVDAIIISCAADPAVEKVRKLLSIP-VIGAG 104 (228) T ss_dssp HHHHHHHHHHTTCSEEEECSTTCTTHHHHHHHCSSC-EEEHH T ss_pred HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCC-EECCH T ss_conf 999999998779989999068759999999865998-55631 No 166 >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} Probab=27.22 E-value=18 Score=15.23 Aligned_cols=53 Identities=9% Similarity=0.229 Sum_probs=22.5 Q ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 28976999960787337899997987613521112333321013334224799 Q gi|254780300|r 44 LQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIA 96 (316) Q Consensus 44 L~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgEs~~Dta~ 96 (316) |....+=.++--....++.....++.+-|-|++.=-|-...+...+.+.+.++ T Consensus 60 l~~~~vD~V~i~tp~~~H~~~~~~al~~gkhV~~EKPla~~~~ea~~l~~~a~ 112 (387) T 3moi_A 60 MQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVE 112 (387) T ss_dssp HHHSCCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHH T ss_pred HCCCCCCEEEECCCCHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHHHHHHHH T ss_conf 65999988999089678999999998618956537888799999999999999 No 167 >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Probab=26.95 E-value=27 Score=14.09 Aligned_cols=47 Identities=21% Similarity=0.171 Sum_probs=33.6 Q ss_pred HHHHHHHHHC----CCCCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECC Q ss_conf 3222222201----2221000100103554433013344664201342055327 Q gi|254780300|r 142 ALLDAFAIRH----FKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIA 191 (316) Q Consensus 142 ~LaDl~Ti~e----~~g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~ 191 (316) +..-++.+.+ ...+++|.+++.-| -++|.......+...|+++.-++ T Consensus 201 g~Gv~~~~~~~~~~~~~~l~g~~vaIQG---~GnVG~~~a~~L~~~Gakvvavs 251 (424) T 3k92_A 201 AQGVTICIEEAVKKKGIKLQNARIIIQG---FGNAGSFLAKFMHDAGAKVIGIS 251 (424) T ss_dssp HHHHHHHHHHHHHHTTCCGGGCEEEEEC---CSHHHHHHHHHHHHHTCEEEEEE T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEE---CCCHHHHHHHHHHHCCCEEEEEE T ss_conf 0678899999887459986887799971---57268999999987699799998 No 168 >2vjq_A Formyl-coenzyme A transferase; cytoplasm, class III COA transferase; HET: EPE; 1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A* 2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A* 2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A* Probab=26.49 E-value=28 Score=14.04 Aligned_cols=12 Identities=8% Similarity=0.329 Sum_probs=5.0 Q ss_pred HHHHHHHCCCCEE Q ss_conf 9998741367146 Q gi|254780300|r 95 IATLNALRPNIIV 107 (316) Q Consensus 95 a~vls~~~~d~iv 107 (316) ++-|-.- +|+++ T Consensus 83 ~~~Lv~~-aDvvi 94 (428) T 2vjq_A 83 LEQMIKK-ADVMV 94 (428) T ss_dssp HHHHHHH-CSEEE T ss_pred HHHHHHH-CCEEE T ss_conf 9999854-88689 No 169 >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} Probab=26.16 E-value=28 Score=14.00 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=5.7 Q ss_pred CCCCEEEECCC Q ss_conf 36714652032 Q gi|254780300|r 102 RPNIIVIRHPY 112 (316) Q Consensus 102 ~~d~iv~R~~~ 112 (316) .+|+++-=++. T Consensus 81 ~~DvVidcTg~ 91 (343) T 2yyy_A 81 DADIVVDGAPK 91 (343) T ss_dssp GCSEEEECCCT T ss_pred CCCEEEECCCC T ss_conf 69999991665 No 170 >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* Probab=25.80 E-value=29 Score=13.96 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=24.4 Q ss_pred HHHHHHHHCCCCCCCCCCCC---CCCCC-C----CCCC--HHHHHHHHCCCCEEE Q ss_conf 99798761352111233332---10133-3----4224--799987413671465 Q gi|254780300|r 64 FEVAGKLLGVHVININTKNS---AMKKG-E----NIAD--TIATLNALRPNIIVI 108 (316) Q Consensus 64 Fe~A~~~LGg~~i~l~~~~s---~~~kg-E----s~~D--ta~vls~~~~d~iv~ 108 (316) +..