RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase
catalytic subunit [Candidatus Liberibacter asiaticus str. psy62]
(316 letters)
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal
cavity, hydrolase, metal- binding, pyrimidine
biosynthesis, zinc; HET: FLC; 2.30A {Aquifex aeolicus}
Length = 291
Score = 257 bits (658), Expect = 2e-69
Identities = 110/298 (36%), Positives = 166/298 (55%), Gaps = 10/298 (3%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ ++ DL+ ++V +L A E+ + K + + F E STRT+ SFE A
Sbjct: 3 SLISSLDLTREEVEEILKYAKEFKEGKE-------ETIKASAVLFFSEPSTRTRLSFEKA 55
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
+ LG+ ++ S+ KGE+ DT+ T L + +V R P+ + K
Sbjct: 56 ARELGIETYLVSGSESSTVKGESFFDTLKTFEGLGFDYVVFRVPFVFFPYKEIVKSLNLR 115
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
++NAGDGTH+HPSQ L+D F I+ G++ +L + GDI HSRV RS LLN GA+I
Sbjct: 116 LVNAGDGTHQHPSQGLIDFFTIKEHFGEVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKI 175
Query: 188 RVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYS 247
V P TL+P+D+ V+VF D+ KG+ DV++ LR+Q+ER + IPS Y +
Sbjct: 176 GVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIWLRLQKERQKENYIPSESSYFKQFG 235
Query: 248 LDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305
L +++ +K L MHPGP+NRN +I + +S+IQ QV+ G+ VR AI K L
Sbjct: 236 LTKERF---EKVKLYMHPGPVNRNVDIDHELVYTEKSLIQEQVKNGIPVRKAIYKFLW 290
>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A
{Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB:
1ort_A
Length = 335
Score = 242 bits (620), Expect = 7e-65
Identities = 71/339 (20%), Positives = 131/339 (38%), Gaps = 39/339 (11%)
Query: 3 SFPLYN--FVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRT 60
+F ++N +++ S +++ YLLD + + ++ + L+ +F +TSTRT
Sbjct: 1 AFNMHNRNLLSLMHHSTRELRYLLDLSRD-LKRAKYTGTEQQHLKRKNIALIFEKTSTRT 59
Query: 61 QTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLM 120
+ +FEVA G +V I+ +S + E++ DT L + + I R V L
Sbjct: 60 RCAFEVAAYDQGANVTYIDPNSSQIGHKESMKDTARVLGRM-YDAIEYRGFKQEIVEELA 118
Query: 121 HKIKGPSIINAGDGTHEHPSQALLDAFAIR-HFKGKISNLHIAICGDILHSRVARSDIML 179
P + N G HP+Q L D +R H + ++ A GD + + S +++
Sbjct: 119 KFAGVP-VFN-GLTDEYHPTQMLADVLTMREHSDKPLHDISYAYLGD-ARNNMGNSLLLI 175
Query: 180 LNTMGARIRVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQ 228
+G +R+ AP L P D S + + D ++ +K VD +
Sbjct: 176 GAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVS 235
Query: 229 ERIPRSLIPSIREYKHVYSLDEKKLK-YAKKDALVMHPGP-------------------I 268
P + Y ++ + +K A MH P +
Sbjct: 236 MGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLPAFHNSETKVGKQIAEQYPNL 295
Query: 269 NRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307
E++ V + +I Q E + AI+ L +
Sbjct: 296 ANGIEVTEDVFESPYNIAFEQAENRMHTIKAILVSTLAD 334
>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A
{Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB:
1a1s_A
Length = 315
Score = 232 bits (592), Expect = 1e-61
Identities = 81/311 (26%), Positives = 140/311 (45%), Gaps = 18/311 (5%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ + ++D + +++ +L+ A + F+ L+G T +F + STRT+ SFEVA
Sbjct: 9 DLLCLQDYTAEEIWTILETA-KMFKIWQKIGKPHRLLEGKTLAMIFQKPSTRTRVSFEVA 67
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG H + +N ++ +++GE IADT L + + I+ R V L P
Sbjct: 68 MAHLGGHALYLNAQDLQLRRGETIADTARVL-SRYVDAIMARVYDHKDVEDLAKYATVP- 125
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+IN G HP QAL D I KG I + + GD + VA S ++ +GA +
Sbjct: 126 VIN-GLSDFSHPCQALADYMTIWEKKGTIKGVKVVYVGD--GNNVAHSLMIAGTKLGADV 182
Query: 188 RVIAPITLLPKD-----------ISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLI 236
V P P + S E+ HD K +K+ DVI + +
Sbjct: 183 VVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIY-TDVWASMGQEAEA 241
