PSIBLAST alignment of GI: 254780300 and protein with PDB id: 1js1

>gi|22218872|pdb|1JS1|X Chain X, Crystal Structure Of A New Transcarbamylase From The Anaerobic Bacterium Bacteroides Fragilis At 2.0 A Resolution Length = 324
>gi|22218873|pdb|1JS1|Y Chain Y, Crystal Structure Of A New Transcarbamylase From The Anaerobic Bacterium Bacteroides Fragilis At 2.0 A Resolution Length = 324

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 52/324 (16%), Positives = 97/324 (29%), Gaps = 30/324 (9%)

Query: 6   LYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFE 65
           +  F  V+D+   D+   L  + E  + +  +       +  T + +F  +S RT+ S +
Sbjct: 1   MKKFTCVQDIG--DLKSALAESFEIKKDRFKY---VELGRNKTLLMIFFNSSLRTRLSTQ 55

Query: 66  VA------------GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRH--- 110
            A                   +           K E++ + I  +      I V      
Sbjct: 56  KAALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCYCDIIGVRSFARF 115

Query: 111 ----PYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISN---LHIAI 163
                    V            + + +    HP Q+  D   I  +K        +  A 
Sbjct: 116 ENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAP 175

Query: 164 CGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMI 223
               L   V  S    +N       +  P              V +D  K  +  D I  
Sbjct: 176 HPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYA 235

Query: 224 LRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQ 283
                          I      +++ ++++     +A  MH  P+ RN  ++  V +  Q
Sbjct: 236 KNW--AAYTGDNYGQILSTDRNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTDDVIESPQ 292

Query: 284 SIIQYQVEMGVAVRMAIIKELLEN 307
           SI+  +          ++K LLEN
Sbjct: 293 SIVIPEAANREISATVVLKRLLEN 316