|+++||..++.+++++. ++... + +..| +...+..- +|+|.. T Consensus 39 l~~aA~~LGi~v~vld~~~~pa~~va~ad~~i~~~~~D~~al~~~a~~-~DvIT~ 92 (403) T 3k5i_A 39 LVESANRLNIQVNVLDADNSPAKQISAHDGHVTGSFKEREAVRQLAKT-CDVVTA 92 (403) T ss_dssp HHHHHHHHTCEEEEEESTTCTTGGGCCSSCCEESCTTCHHHHHHHHTT-CSEEEE T ss_pred HHHHHHHCCCEEEEEECCCCCHHHCCCCCEEEECCCCCHHHHHHHHHC-CCEEEE T ss_conf 999999789989999689998665100520697788999999999861-999998 No 171 >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Probab=25.50 E-value=29 Score=13.93 Aligned_cols=22 Identities=9% Similarity=0.022 Sum_probs=9.3 Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCE Q ss_conf 122332222222012221000100 Q gi|254780300|r 138 HPSQALLDAFAIRHFKGKISNLHI 161 (316) Q Consensus 138 HP~Q~LaDl~Ti~e~~g~l~~l~i 161 (316) -|+-.++-++ ++..|...+..| T Consensus 130 NPvd~~~~~~--~k~~g~~~~~vi 151 (333) T 5mdh_A 130 NPANTNCLTA--SKSAPSIPKENF 151 (333) T ss_dssp SSHHHHHHHH--HHTCTTSCGGGE T ss_pred CCHHHHHHHH--HHHCCCCCHHEE T ss_conf 9677999999--996699961258 No 172 >6ldh_A M4 APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.00A {Squalus acanthias} SCOP: c.2.1.5 d.162.1.1 PDB: 8ldh_A* 1ldm_A* 9ldt_A* 9ldb_A* 1i10_A* 3ldh_A* 3h3f_A* 1t2f_A* 1i0z_A* 5ldh_A* 1v6a_A* Probab=24.65 E-value=30 Score=13.82 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=11.7 Q ss_pred HHHHHHHHHHHHHCCCCCCCCC Q ss_conf 3789999798761352111233 Q gi|254780300|r 59 RTQTSFEVAGKLLGVHVININT 80 (316) Q Consensus 59 RTR~SFe~A~~~LGg~~i~l~~ 80 (316) =.-++|..+...|+.+..-+|. T Consensus 33 G~~~a~~l~~~~l~~el~L~D~ 54 (330) T 6ldh_A 33 GMACAISILMKDLADEVALVDV 54 (330) T ss_dssp HHHHHHHHHTTTCCSEEEEECS T ss_pred HHHHHHHHHHCCCCCEEEEEEC T ss_conf 9999999982799887999918 No 173 >3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus} Probab=24.12 E-value=31 Score=13.76 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=48.9 Q ss_pred CCCCHHHHHHHHC--CCCEEEECCCCC---HHHHHHCCCCCC--CCCCCCC--CCCCCHH----HHHHH----HHHHHC- Q ss_conf 4224799987413--671465203210---055420012342--1111234--5663122----33222----222201- Q gi|254780300|r 90 NIADTIATLNALR--PNIIVIRHPYSG---AVNSLMHKIKGP--SIINAGD--GTHEHPS----QALLD----AFAIRH- 151 (316) Q Consensus 90 s~~Dta~vls~~~--~d~iv~R~~~~~---~~~~~a~~~s~p--pVINag~--~~~~HP~----Q~LaD----l~Ti~e- 151 (316) +....++.|.+.+ +|++++|....= ...-.+-...+| .||++-| +-++=|. |.|.+ .+-+.. T Consensus 192 PTQhSVk~Lr~~GIqPDiivcRs~~~l~~~~k~KIslfc~V~~~~Vi~~~Dv~sIY~VPl~l~~qgl~~~i~~~L~L~~~ 271 (535) T 3nva_A 192 PLQHSVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDR 271 (535) T ss_dssp HHHHHHHHHHHHTCCCSEEEEEESSCCCHHHHHHHHHHTTCCGGGEEEEECCSCGGGHHHHHHHHTHHHHHHHHTTCCCC T ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHHHCCCCC T ss_conf 02899999997589875677604561238999988513577745168627998523404898877879999987099988 Q ss_pred ------------CCCC---CCCCCEEECCCCCC-----CCHHHHHHHHHHCCCCEEEE Q ss_conf ------------2221---00010010355443-----30133446642013420553 Q gi|254780300|r 152 ------------FKGK---ISNLHIAICGDILH-----SRVARSDIMLLNTMGARIRV 189 (316) Q Consensus 152 ------------~~g~---l~~l~ia~vGD~~~-----~~v~~S~~~~~~~~g~~v~~ 189 (316) +... -+.++|++||+... --+..++..+....+.++.