Query: 237 PSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAV 296
R+ + +++ +K+AK D + MH P +R E++ V D S++ Q E +
Sbjct: 242 EERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDSPNSVVWDQAENRLHA 301
Query: 297 RMAIIKELLEN 307
+ A++ ++
Sbjct: 302 QKAVLALVMGG 312
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor
complex, transferase; HET: PAL; 1.80A {Pyrococcus
abyssi} SCOP: c.78.1.1 c.78.1.1
Length = 308
Score = 216 bits (551), Expect = 5e-57
Identities = 91/305 (29%), Positives = 144/305 (47%), Gaps = 13/305 (4%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ ++++D S +D+ +L A +++ +G LF E STRT+ SFE A
Sbjct: 7 DVISIRDFSKEDIETVLATAER-LERELKEKGQLEYAKGKILATLFFEPSTRTRLSFESA 65
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG VI +++ K ++IVIRHP GA + P
Sbjct: 66 MHRLGGAVIGFAEASTSSVKKGESLRDTIKTVEQYCDVIVIRHPKEGAARLAAEVAEVP- 124
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+INAGDG+++HP+Q LLD + I+ G+I L I + GD+ + R S L +
Sbjct: 125 VINAGDGSNQHPTQTLLDLYTIKKEFGRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVEL 184
Query: 188 RVIAPITLL-PKDI------SNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIR 240
+I+P L P+ I M V ++ + +DV+ + R+Q+ER P
Sbjct: 185 YLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDE--QEYL 242
Query: 241 EYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI 300
+ K Y ++ K L+ AK + +MHP P R EI V + +I QV GV VRMA+
Sbjct: 243 KVKGSYQVNLKVLEKAKDELRIMHPLP--RVDEIHPEVDNTKHAIYFRQVFNGVPVRMAL 300
Query: 301 IKELL 305
+ +L
Sbjct: 301 LALVL 305
>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase,
arginine degradation pathway, giardia lamblia, drug
target; 2.00A {Giardia intestinalis}
Length = 328
Score = 215 bits (549), Expect = 9e-57
Identities = 66/322 (20%), Positives = 117/322 (36%), Gaps = 28/322 (8%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ +T+ L +++ YL+DRA + K + T R T + F + S RT+ S E A
Sbjct: 9 HLLTISALCPKELAYLIDRALDM---KKNPAKYTARAANKTLLAFFAKPSLRTRVSLETA 65
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG H I ++ G+ A + + +I R + + P
Sbjct: 66 MTRLGGHAIYYELGANSNVGGKETVQDTAEVFSRMVDICTARLATKEMMREMAQHASVP- 124
Query: 128 IINAGDGTHEHPSQALLDAFAIR-------HFKGKISNLHIAICGDILHSRVARSDIMLL 180
HP Q + D I+ F + A CGD + V +
Sbjct: 125 -CINALDDFGHPLQMVCDFMTIKEKFTAAGEFSNGFKGIKFAYCGDS-MNNVTYDLMRGC 182
Query: 181 NTMGARIRVIAPITLLPKDIS---------------NMGVEVFHDMQKGLKNVDVIMILR 225
+G V P K I +++FHD +KG + VDV+
Sbjct: 183 ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDS 242
Query: 226 MQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSI 285
I + + + + +D+ + K ++ M+ P R E ++SV DG +S+
Sbjct: 243 WMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDGPKSV 302
Query: 286 IQYQVEMGVAVRMAIIKELLEN 307
+ + MA++ L +
Sbjct: 303 CYDEAGNRLHSAMAVLDFFLHD 324
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius}
SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Length = 299
Score = 210 bits (536), Expect = 3e-55
Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 13/303 (4%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ ++ + S ++ + ++Y + N + L G T F E STRT SF+ A
Sbjct: 3 HIISAYNFSRDELEDIFALTDKY---SKNLNDTRKILSGKTISIAFFEPSTRTYLSFQKA 59
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG VI + + S + + IV+RH Y GA P
Sbjct: 60 IINLGGDVIGFSGEESTSVAKGENLADTIRMLNNYSDGIVMRHKYDGASRFASEISDIP- 118
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+INAGDG HEHP+QA++D + I I L A+ GD+ ++R S + +L ++
Sbjct: 119 VINAGDGKHEHPTQAVIDIYTINKHFNTIDGLVFALLGDLKYARTVNSLLRILTRFRPKL 178
Query: 188 RVIAPITLLPK-----DISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREY 242
+ LL D N V+ + + + VDV+ + R+Q+ER + +
Sbjct: 179 VYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEM--EYEKI 236
