BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase
catalytic subunit [Candidatus Liberibacter asiaticus str. psy62]
(316 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
Liberibacter asiaticus str. psy62]
Length = 316
Score = 650 bits (1676), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/316 (100%), Positives = 316/316 (100%)
Query: 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRT 60
MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRT
Sbjct: 1 MYSFPLYNFVTVKDLSMQDVNYLLDRANEYFQKKSHFNPSTTRLQGLTQINLFLETSTRT 60
Query: 61 QTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLM 120
QTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLM
Sbjct: 61 QTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRPNIIVIRHPYSGAVNSLM 120
Query: 121 HKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLL 180
HKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLL
Sbjct: 121 HKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAICGDILHSRVARSDIMLL 180
Query: 181 NTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIR 240
NTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIR
Sbjct: 181 NTMGARIRVIAPITLLPKDISNMGVEVFHDMQKGLKNVDVIMILRMQQERIPRSLIPSIR 240
Query: 241 EYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI 300
EYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI
Sbjct: 241 EYKHVYSLDEKKLKYAKKDALVMHPGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAI 300
Query: 301 IKELLENQNKITQKEL 316
IKELLENQNKITQKEL
Sbjct: 301 IKELLENQNKITQKEL 316
>gi|255764473|ref|YP_003064846.2| ornithine carbamoyltransferase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 306
Score = 68.9 bits (167), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 116/277 (41%), Gaps = 38/277 (13%)
Query: 44 LQGLTQINLFLETSTRTQTSFEVAGKLLGVHVININTKNSAMKKGENIADTIATLNALRP 103
L G +F + STRT+ SFEVA K LG I ++ + + E I DT L+
Sbjct: 42 LSGKVLAMIFEKPSTRTRVSFEVAMKHLGGDTIFLSGSEMQLGRAETIGDTAKVLSRY-V 100
Query: 104 NIIVIRHPYSGAVNSLMHKIKGPSIINAGDGTHEHPSQALLDAFAIRHFKGKISNLHIAI 163
+ IV+R + L P I D T HP Q + D +G + +
Sbjct: 101 DAIVMRTTNHSRLLELTEYATVPVINALTDNT--HPCQIIADIMTFEEHRGSVKGKLFSW 158
Query: 164 CGD---ILHSRV---ARSDIMLLNTMGARIRVIAPITLLPKD-----ISNMG--VEVFHD 210
GD ILHS + AR + +L + PI P++ N G V +FHD
Sbjct: 159 SGDGNNILHSLIEGAARFNYLL--------NIATPIGSEPRNEYLNWARNQGASVALFHD 210
Query: 211 MQKGLKNVDVIM---ILRMQQERIPRSLIPSIREYKHV---YSLDEKKLKYAKKDALVMH 264
+ +K + + M QE R +HV + ++ + A DAL MH
Sbjct: 211 AVQAVKGAHCVFTDTWISMNQEFKARE--------EHVFQPFQVNLSLMSMAHPDALFMH 262
Query: 265 PGPINRNYEISSSVADGSQSIIQYQVEMGVAVRMAII 301
P +R E+ + V DG QS++ + E + + AI+
Sbjct: 263 CLPAHRGEEVINEVLDGPQSVVFDEAENRLHTQKAIL 299
>gi|254780321|ref|YP_003064734.1| GTP-binding protein LepA [Candidatus Liberibacter asiaticus str.
psy62]
Length = 606
Score = 26.2 bits (56), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
Query: 252 KLKYAKKDA------LVMHPGPINRNYEISSSVADGSQSIIQYQVEMGV-AVRMAIIKEL 304
+L Y DA L+ PG ++ YE+S S++ S++ GV A +A + +
Sbjct: 67 RLNYTSTDAKDYQLNLIDTPGHVDFTYEVSRSLSACEGSLLVVDATQGVEAQTLANVYQA 126
Query: 305 LENQNKI 311
++N ++I
Sbjct: 127 IDNNHEI 133
Score = 23.9 bits (50), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 4/84 (4%)
Query: 68 GKLLGVHVININ-TKNSAMK-KGENIADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKG 125
G ++ V +IN TK +++ G N + + L P +I I Y G + ++ IK
Sbjct: 214 GVMVLVRIINGQLTKGQSIRLMGTNAKYQVERIGILTPKMIDIEALYPGEIGVMIASIKE 273
Query: 126 PSIINAGDGTHEH--PSQALLDAF 147
S GD + P+ + L F
Sbjct: 274 VSHTRVGDTITDDSSPTTSALPGF 297
>gi|254780889|ref|YP_003065302.1| inosine 5'-monophosphate dehydrogenase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 493
Score = 26.2 bits (56), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 83 SAMKKGENI---ADTIATLNALRPNIIVIRHPYSGAVNSLMHKIKG 125
+AM++G + D + + L P I R PY G + S++H++ G
Sbjct: 396 AAMERGSSARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSG 441
>gi|254780644|ref|YP_003065057.1| hypothetical protein CLIBASIA_02655 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 289
Score = 25.4 bits (54), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 174 RSDIMLLNTMGARIRVIAPITL-LPKDISNMGVEVFHDMQKGLK 216
R+DIMLL G ++++ +T K I+N+ ++ D K +K
Sbjct: 153 RNDIMLLTKYGESLQILRRLTQETEKHINNLQDKILQDRAKEIK 196
>537021.9.peg.789_1
Length = 143
Score = 24.3 bits (51), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 174 RSDIMLLNTMGARIRVIAPI 193
R DI +L TMGARI I I
Sbjct: 28 RRDIAILRTMGARISSIMSI 47
>gi|254780670|ref|YP_003065083.1| phosphopyruvate hydratase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 424
Score = 23.9 bits (50), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 203 MGVEVFHDMQKGLKN 217
MG EVFH ++K LK+
Sbjct: 179 MGAEVFHTLKKELKS 193
>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1246
Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 215 LKNVDVIMILRMQQERIPRSLIPSIREYKHVYSLDEKKLKYAK 257
L+ ++I RMQ E + S +E+K + S DE K ++ K
Sbjct: 577 LRVAEIIQQSRMQSEDLQEKAWDSYKEWKSL-SPDEIKQRFQK 618
>gi|254781212|ref|YP_003065625.1| hypothetical protein CLIBASIA_05595 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 109
Score = 22.7 bits (47), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 239 IREYKHVYSLDEKKL 253
IR YKHVYS E +
Sbjct: 38 IRHYKHVYSTPEGRF 52
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.135 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 192,245
Number of Sequences: 1233
Number of extensions: 7740
Number of successful extensions: 26
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 11
length of query: 316
length of database: 328,796
effective HSP length: 74
effective length of query: 242
effective length of database: 237,554
effective search space: 57488068
effective search space used: 57488068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)