+ T Consensus 272 ~~~~~~W~~~~~~~~~~~~~~~V~IaiVGKY~~l~DAY~Si~EAL~HAg~~~~~kv~I 329 (535) T 3nva_A 272 QVDLTDWISFVNNIKGINSKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKL 329 (535) T ss_dssp CCCCHHHHHHHHHHHTTTCCCEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEE T ss_pred CCCHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCEEEE T ss_conf 8546889999866412785660557898520033136766468998656765132369 No 174 >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} Probab=24.07 E-value=31 Score=13.75 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=11.0 Q ss_pred CCCHHHHHHHHHHHHHCCCCC Q ss_conf 873378999979876135211 Q gi|254780300|r 56 TSTRTQTSFEVAGKLLGVHVI 76 (316) Q Consensus 56 pStRTR~SFe~A~~~LGg~~i 76 (316) ..+-++.....++.+-|-|++ T Consensus 75 tp~~~H~~~~~~al~~gkhV~ 95 (364) T 3e82_A 75 SPNATHAPLARLALNAGKHVV 95 (364) T ss_dssp SCGGGHHHHHHHHHHTTCEEE T ss_pred CCHHHHHHHHHHHHHCCCCCH T ss_conf 877886788889986499541 No 175 >2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP complex, transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A Probab=24.02 E-value=27 Score=14.13 Aligned_cols=88 Identities=11% Similarity=0.111 Sum_probs=37.7 Q ss_pred CCCCCCEEEEEEECCCC---HHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCCCCH Q ss_conf 21289769999607873---37899997987613---5211123333210133342247999874136714652032100 Q gi|254780300|r 42 TRLQGLTQINLFLETST---RTQTSFEVAGKLLG---VHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGA 115 (316) Q Consensus 42 ~~L~gk~~~~lF~kpSt---RTR~SFe~A~~~LG---g~~i~l~~~~s~~~kgEs~~Dta~vls~~~~d~iv~R~~~~~~ 115 (316) ..+--|. ++++.+|-- |..-.++.....|. ..+..+..+ +.....+.++.+..-..|+||+--. .|. T Consensus 20 ~~~m~kr-~~vI~NP~SG~g~~~~~~~~i~~~l~~~g~~~~i~~T~-----~~g~a~~~a~~~~~~~~d~IVv~GG-DGT 92 (337) T 2qv7_A 20 SHMMRKR-ARIIYNPTSGKEQFKRELPDALIKLEKAGYETSAYATE-----KIGDATLEAERAMHENYDVLIAAGG-DGT 92 (337) T ss_dssp CCSCCEE-EEEEECTTSTTSCHHHHHHHHHHHHHHTTEEEEEEECC-----STTHHHHHHHHHTTTTCSEEEEEEC-HHH T ss_pred CCCCCCE-EEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECC-----CCCHHHHHHHHHHHCCCCEEEEECC-CHH T ss_conf 5456635-99999988898757999999999999879969999828-----9226999999987779999999906-569 Q ss_pred HHHH----HCCCCCCC--CCCCCCCCC Q ss_conf 5542----00123421--111234566 Q gi|254780300|r 116 VNSL----MHKIKGPS--IINAGDGTH 136 (316) Q Consensus 116 ~~~~----a~~~s~pp--VINag~~~~ 136 (316) +.+. +.....|| ||.+|+++. T Consensus 93 v~ev~~gl~~~~~~~plgiiP~GTgN~ 119 (337) T 2qv7_A 93 LNEVVNGIAEKPNRPKLGVIPMGTVND 119 (337) T ss_dssp HHHHHHHHTTCSSCCEEEEEECSSCCH T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCC T ss_conf 999999998616796189954999981 No 176 >2eez_A Alanine dehydrogenase; TTHA0216, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.71A {Thermus thermophilus HB8} Probab=23.83 E-value=20 Score=14.99 Aligned_cols=95 Identities=12% Similarity=0.164 Sum_probs=49.7 Q ss_pred CCCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC----CCCCCC---CCCCHHHCCCCCCEEEEEEE Q ss_conf 21000100103554433013344664201342055327753222112----123433---00584560368622100011 Q gi|254780300|r 154 GKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI----SNMGVE---VFHDMQKGLKNVDVIMILRM 226 (316) Q Consensus 154 g~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~----~~~~~~---~~~d~~ea~~~aDvv~~~~~ 226 (316) |.+...++..+|- +++...-+..+..+|+.+...--.....+.. ...... ......+.++.+|+|++.-. T Consensus 162 ~~v~p~~v~v~Ga---Gvagl~Ai~ta~~lGa~v~~~dv~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~DivI~ta~ 238 (369) T 2eez_A 162 PGVAPASVVILGG---GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVL 238 (369) T ss_dssp TBBCCCEEEEECC---SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC T ss_pred CCCCCCEEEEECC---CEECHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCEEEEEEEE T ss_conf 8877746999579---6003889999841797699814218899887664055123200138788764212047875233 Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEE Q ss_conf 3312333444455542023575889998379985995 Q gi|254780300|r 227 QQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVM 263 (316) Q Consensus 227 ~~e~~~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~m 263 (316) ..