Query: 243 KHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIK 302
K Y + KKD++++HP P R EI V +++ Q GV VRM+I+
Sbjct: 237 KGSYIVSLDLANKMKKDSIILHPLP--RVNEIDRKVDKTTKAKYFEQASYGVPVRMSILT 294
Query: 303 ELL 305
++
Sbjct: 295 KIY 297
>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A
{Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A
1fvo_A 1c9y_A* 1fb5_A
Length = 321
Score = 202 bits (515), Expect = 7e-53
Identities = 60/316 (18%), Positives = 119/316 (37%), Gaps = 14/316 (4%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ +T+K+ + +++ Y+L + + + LQG + +F + STRT+ S E
Sbjct: 8 DLLTLKNFTGEEIKYMLWLSADLKFRIKQKGEYLPLLQGKSLGMIFEKRSTRTRLSTETG 67
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LLG H + T++ + E++ DT L+++ ++ + S
Sbjct: 68 FALLGGHPCFLTTQDIHLGVNESLTDTARVLSSMADAVLARVYKQSDLDTLAKEA---SI 124
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGD---ILHSRVARSDIMLLNTMG 184
I G HP Q L D ++ + L ++ GD ILHS + + ++
Sbjct: 125 PIINGLSDLYHPIQILADYLTLQEHYSSLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQA 184
Query: 185 ARIRVIAPITLLPKDISNMG------VEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPS 238
A + P + K + + +D + +V++
Sbjct: 185 ATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEE-KKK 243
Query: 239 IREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRM 298
+ Y + K K A D +H P + E+ V +S++ + E M
Sbjct: 244 RLQAFQGYQVTMKTAKVAASDWTFLHCLP-RKPEEVDDEVFYSPRSLVFPEAENRKWTIM 302
Query: 299 AIIKELLENQNKITQK 314
A++ LL + + QK
Sbjct: 303 AVMVSLLTDYSPQLQK 318
>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase;
2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1
PDB: 2fg6_X* 2fg7_X* 2g7m_X*
Length = 324
Score = 195 bits (496), Expect = 1e-50
Identities = 60/323 (18%), Positives = 107/323 (33%), Gaps = 32/323 (9%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
F V+D+ D+ L + E KK F + T + +F +S RT+ S + A
Sbjct: 3 KFTCVQDIG--DLKSALAESFEI--KKDRFKYVEL-GRNKTLLMIFFNSSLRTRLSTQKA 57
Query: 68 GKLLGVHVININTKNSAMK------------KGENIADTIATLNALRPNIIVIRHPYSGA 115
LG++VI ++ A K K E++ + I + +II +R
Sbjct: 58 ALNLGMNVIVLDINQGAWKLETERGVIMDGDKPEHLLEAIPVMGCY-CDIIGVRSFARFE 116
Query: 116 VNSLMHKIKGP--------SIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAIC--- 164
+ + + + HP Q+ D I +K +
Sbjct: 117 NREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEEYKKTARPKVVMTWAPH 176
Query: 165 GDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMIL 224
L V S +N + P V +D K + D I
Sbjct: 177 PRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAK 236
Query: 225 RMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQS 284
I +++ ++++ +A MH P+ RN ++ V + QS
Sbjct: 237 NWA--AYTGDNYGQILSTDRNWTVGDRQMA-VTNNAYFMHCLPVRRNMIVTDDVIESPQS 293
Query: 285 IIQYQVEMGVAVRMAIIKELLEN 307
I+ + ++K LLEN
Sbjct: 294 IVIPEAANREISATVVLKRLLEN 316
>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography,
ornithine carbamyoltransferase, carbamoyl phosphate, L-
norvaline; 2.20A {Mycobacterium tuberculosis} PDB:
2p2g_A
Length = 307
Score = 185 bits (469), Expect = 1e-47
Identities = 73/310 (23%), Positives = 129/310 (41%), Gaps = 19/310 (6%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+F+ DLS + +L+ A E + P +F + STRT+ SFE+
Sbjct: 4 HFLRDDDLSPAEQAEVLELAAELKKDPVSRRPL---QGPRGVAVIFDKNSTRTRFSFELG 60
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG H + +++ ++ + + E + DT + + + IV R ++++ P
Sbjct: 61 IAQLGGHAVVVDSGSTQLGRDETLQDTA-KVLSRYVDAIVWRTFGQERLDAMASVATVP- 118
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+INA HP Q L D I KG + L ++ GD ++ +A S ++ T G +
Sbjct: 119 VINALS-DEFHPCQVLADLQTIAERKGALRGLRLSYFGDGANN-MAHSLLLGGVTAGIHV 176
Query: 188 RVIAPITLLPKDISNMGV-----------EVFHDMQKGLKNVDVIMILRMQQERIPRSLI 236
