RPSBLAST alignment of GI: 254780300 and protein with PDBid: 3gd5

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis; 2.10A {Gloeobacter violaceus pcc 7421} Length = 323

 Score =  180 bits (456), Expect = 4e-46
 Identities = 69/310 (22%), Positives = 125/310 (40%), Gaps = 18/310 (5%)

Query: 8   NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
           + +++ DL    ++ LL  A++   K+         L G     +FL+ STRT+ SF VA
Sbjct: 15  DLLSLDDLDEAQLHALLTLAHQL--KR---GERVANLHGKVLGLVFLKASTRTRVSFTVA 69

Query: 68  GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
              LG  VI+++  N+ + +GE + DT         + + IR      +    H    P 
Sbjct: 70  MYQLGGQVIDLSPSNTQVGRGEPVRDTARV-LGRYVDGLAIRTFAQTELEEYAHYAGIP- 127

Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
           +INA    HEHP Q + D   IR   G+++ L +A  GD  +   +         M   +
Sbjct: 128 VINALTD-HEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAV 186

Query: 188 RVIAPITLLPKDIS---------NMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPS 238
                 T  P   +            V++  D  +  +   ++            +    
Sbjct: 187 ATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT-SMGQEAETQH 245

Query: 239 IREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRM 298
             +    Y ++   L  A  +A+V+H  P +R  EI+  V +G +S I  + E  +  + 
Sbjct: 246 RLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQK 305

Query: 299 AIIKELLENQ 308
           A++  L+  +
Sbjct: 306 AVLAALMGGR 315