-+. .+--|+++.++..++.+++. T Consensus 239 ipg~~------------~p~lit~~~v~~mk~gsVIv 263 (369) T 2eez_A 239 VPGAK------------APKLVTRDMLSLMKEGAVIV 263 (369) T ss_dssp -------------------CCSCHHHHTTSCTTCEEE T ss_pred CCCCC------------CCHHHHHHHHHCCCCCCEEE T ss_conf 28988------------84121366785068863899 No 177 >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} Probab=23.43 E-value=32 Score=13.67 Aligned_cols=139 Identities=13% Similarity=0.121 Sum_probs=74.7 Q ss_pred CHHHHHHHHHHHHCCCCC-----------CCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCC-CC-------- Q ss_conf 122332222222012221-----------0001001035544330133446642013420553277532-22-------- Q gi|254780300|r 138 HPSQALLDAFAIRHFKGK-----------ISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITL-LP-------- 197 (316) Q Consensus 138 HP~Q~LaDl~Ti~e~~g~-----------l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~-~~-------- 197 (316) ..+|+|.-+|-..+.-+. .+=.+|+.+|- +.+..++...+..-|++|++.-+..- +. T Consensus 281 ~~a~~~i~~f~~~~~~~k~~~~~~~~~~~~~i~kv~ViGa---G~MG~gIA~~~a~~G~~V~l~D~~~~~l~~~~~~~~~ 357 (725) T 2wtb_A 281 DTTKGLIHVFFSQRGTAKVPGVTDRGLVPRKIKKVAIIGG---GLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKA 357 (725) T ss_dssp HHHHHHHHHHHHHHGGGCCTTTSSSCCCCCCCCCEEEECC---SHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC---CHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHH T ss_conf 4655679999977676530344446777756777999897---6899999999986599815735575788878989999 Q ss_pred ---CCCC------------CCCCCCCCCHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCCCC--------CCHHHHH Q ss_conf ---1121------------2343300584560368622100011331233344445554202357--------5889998 Q gi|254780300|r 198 ---KDIS------------NMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYS--------LDEKKLK 254 (316) Q Consensus 198 ---~~~~------------~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~~~~~~~~~~~~~~~~~--------v~~~~l~ 254 (316) +... ...+..+.|+ ++++++|.|+-........+.+.....+++..+-. +.-..+. T Consensus 358 ~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~l~~~DlViEav~E~l~iK~~v~~~le~~~~~~aIlasNTS~l~i~~la 436 (725) T 2wtb_A 358 NLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIG 436 (725) T ss_dssp HHHHTTC----CTTHHHHTTTSEEEESSS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHT T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCCCCCH-HHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH T ss_conf 99998761310078899998315776777-77446776887044530012568999986467606998357644789885 Q ss_pred H-C--CCCCEEECCC-CCCC--------CCCCCHHHHC Q ss_conf 3-7--9985995589-9876--------8744767976 Q gi|254780300|r 255 Y-A--KKDALVMHPG-PINR--------NYEISSSVAD 280 (316) Q Consensus 255 ~-a--~~~ai~mHcL-P~~R--------g~Ev~~~v~d 280 (316) . + +...+-||.. |++. |.+.