V AP LP V D DV++ +
Sbjct: 177 TVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGL 236
Query: 237 PSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAV 296
++ ++ L+ + L A DA+V+H P +R EI+ +V DG S + + E +
Sbjct: 237 DRVKPFRPFQ-LNSRLLALADSDAIVLHCLPAHRGDEITDAVMDGPASAVWDEAENRLHA 295
Query: 297 RMAIIKELLE 306
+ A++ LLE
Sbjct: 296 QKALLVWLLE 305
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.00A {Thermus thermophilus HB8}
Length = 301
Score = 185 bits (469), Expect = 1e-47
Identities = 58/299 (19%), Positives = 114/299 (38%), Gaps = 8/299 (2%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ + +++ LLD A + +++ L+G LF + S RT+T+ EVA
Sbjct: 11 DLLDFSGYGPKELQALLDLAEQLKRERYRGED----LKGKVLALLFEKPSLRTRTTLEVA 66
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG H + ++ K + + E + D L I R V +L K P
Sbjct: 67 MVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGI-AARVFRHETVEALARHAKVPV 125
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+ D HP QAL D ++ G ++ L +A GD + + ++ L + R+
Sbjct: 126 VNALSD--RAHPLQALADLLTLKEVFGGLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRV 183
Query: 188 RVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYS 247
P + HD ++ + +R+++ +
Sbjct: 184 ATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQG-FQ 242
Query: 248 LDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLE 306
++ + LK + + + +H P + E + G +S + Q E + A++ LL+
Sbjct: 243 VNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHGPRSRVFDQAENRLHTAKAVLLTLLK 301
>1zq6_A Otcase, ornithine carbamoyltransferase; alpha/beta two-domain; HET:
AOR; 1.80A {Xanthomonas campestris} PDB: 1yh0_A* 1zq2_A
1yh1_A* 1zq8_A* 2g6a_A* 2g65_A* 2g6c_A* 2g68_A*
Length = 359
Score = 185 bits (469), Expect = 1e-47
Identities = 69/336 (20%), Positives = 125/336 (37%), Gaps = 44/336 (13%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+F+ +D S +++ LL +A + + K + L+G + +F S RT+TSFE+
Sbjct: 25 HFLNTQDWSRAELDALLTQAALFKRNKLG-----SELKGKSIALVFFNPSMRTRTSFELG 79
Query: 68 GKLLGVHVININTKNSAMK---------KGENIADT--IATLNALRPNIIVIRHPYSGAV 116
LG H + + A G+ +A + ++I +R
Sbjct: 80 AFQLGGHAVVLQPGKDAWPIEFNLGTVMDGDTEEHIAEVARVLGRYVDLIGVRAFPKFVD 139
Query: 117 NSLMHK-------IKGPSIINAGDGTHEHPSQALLDAFAIRH------FKGKISNLHIAI 163
S + K + T HP Q L A A++ +GK L
Sbjct: 140 WSKDREDQVLKSFAKYSPVPVINMETITHPCQELAHALALQEHFGTPDLRGKKYVLTWTY 199
Query: 164 CGDILHSRVARSDIMLLNTMGARIRVIAPITLLPKDI------------SNMGVEVFHDM 211
L++ VA S + + MG + ++ P D S ++V HD+
Sbjct: 200 HPKPLNTAVANSALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDI 259
Query: 212 QKGLKNVDVIMILRMQQERIPRSLIPS--IREYKHVYSLDEKKLKYAKKDALVMHPGPIN 269
DV+ + P IR+ + +DE+K+ + + H P+
Sbjct: 260 DSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMA-LTNNGVFSHCLPLR 318
Query: 270 RNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305
RN + + +V D I + E + V+ AI+ L+
Sbjct: 319 RNVKATDAVMDSPNCIAIDEAENRLHVQKAIMAALV 354
>2rgw_A Aspartate carbamoyltransferase; aspartate transcarbamoylase,
pyrimidine biosynthesis, thermostability; 2.80A
{Methanococcus jannaschii} PDB: 3e2p_A
Length = 306
Score = 180 bits (457), Expect = 3e-46
Identities = 88/310 (28%), Positives = 142/310 (45%), Gaps = 18/310 (5%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ +++KD+ +++ +LD A + ++ + L+G +F E STRT+ SFE A
Sbjct: 3 HLISMKDIGKEEILEILDEARK-MEELLNTKRPLKLLEGKILATVFYEPSTRTRLSFETA 61
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
K LG VI + S+ + + +IIV+RHP GA +
Sbjct: 62 MKRLGGEVITMTDLKSSSVAKGESLIDTIRVISGYADIIVLRHPSEGAARL-ASEYSQVP 120
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
IINAGDG+++HP+Q LLD + I G+I + IA GD+ + R S + L+
Sbjct: 121 IINAGDGSNQHPTQTLLDLYTIMREIGRIDGIKIAFVGDLKYGRTVHSLVYALSLFENVE 180
