RPSBLAST alignment of GI: 254780300 and protein with PDBid: 3grf

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} Length = 328

 Score =  215 bits (549), Expect = 9e-57
 Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 28/322 (8%)

Query: 8   NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
           + +T+  L  +++ YL+DRA +    K +    T R    T +  F + S RT+ S E A
Sbjct: 9   HLLTISALCPKELAYLIDRALDM---KKNPAKYTARAANKTLLAFFAKPSLRTRVSLETA 65

Query: 68  GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
              LG H I      ++   G+      A + +   +I   R      +  +      P 
Sbjct: 66  MTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRMVDICTARLATKEMMREMAQHASVP- 124

Query: 128 IINAGDGTHEHPSQALLDAFAIR-------HFKGKISNLHIAICGDILHSRVARSDIMLL 180
                     HP Q + D   I+        F      +  A CGD   + V    +   
Sbjct: 125 -CINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDS-MNNVTYDLMRGC 182

Query: 181 NTMGARIRVIAPITLLPKDIS---------------NMGVEVFHDMQKGLKNVDVIMILR 225
             +G    V  P     K I                   +++FHD +KG + VDV+    
Sbjct: 183 ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDS 242

Query: 226 MQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSI 285
                I +    +  +    + +D+  +    K ++ M+  P  R  E ++SV DG +S+
Sbjct: 243 WMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKSV 302

Query: 286 IQYQVEMGVAVRMAIIKELLEN 307
              +    +   MA++   L +
Sbjct: 303 CYDEAGNRLHSAMAVLDFFLHD 324