++++++ T Consensus 437 ~~~~~p~R~~g~HffnP~~~m~LVEii~g~~Ts~~~i~ 474 (725) T 2wtb_A 437 ERTKSQDRIVGAHFFSPAHIMPLLEIVRTNHTSAQVIV 474 (725) T ss_dssp TTCSCTTTEEEEEECSSTTTCCEEEEEECSSCCHHHHH T ss_pred HCCCCHHHEEEEECCCCCCCCCCCCCCCCCCCCHHHHH T ss_conf 11467132897403587322642123577775437899 No 178 >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Probab=23.11 E-value=32 Score=13.63 Aligned_cols=175 Identities=17% Similarity=0.088 Sum_probs=84.1 Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEC------CCCHHHH--HHHHHHHHHCCCCCCCCCCCCCCCCCCC Q ss_conf 9999999999999644204877521289769999607------8733789--9997987613521112333321013334 Q gi|254780300|r 19 DVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLE------TSTRTQT--SFEVAGKLLGVHVININTKNSAMKKGEN 90 (316) Q Consensus 19 el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~k------pStRTR~--SFe~A~~~LGg~~i~l~~~~s~~~kgEs 90 (316) .+...+.+|..+--+-.-.+ -++=|-..+..+.. |+.|.|+ +|..++..|+|..+ ..-+... + T Consensus 52 ~l~ev~~LA~~MT~K~Al~~---lp~GGgKggI~~~p~~~~~~~~e~e~l~R~~~~~l~~l~G~~i--~apDvgt----~ 122 (355) T 1c1d_A 52 ALTDAGKLAGAMTLKMAVSN---LPMGGGKSVIALPAPRHSIDPSTWARILRIHAENIDKLSGNYW--TGPDVNT----N 122 (355) T ss_dssp HHHHHHHHHHHHHHHHHHTT---CSCEEEEEEEECSSCGGGCCHHHHHHHHHHHHHHHHHTTTSEE--EEECTTC----C T ss_pred HHHHHHHHHHHHHHHHHHHC---CCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCC----C T ss_conf 99999999999999999818---9988715488328743557878999999999999887517663--3456798----8 Q ss_pred CCCHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC---CC--CCCCCCCEEECC Q ss_conf 2247999874136714652032100554200123421111234566312233222222201---22--210001001035 Q gi|254780300|r 91 IADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRH---FK--GKISNLHIAICG 165 (316) Q Consensus 91 ~~Dta~vls~~~~d~iv~R~~~~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e---~~--g~l~~l~ia~vG 165 (316) ..|-+.+...|. +....|+-..|.... -+.-+..=++++++ .. ++++|++++.-| T Consensus 123 ~~~m~~i~d~~~-------------------~vtgkp~~~gg~~~~-~~aTg~Gv~~~~~~~~~~~g~~~l~g~~VaIQG 182 (355) T 1c1d_A 123 SADMDTLNDTTE-------------------FVFGRSLERGGAGSS-AFTTAVGVFEAMKATVAHRGLGSLDGLTVLVQG 182 (355) T ss_dssp HHHHHHHHHHCS-------------------CBCCCCGGGTSCCCC-HHHHHHHHHHHHHHHHHHTTCCCSTTCEEEEEC T ss_pred HHHHHHHHHHCC-------------------EEEECCCCCCCCCCC-CCCEEEEEEEEHHHHHHHCCCCCCCCCEEEEEC T ss_conf 899999853314-------------------323025235898887-761357788722789987289986687799981 Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHC-CCCCCEEEEEEE Q ss_conf 5443301334466420134205532775322211212343300584560-368622100011 Q gi|254780300|r 166 DILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKG-LKNVDVIMILRM 226 (316) Q Consensus 166 D~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~d~~ea-~~~aDvv~~~~~ 226 (316) -+||..+....+...|+++.++....-........+.+.. ++++. -.++||++.--. T Consensus 183 ---fGnVG~~~a~~L~~~Ga~vv~~d~d~~~i~~~~~~~~~~i-~~~~~~~~~~DIliPcA~ 240 (355) T 1c1d_A 183 ---LGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAM 240 (355) T ss_dssp ---CSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSC T ss_pred ---CCHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHCCCCCC-CHHHCCCCCCEEEEECCC T ss_conf ---3436789998899729898741577887535675298302-554506326318976554 No 179 >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 Probab=22.71 E-value=33 Score=13.58 Aligned_cols=12 Identities=8% Similarity=0.407 Sum_probs=5.9 Q ss_pred CCCEEEECCCCC Q ss_conf 671465203210 Q gi|254780300|r 103 PNIIVIRHPYSG 114 (316) Q Consensus 103 ~d~iv~R~~~~~ 114 (316) +|+|++-.+... T Consensus 72 ad~iiiavps~~ 83 (335) T 1txg_A 72 AEVVLLGVSTDG 83 (335) T ss_dssp CSEEEECSCGGG T ss_pred CCEEEECCCHHH T ss_conf 875897376899 No 180 >1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A* Probab=22.21 E-value=33 Score=13.52 Aligned_cols=13 Identities=15% Similarity=0.646 Sum_probs=6.2 Q ss_pred HHHHHCCCCEEEE Q ss_conf 9874136714652 Q gi|254780300|r 97 TLNALRPNIIVIR 109 (316) Q Consensus 97 vls~~~~d~iv~R 109 (316) .