Query: 188 RVIA--------PITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSI 239
+ N+ + ++DV+ + R+Q+ER P
Sbjct: 181 MYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFP-----DP 235
Query: 240 REYKHVYSLDEKKLKY-AKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRM 298
EY+ V + K +Y K ++MHP P R EI V D Q+ Q G+ VRM
Sbjct: 236 NEYEKVKGSYKIKREYVEGKKFIIMHPLP--RVDEIDYDVDDLPQAKYFKQSFYGIPVRM 293
Query: 299 AIIKELLENQ 308
AI+K+L+E+
Sbjct: 294 AILKKLIEDN 303
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics,
NYSGXRC, target 9454P, operon, amino-acid biosynthesis;
2.10A {Gloeobacter violaceus pcc 7421}
Length = 323
Score = 180 bits (456), Expect = 4e-46
Identities = 69/310 (22%), Positives = 125/310 (40%), Gaps = 18/310 (5%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ +++ DL ++ LL A++ K+ L G +FL+ STRT+ SF VA
Sbjct: 15 DLLSLDDLDEAQLHALLTLAHQL--KR---GERVANLHGKVLGLVFLKASTRTRVSFTVA 69
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG VI+++ N+ + +GE + DT + + IR + H P
Sbjct: 70 MYQLGGQVIDLSPSNTQVGRGEPVRDTARV-LGRYVDGLAIRTFAQTELEEYAHYAGIP- 127
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+INA HEHP Q + D IR G+++ L +A GD + + M +
Sbjct: 128 VINALTD-HEHPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAV 186
Query: 188 RVIAPITLLPKDIS---------NMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPS 238
T P + V++ D + + ++ +
Sbjct: 187 ATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWT-SMGQEAETQH 245
Query: 239 IREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRM 298
+ Y ++ L A +A+V+H P +R EI+ V +G +S I + E + +
Sbjct: 246 RLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEGPRSRIWDEAENRLHAQK 305
Query: 299 AIIKELLENQ 308
A++ L+ +
Sbjct: 306 AVLAALMGGR 315
>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P;
1.88A {Escherichia coli K12} SCOP: c.78.1.1 c.78.1.1
PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A*
1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A*
1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A
...
Length = 310
Score = 180 bits (456), Expect = 5e-46
Identities = 95/319 (29%), Positives = 156/319 (48%), Gaps = 24/319 (7%)
Query: 5 PLY--NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQT 62
PLY + +++ DLS D+N +L A + K NP L+ + F E STRT+
Sbjct: 3 PLYQKHIISINDLSRDDLNLVLATAAKL--KA---NPQPELLKHKVIASCFFEASTRTRL 57
Query: 63 SFEVAGKLLGVHVININTKNSAM--KKGENIADTIATLNALRPNIIVIRHPYSGAVNSLM 120
SFE + LG V+ + + KKGE +ADTI+ ++ + IV+RHP GA
Sbjct: 58 SFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVIST-YVDAIVMRHPQEGAARLAT 116
Query: 121 HKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLL 180
++NAGDG+++HP+Q LLD F I+ +G++ NLH+A+ GD+ + R S L
Sbjct: 117 EFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAMVGDLKYGRTVHSLTQAL 176
Query: 181 NTMGA-RIRVIAPITLLPK-------DISNMGVEVFHDMQKGLKNVDVIMILRMQQERIP 232
R IAP L D + + +++ + VD++ + R+Q+ER+
Sbjct: 177 AKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLD 236
Query: 233 RSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEM 292
S +++ L L AK + V+HP P R EI++ V + Q
Sbjct: 237 PSEYANVKAQFV---LRASDLHNAKANMKVLHPLP--RVDEIATDVDKTPHAWYFQQAGN 291
Query: 293 GVAVRMAIIKELLENQNKI 311
G+ R A++ +L N++ +
Sbjct: 292 GIFARQALLALVL-NRDLV 309
>2at2_A Aspartate carbamoyltransferase; 3.00A {Bacillus subtilis} SCOP:
c.78.1.1 c.78.1.1
Length = 300
Score = 172 bits (437), Expect = 7e-44
Identities = 107/303 (35%), Positives = 169/303 (55%), Gaps = 11/303 (3%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ T+ +LS +++ LL A E K+ +L G NLF E STRT+ SFEVA
Sbjct: 3 HLTTMSELSTEEIKDLLQTAQELKSGKTD-----NQLTGKFAANLFFEPSTRTRFSFEVA 57
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
K LG++V+N++ +++++KGE + DTI TL ++ ++ VIRH L+ ++ P
Sbjct: 58 EKKLGMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSEDEYYEELVSQVNIP- 116
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
I+NAGDG +HP+Q+LLD I L ++I GDI HSRVARS+ +L +GAR+
Sbjct: 117 ILNAGDGCGQHPTQSLLDLMTIYEEFNTFKGLTVSIHGDIKHSRVARSNAEVLTRLGARV 176
Query: 188 RVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIREYKHVYS 247
P + M + +++ DV+M+LR+Q ER S Y + Y
Sbjct: 177 LFSGPSE---WQDEENTFGTYVSMDEAVESSDVVMLLRIQNERHQS--AVSQEGYLNKYG 231
Query: 248 LDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307
L ++ + K+ A++MHP P+NR EI S+ + +S I Q++ GV +RMA+I+ L+
Sbjct: 232 LTVERAERMKRHAIIMHPAPVNRGVEIDDSLVESEKSRIFKQMKNGVFIRMAVIQCALQT 291
Query: 308 QNK 310
K
Sbjct: 292 NVK 294
>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural
genomics, JCSG, protein structure initiative, PSI; 2.25A
{Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1
Length = 325
Score = 171 bits (434), Expect = 2e-43
Identities = 61/310 (19%), Positives = 118/310 (38%), Gaps = 18/310 (5%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ +T+ D S +++ YLLD + + + ++ T R +G+T +F + STRT+ +FE A
Sbjct: 21 SLLTLLDFSPEEIRYLLDISKQ-VKMENRSKLRTERFKGMTLAMIFEKRSTRTRLAFETA 79
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
G H I ++ + + E++ DT L + I+ +
Sbjct: 80 FAEEGGHPIFLSPNDIHLGAKESLEDTARVLGRMVDAIMFRGYKQETV---EKLAEYSGV 136
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+ G HP+QAL D I G++ + + VA S ++ MG
Sbjct: 137 PVYNGLTDEFHPTQALADLMTIEENFGRLKG-VKVVFMGDTRNNVATSLMIACAKMGMNF 195
Query: 188 RVIAPITLLPKDISNMGVEVF-----------HDMQKGLKNVDVIMILRMQQERIPRSLI 236
P L P+ + ++++ L DV+ +
Sbjct: 196 VACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVY-TDVWASMGEEDKE 254
Query: 237 PSIREYKHVYSLDEKKLKY-AKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVA 295
Y ++E+ ++ K + + MH P + E++ V +G QS + + E
Sbjct: 255 KERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEGKQSRVWDEAENRKH 314
Query: 296 VRMAIIKELL 305
A++ L
Sbjct: 315 TIKAVMIATL 324
>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal
binding-site, hexamer, cytoplasm, arginine metabolism;
2.10A {Lactobacillus hilgardii}
Length = 359
Score = 167 bits (423), Expect = 3e-42
Identities = 62/331 (18%), Positives = 114/331 (34%), Gaps = 38/331 (11%)
Query: 8 NFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVA 67
+ + KD S ++ YL+D + L+G LF ++STRT+++F A
Sbjct: 30 SVLAEKDFSAAELEYLIDFGLH-LKALKKAGIPHHYLEGKNIALLFEKSSTRTRSAFTTA 88
Query: 68 GKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKGPS 127
LG H + + + K E+ +DT L ++ I ++ +
Sbjct: 89 SIDLGAHPEYLGQNDIQLGKKESTSDTAKVLGSMFDGIEFRGFKQ---SDAEILARDSGV 145
Query: 128 IINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARI 187
+ G HP+Q L D ++ GK+ + VA S ++ +G I
Sbjct: 146 PVWNGLTDEWHPTQMLADFMTVKENFGKLQG-LTLTFMGDGRNNVANSLLVTGAILGVNI 204
Query: 188 RVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLI 236
++AP L P + S + + D+ +GLK +V+ + S
Sbjct: 205 HIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWV--SMGESNW 262
Query: 237 PSIREYKHVYSLDE---KKLKYAKKDALVMHPGPINRN-----------------YEISS 276
+ Y ++ KK + MH P N E++
Sbjct: 263 EERVKELTPYQVNMEAMKKTGTPDDQLIFMHCLPAFHNTDTQYGKEIKEKYGITEMEVTD 322
Query: 277 SVADGSQSIIQYQVEMGVAVRMAIIKELLEN 307
V + + E + A++ L N
Sbjct: 323 EVFTSKYARQFEEAENRMHSIKAMMAATLGN 353
>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex;
HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1
c.78.1.1 PDB: 1akm_A* 2otc_A*
Length = 333
Score = 148 bits (375), Expect = 1e-36
Identities = 56/334 (16%), Positives = 111/334 (33%), Gaps = 35/334 (10%)
Query: 3 SFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQT 62
F +F+ + D + ++N LL A + + +L G +F + STRT+