+..+.+|++++- T Consensus 74 ~l~~~~~Dliv~~ 86 (212) T 1jkx_A 74 EIDMYAPDVVVLA 86 (212) T ss_dssp HHGGGCCSEEEES T ss_pred HHHHHCCCEEEEE T ss_conf 9997099999993 No 181 >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A Probab=21.87 E-value=34 Score=13.48 Aligned_cols=103 Identities=8% Similarity=0.094 Sum_probs=53.4 Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHC-CCC-EEEECCCCCC----CCCCCCCCCCCCCCCHHHCCCCCCEEEEEEECCHHH Q ss_conf 0100103554433013344664201-342-0553277532----221121234330058456036862210001133123 Q gi|254780300|r 158 NLHIAICGDILHSRVARSDIMLLNT-MGA-RIRVIAPITL----LPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERI 231 (316) Q Consensus 158 ~l~ia~vGD~~~~~v~~S~~~~~~~-~g~-~v~~~~P~~~----~~~~~~~~~~~~~~d~~ea~~~aDvv~~~~~~~e~~ 231 (316) ..+++++|- +..++..+.++.. ++. ++++..+..- +.+.....++....++.+++.++|+|++..-..+- T Consensus 125 ~~~l~iiG~---G~QA~~~l~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiI~taT~s~~P- 200 (322) T 1omo_A 125 SSVFGFIGC---GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKP- 200 (322) T ss_dssp CCEEEEECC---SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSC- T ss_pred CCEEEEECC---CHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCEEEECCCCCCC- T ss_conf 857999668---3567899999986524426887248989999999988751775333223330556389952788884- Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEECCCCCCC-CCCCCHHHHCCC Q ss_conf 334444555420235758899983799859955899876-874476797699 Q gi|254780300|r 232 PRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINR-NYEISSSVADGS 282 (316) Q Consensus 232 ~~~~~~~~~~~~~~~~v~~~~l~~a~~~ai~mHcLP~~R-g~Ev~~~v~d~~ 282 (316) + +.. +..++++.+.+-..-.. ..|++.+++..- T Consensus 201 ----------~-----~~~---~~l~~g~~i~~iGs~~p~~~Eld~~~~~~a 234 (322) T 1omo_A 201 ----------V-----VKA---EWVEEGTHINAIGADGPGKQELDVEILKKA 234 (322) T ss_dssp ----------C-----BCG---GGCCTTCEEEECSCCSTTCCCBCHHHHHTE T ss_pred ----------C-----CCH---HHCCCCCEEEEECCCCCCCCEECHHHHCCC T ss_conf ----------5-----466---665799879972456678736378995227 No 182 >1oao_A CODH, carbon monoxide dehydrogenase beta subunit; electron transfer, oxidoreductase, acetyl-COA formation, WOOD/ljungdahl pathway; 1.90A {Moorella thermoacetica} SCOP: e.26.1.2 PDB: 1mjg_A 2z8y_A 3i01_A 3i04_A Probab=21.78 E-value=34 Score=13.46 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=35.2 Q ss_pred CCCCCCCCCCCCC-CCHHHHHHHHHHHHCCCC-CCCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCC Q ss_conf 3421111234566-312233222222201222-10001001035544330133446642013420553277 Q gi|254780300|r 124 KGPSIINAGDGTH-EHPSQALLDAFAIRHFKG-KISNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAP 192 (316) Q Consensus 124 s~ppVINag~~~~-~HP~Q~LaDl~Ti~e~~g-~l~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P 192 (316) -.|||+|.|.... +|-.++. ..+.+.+| ++..|-++.+-.-..+-=+-+-...+-.+|..+++ +| T Consensus 540 gIPpVL~~GsCvDn~r~~~~a---~aLA~~lg~din~LP~~~~apew~eqKAvaI~~~~lalGI~~~l-Gp 606 (674) T 1oao_A 540 GLPPVFHMGSCVDNSRAVDLL---MAMANDLGVDTPKVPFVASAPEAMSGKAAAIGTWWVSLGVPTHV-GT 606 (674) T ss_dssp CCCSEEEEESGGGHHHHHHHH---HHHHHHHTSCGGGSCEEEEETTCCSHHHHHHHHHHHHTTCEEEE-SS T ss_pred CCCCEEEEECCHHHHHHHHHH---HHHHHHHCCCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCCEEE-CC T ss_conf 999861223567179999999---99999868994348835665157779999999999981992788-99 No 183 >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Probab=21.32 E-value=35 Score=13.40 Aligned_cols=27 Identities=4% Similarity=-0.111 Sum_probs=11.6 Q ss_pred HHHHCCCCCCCCCCCCCCCCCCHHHHHHH Q ss_conf 54200123421111234566312233222 Q gi|254780300|r 117 NSLMHKIKGPSIINAGDGTHEHPSQALLD 145 (316) Q Consensus 117 ~~~a~~~s~ppVINag~~~~~HP~Q~LaD 145 (316) .