Sbjct: 2 GFYHKHFLKLLDFTPAELNSLLQLAAK-LKADKKSGKEEAKLTGKNIALIFEKDSTRTRC 60
Query: 63 SFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHK 122
SFEVA G V + S + E+I DT L + I +
Sbjct: 61 SFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVE---TLA 117
Query: 123 IKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNT 182
+ G HP+Q L D ++ + + + + ++
Sbjct: 118 EYASVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAA 177
Query: 183 M-GARIRVIAPITLLPKDI-----------SNMGVEVFHDMQKGLKNVDVIMILRMQQER 230
+ G +R++AP P+ + + + D+ KG++ D I
Sbjct: 178 LTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMG 237
Query: 231 IPRSLIPSIREYKHVYSLDEKKLK-YAKKDALVMHPGP------------------INRN 271
+ Y ++ K ++ + +H P ++
Sbjct: 238 EAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGG 297
Query: 272 YEISSSVADGSQSIIQYQVEMGVAVRMAIIKELL 305
E++ V + + SI+ Q E + A++ L
Sbjct: 298 MEVTDEVFESAASIVFDQAENRMHTIKAVMVATL 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 50.7 bits (121), Expect = 4e-07
Identities = 72/362 (19%), Positives = 104/362 (28%), Gaps = 174/362 (48%)
Query: 6 LYNFVT----VKDL--SMQDV-NYLL---DRANEYFQKKSHF-------NPSTTR----- 43
LY T V DL + + L+ A + F + NPS T
Sbjct: 176 LYQ--TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEWLENPSNTPDKDYL 231
Query: 44 --------LQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTI 95
L G+ Q+ + V KLLG GE
Sbjct: 232 LSIPISCPLIGVIQL-----------AHYVVTAKLLGFTP------------GE------ 262
Query: 96 ATLNALRPNIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGK 155
LR + GA G H SQ L+ A AI
Sbjct: 263 -----LRSYL-------KGA---------------TG-----H-SQGLVTAVAI------ 283
Query: 156 ISNLHIAICGDILHS--RVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHD--- 210
A D S R I +L +G R P T LP I +E ++
Sbjct: 284 ------AET-DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE--NNEGV 334
Query: 211 ---MQ--KGLKNVDVIMILRMQQERIPR--SLIPSIREYKHVY-SLDEKKLKYAKKDALV 262
M L V Q+ + + S +P K V SL
Sbjct: 335 PSPMLSISNLTQEQV-------QDYVNKTNSHLP---AGKQVEISL-------------- 370
Query: 263 MHPGPIN--RNYEISSSVADGS-QSIIQYQVEMGVAVRMAIIK---ELLENQNKI--TQK 314
+N +N V G QS+ Y G+ + + K L +Q++I +++
Sbjct: 371 -----VNGAKNL-----VVSGPPQSL--Y----GLNLTLRKAKAPSGL--DQSRIPFSER 412
Query: 315 EL 316
+L
Sbjct: 413 KL 414
Score = 46.9 bits (111), Expect = 7e-06
Identities = 40/307 (13%), Positives = 81/307 (26%), Gaps = 141/307 (45%)
Query: 11 TVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRTQTSFEVAGKL 70
++ +L+ + V +++ N +
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQ---------------------------------- 365
Query: 71 LGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYS--GAVNSLMHKIKGPSI 128
V + +N N++V P S G +N + K K PS
Sbjct: 366 --VEISLVNG---------------------AKNLVVSGPPQSLYG-LNLTLRKAKAPS- 400
Query: 129 INAGDGTHEHP-SQALLDAFAIRHFKGKISN--L---------HIAICGDILHSRVARSD 176
G P S+ R K K SN L + D+++ + +++
Sbjct: 401 ---GLDQSRIPFSE--------R--KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 177 IMLLNTMGARIRVIAPITLLPKDISNMGVEVFH-----DMQKGLKNVDVIMILRMQQERI 231
++ KD + + V+ D++ ++
Sbjct: 448 ----------------VSFNAKD---IQIPVYDTFDGSDLRVLSGSI------------S 476
Query: 232 PRSLIPSIREYKHVYSLD-EKKLKYAKKDALVMHPGPI-------NRNYE------ISSS 277
R ++ I V E ++ L PG +RN + I +
Sbjct: 477 ER-IVDCIIR-LPV---KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Query: 278 VADGSQS 284
D +
Sbjct: 532 TLDINPD 538
Score = 36.1 bits (83), Expect = 0.011
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 73/229 (31%)
Query: 108 IRHPYSGAV-NSLMH-KIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICG 165
IR YS + +++ K+K I +EH + ++ R KG +S
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKE---INEHST-----SYTFRSEKGLLSATQFTQPA 1735