+.++......|.++| ...-|+..++= T Consensus 109 ~~~a~~~g~~~~~~~G--~~pg~~~~~a~ 135 (450) T 1ff9_A 109 DQAAKDAGITVMNEIG--LDPGIDHLYAI 135 (450) T ss_dssp HHHHHHTTCEEECSCB--BTTBHHHHHHH T ss_pred HHHHHHCCEEEEECCC--CCCCHHHHHHH T ss_conf 7887415837962677--78735789999 No 184 >3ive_A Nucleotidase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6} PDB: 3ivd_A* Probab=20.97 E-value=35 Score=13.36 Aligned_cols=73 Identities=18% Similarity=0.255 Sum_probs=28.8 Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEEECCC--CC--HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 0133342247999874136714652032--10--0554200123421111234566312233222222201222100010 Q gi|254780300|r 85 MKKGENIADTIATLNALRPNIIVIRHPY--SG--AVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLH 160 (316) Q Consensus 85 ~~kgEs~~Dta~vls~~~~d~iv~R~~~--~~--~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~Ti~e~~g~l~~l~ 160 (316) +.+|++. +..++.++.|++++=+-+ .+ .+..+.+.+..| ++.|=......+.....--+++.| ..|+| T Consensus 71 ~~~g~~~---~~~mn~~g~Da~~lGNHEFD~G~~~l~~~~~~~~fp-~l~aNv~~~~~~~~~~~~~~~i~~----~~G~k 142 (509) T 3ive_A 71 LTKGKAI---IDIMNTMPFDAVTIGNHEFDHGWDNTLLQLSQAKFP-IVQGNIFYQNSSKSFWDKPYTIIE----KDGVK 142 (509) T ss_dssp TTTTHHH---HHHHTTSCCSEECCCGGGGTTCHHHHHHHHTTCSSC-BCCCSEEETTSCCBSSSCSEEEEE----ETTEE T ss_pred HHCCHHH---HHHHHCCCCCEEEECHHHCCCCHHHHHHHHHHCCCC-EEECCCCCCCCCCCCCCCCEEEEE----ECCEE T ss_conf 7599899---999874599899984451365889999999758997-784454323454646788869999----89989 Q ss_pred EEECC Q ss_conf 01035 Q gi|254780300|r 161 IAICG 165 (316) Q Consensus 161 ia~vG 165 (316) |+++| T Consensus 143 IgviG 147 (509) T 3ive_A 143 IGVIG 147 (509) T ss_dssp EEEEE T ss_pred EEEEE T ss_conf 99998 No 185 >1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1 Probab=20.74 E-value=36 Score=13.33 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=33.5 Q ss_pred CCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHH-HHHHHHHC Q ss_conf 77417822389999999999999999644204877521289769999607873378999-97987613 Q gi|254780300|r 6 LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSF-EVAGKLLG 72 (316) Q Consensus 6 ~k~fL~~~dl~~~el~~ll~~A~~~k~~~~~~~~~~~~L~gk~~~~lF~kpStRTR~SF-e~A~~~LG 72 (316) ++.|+. ++++.++|..+++.|-. ...+....-.+..+.=||--|.. || +.|++-|| T Consensus 59 ~~~f~~-~~~~~~~l~~~~~~a~~------~~~~~~~~~~~~~~lELfhGPT~----sFKD~a~~~l~ 115 (428) T 1vb3_A 59 LSAFIG-DEIPQEILEERVRAAFA------FPAPVANVESDVGCLELFHGPTL----AFKDFGGRFMA 115 (428) T ss_dssp HHHHHG-GGSCHHHHHHHHHHHCC------SCCCEEEEETTEEEEECCCSTTS----BTHHHHHHHHH T ss_pred HHHHCC-CCCCHHHHHHHHHHHCC------CCCCCEEECCCCEEEEEEECCCC----CHHHHHHHHHH T ss_conf 998657-88999999999998638------88875341388568997348985----42416899999 No 186 >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.70A {Archaeoglobus fulgidus} Probab=20.59 E-value=35 Score=13.38 Aligned_cols=22 Identities=9% Similarity=0.158 Sum_probs=8.7 Q ss_pred CCHHHHHHHHHHCCCCEEEECC Q ss_conf 3013344664201342055327 Q gi|254780300|r 170 SRVARSDIMLLNTMGARIRVIA 191 (316) Q Consensus 170 ~~v~~S~~~~~~~~g~~v~~~~ 191 (316) +++...+...+...|.++.