Query: 166 DILHSRVARSDIMLLNTMGARIRVIAPITLLPKDISNMGVEVFHDMQK--GLKNV-DVIM 222
L + A D L + G L+P D + G H + + L ++ DV+
Sbjct: 1736 LTLMEKAAFED---LKSKG----------LIPADATFAG----HSLGEYAALASLADVMS 1778
Query: 223 I-----------LRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAKKDALVMHPGPINRN 271
I + MQ +PR DE L + + ++PG + +
Sbjct: 1779 IESLVEVVFYRGMTMQVA-VPR---------------DE--LGRSNYGMIAINPGRVAAS 1820
Query: 272 YEISSSVADGSQSIIQYQVEMGVAVRMAIIKEL----LENQNKITQKEL 316
+ SQ +QY VE V R + E+ +ENQ + +L
Sbjct: 1821 F---------SQEALQYVVER-VGKRTGWLVEIVNYNVENQQYVAAGDL 1859
Score = 33.8 bits (77), Expect = 0.055
Identities = 33/227 (14%), Positives = 66/227 (29%), Gaps = 81/227 (35%)
Query: 134 GTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLLNTMGARIRVI--- 190
G + L F + +G DI H+ A+ T+ +I
Sbjct: 78 GQFDQVLNLCLTEFENCYLEGN----------DI-HALAAKLLQENDTTLVKTKELIKNY 126
Query: 191 -APITLLPKDISNMGV-EVFHDMQKGLKNVDVIMI-------------LRMQQERIP--- 232
+ + +F + +G N ++ I LR +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEG--NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 233 RSLIPSIREYKHVYSL-----DEKKLKYAKK-DALVM----HPGPI-NRNYEISSSVADG 281
LI E + L D +K+ + + + ++ +P +++Y +S +
Sbjct: 185 GDLIKFSAE--TLSELIRTTLDAEKV-FTQGLN--ILEWLENPSNTPDKDYLLSIPI--- 236
Query: 282 SQSII------QYQV----------EM------------GVAVRMAI 300
S +I Y V E+ G+ +AI
Sbjct: 237 SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI 283
>2px2_A Genome polyprotein [contains: capsid protein C (core protein);
envelope protein M...; methyltransferase, SAH; HET: SAH;
2.00A {Murray valley encephalitis virus} PDB: 2px4_A*
2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Length = 269
Score = 29.9 bits (67), Expect = 0.89
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 107 VIRHPYSGAVNSLMHKIKGP--SIINAGDGTHEHPSQALLDAFAIRHFKG 154
++R P S N M+ + G +I++A + T SQ L+ + +KG
Sbjct: 206 LVRVPLSRNSNHEMYWVSGASGNIVHAVNMT----SQVLIGRMDKKIWKG 251
>3nwr_A A rubisco-like protein; lyase; HET: KCX; 1.50A {Burkholderia
fungorum}
Length = 432
Score = 29.2 bits (65), Expect = 1.2
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 110 HPYSGAVNSLMHKIKGP-SIINAGDGTHEHP 139
G V + ++ + +G G HP
Sbjct: 360 WA--GTVQATFDAVRSTDLLFMSGGGILAHP 388
>3i1i_A Homoserine O-acetyltransferase; structural genomics, IDP01610,
center for structural genomics of infectious diseases,
csgid; HET: MSE; 2.44A {Bacillus anthracis str}
Length = 377
Score = 26.6 bits (58), Expect = 7.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 94 TIATLNALRPNIIVIRHPYSG 114
T TLN R N+I+I H +S
Sbjct: 33 TYGTLNRERSNVILICHYFSA 53
>2b61_A Homoserine O-acetyltransferase; acyl-enzyme, aspartate pathway,
coenzyme A, structure- function studies, alpha-beta
hydrolase fold; 1.65A {Haemophilus influenzae} SCOP:
c.69.1.40
Length = 377
Score = 26.7 bits (58), Expect = 7.4
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 94 TIATLNALRPNIIVIRHPYSG 114
T TLN + N ++I H +G
Sbjct: 50 TYGTLNDEKNNAVLICHALTG 70
>2pl5_A Homoserine O-acetyltransferase; alpha/beta hydrolase superfamily;
2.20A {Leptospira interrogans} SCOP: c.69.1.40
Length = 366
Score = 26.3 bits (57), Expect = 8.6
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 94 TIATLNALRPNIIVIRHPYSG 114
T TL++ + N I+I H SG
Sbjct: 37 TYGTLSSSKNNAILICHALSG 57
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.135 0.376
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,587,179
Number of extensions: 120461
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 32
Length of query: 316
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 224
Effective length of database: 3,462,782
Effective search space: 775663168
Effective search space used: 775663168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)