++. T Consensus 15 g~~g~~la~~L~~~g~~vvvid 36 (141) T 3llv_A 15 EAAGVGLVRELTAAGKKVLAVD 36 (141) T ss_dssp SHHHHHHHHHHHHTTCCEEEEE T ss_pred CHHHHHHHHHHHHCCCCEEEEE T ss_conf 9899999999997799489995 No 187 >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* Probab=20.37 E-value=36 Score=13.28 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=36.7 Q ss_pred CCCCEEECCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCC-CCCCCC-CC---C---HHH-CCCCCCEEEEE Q ss_conf 001001035544330133446642013420553277532221121-234330-05---8---456-03686221000 Q gi|254780300|r 157 SNLHIAICGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDIS-NMGVEV-FH---D---MQK-GLKNVDVIMIL 224 (316) Q Consensus 157 ~~l~ia~vGD~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~-~~~~~~-~~---d---~~e-a~~~aDvv~~~ 224 (316) ...+|..+| .+++..+....+...|.+++++.+..-..+... ..++.+ .- + +++ .+.+||.++.. T Consensus 18 ~~~~IiI~G---~g~~G~~ia~~L~~~g~~vvvId~d~~~~~~l~~~~~~~~i~GD~~d~~~L~~a~i~~a~~vI~~ 91 (155) T 2g1u_A 18 KSKYIVIFG---CGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155) T ss_dssp CCCEEEEEC---CSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC T ss_pred CCCEEEEEC---CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEEECCCCCHHHHHHCCHHHCCEEEEC T ss_conf 598199989---98999999999997899799994688984431203341369777600788874182246899991 No 188 >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium LT2} Probab=20.36 E-value=36 Score=13.27 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=8.3 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 868775699999999999 Q gi|254780300|r 287 QYQVEMGVAVRMAIIKEL 304 (316) Q Consensus 287 ~~Qa~Nrl~~~~AlL~~~ 304 (316) ++++-.-+.+-.|+.... T Consensus 322 ~~da~~~~~i~~A~~~S~ 339 (357) T 3ec7_A 322 SWDGYLAAVTADACVKSQ 339 (357) T ss_dssp HHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 189 >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A Probab=20.22 E-value=37 Score=13.26 Aligned_cols=96 Identities=17% Similarity=0.190 Sum_probs=49.5 Q ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHC---CCCEEEECCC------ Q ss_conf 897699996078733789999798761352111233332101333---4224799987413---6714652032------ Q gi|254780300|r 45 QGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGE---NIADTIATLNALR---PNIIVIRHPY------ 112 (316) Q Consensus 45 ~gk~~~~lF~kpStRTR~SFe~A~~~LGg~~i~l~~~~s~~~kgE---s~~Dta~vls~~~---~d~iv~R~~~------ 112 (316) +.|.++.+=---|--|++|++.| .+++|..|. .++.|+=||= |-+-+.....+.- .|++-.-... T Consensus 2 k~kii~I~GpTasGKS~la~~LA-~~~~~eIIs--aDS~QvYk~l~IgTaKps~~e~~~ipHhlid~~~p~e~~sv~~f~ 78 (322) T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLA-KRLNGEVIS--GDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQ 78 (322) T ss_dssp CCEEEEEECCTTSCHHHHHHHHH-HTTTEEEEE--CCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHH T ss_pred CCCEEEEECCCCCCHHHHHHHHH-HHCCCEEEE--EEHHHHCCCCCEEECCCCHHHHHCCCEEEECCCCCCCCEEHHHHH T ss_conf 98679998987216999999999-987996996--212765499976778999999907997741573788742299878 Q ss_pred ---CCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH Q ss_conf ---10055420012342111123456631223322222 Q gi|254780300|r 113 ---SGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAF 147 (316) Q Consensus 113 ---~~~~~~~a~~~s~ppVINag~~~~~HP~Q~LaDl~ 147 (316) ...+.+..+...+| ||=+|+|.+ .|+|.+=+ T Consensus 79 ~~a~~~i~~i~~r~k~P-IlVGGTglY---l~aLl~g~ 112 (322) T 3exa_A 79 DLATPLITEIHERGRLP-FLVGGTGLY---VNAVIHQF 112 (322) T ss_dssp HHHHHHHHHHHHTTCEE-EEESCCHHH---HHHHHHTC T ss_pred HHHHHHHHHHHHCCCCE-EEEECCHHH---HHHHHCCC T ss_conf 78999999999769980-999483889---99998185 Done!