RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] (431 letters) >gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated. Length = 429 Score = 492 bits (1268), Expect = e-139 Identities = 198/426 (46%), Positives = 284/426 (66%), Gaps = 3/426 (0%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 +L N RIIDPSR +DE+G +++E+G+I+AAG A N P A I DC G PG++DA Sbjct: 6 LLANARIIDPSRGLDEIGTVLIEDGVIVAAGKGAGNQGAPEGAEIVDCAGKAVAPGLVDA 65 Query: 65 RVTLTGSP-DEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSL 123 RV G P E+ + I + S+ A AGG+TSII+MP +D+ +++ R ++ Sbjct: 66 RV-FVGEPGAEHRETIASASRAAAAGGVTSIIMMP-DTDPVIDDVALVEFVKRTARDTAI 123 Query: 124 INVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVA 183 +N++P A +T + G+E++E LL+ G V+F S+ +TQV+ ++ YA +A++ Sbjct: 124 VNIHPAAAITKGLAGEEMTEFGLLRAAGAVAFTDGRRSVANTQVMRRALTYARDFDAVIV 183 Query: 184 LDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQ 243 +T D LG GV+NEG+ A++LGL GIP +E +PL RDL +A T G YHA+ IS + Sbjct: 184 HETRDPDLGGNGVMNEGLFASWLGLSGIPREAEVIPLERDLRLAALTRGRYHAAQISCAE 243 Query: 244 SIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKG 303 S ++ AK K T G+SIN+L LNEND+ Y + K+ PPLR+E +R++MVEA+ G Sbjct: 244 SAEALRRAKDRGLKVTAGVSINHLSLNENDIGEYRTFFKLSPPLRTEDDRVAMVEAVASG 303 Query: 304 DIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRP 363 IDIIVS H P+ +DTK LPF+EA+ G+IGLET+L+AALRL+H ++ L +LI ALSTRP Sbjct: 304 TIDIIVSSHDPQDVDTKRLPFSEAAAGAIGLETLLAAALRLYHNGEVPLLRLIEALSTRP 363 Query: 364 AQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISG 423 A+IF LP GTL+ G ADI +IDL+ W V +D+ S KNT F++ F G+VVRT ++G Sbjct: 364 AEIFGLPAGTLKPGAPADIIVIDLDEPWVVDPEDLKSRSKNTPFEEARFQGRVVRTIVAG 423 Query: 424 KQVYTL 429 K VY L Sbjct: 424 KTVYEL 429 >gnl|CDD|181796 PRK09357, pyrC, dihydroorotase; Validated. Length = 423 Score = 316 bits (813), Expect = 6e-87 Identities = 150/427 (35%), Positives = 236/427 (55%), Gaps = 7/427 (1%) Query: 2 TSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGI 61 ++ N R+IDP +DEV +++++G I A G + A + D TGLV PG+ Sbjct: 1 MMILIKNGRVIDPK-GLDEVADVLIDDGKIAAIGENI----EAEGAEVIDATGLVVAPGL 55 Query: 62 IDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVK 121 +D V L E + I T S+ A AGG T+++ MP +D ++Y L+ + Sbjct: 56 VDLHVHLREPGQEDKETIETGSRAAAAGGFTTVVAMP-NTKPVIDTPEVVEYVLDRAKEA 114 Query: 122 SLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAI 181 L++V P +T + G+E++E L+E G+V+F + + D +++ +++YA L+ + Sbjct: 115 GLVDVLPVGAITKGLAGEELTEFGALKEAGVVAFSDDGIPVQDARLMRRALEYAKALDLL 174 Query: 182 VALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISI 241 +A D L GV+NEG ++ LGL GIP+++E V +ARD+L+A+ TG H +S Sbjct: 175 IAQHCEDPSLTEGGVMNEGEVSARLGLPGIPAVAEEVMIARDVLLAEATGARVHICHVST 234 Query: 242 PQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALE 301 S+ LI+ AKA K T ++ ++L+L + D+ Y+ KV PPLR+E +R +++E L+ Sbjct: 235 AGSVELIRWAKALGIKVTAEVTPHHLLLTDEDLLTYDPNYKVNPPLRTEEDREALIEGLK 294 Query: 302 KGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAAL-RLFHGQQISLKKLIRALS 360 G ID I +DH P + K F A FG GLET LS L + L++L+ ++ Sbjct: 295 DGTIDAIATDHAPHAREEKECEFEAAPFGITGLETALSLLYTTLVKTGLLDLEQLLEKMT 354 Query: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY 420 PA+I LP G L G AD+ + D +WTV +D +S KNT F GKVV T Sbjct: 355 INPARILGLPAGPLAEGEPADLVIFDPEAEWTVDGEDFASKGKNTPFIGMKLKGKVVYTI 414 Query: 421 ISGKQVY 427 + GK VY Sbjct: 415 VDGKIVY 421 >gnl|CDD|181059 PRK07627, PRK07627, dihydroorotase; Provisional. Length = 425 Score = 266 bits (683), Expect = 6e-72 Identities = 143/420 (34%), Positives = 219/420 (52%), Gaps = 4/420 (0%) Query: 8 NTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67 R+IDP+ D + V G I A G A F I D +GL+ PG++D Sbjct: 7 GGRLIDPAAGTDRQADLYVAAGKIAAIGQAP--AGFNADKTI-DASGLIVCPGLVDLSAR 63 Query: 68 LTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLINVY 127 L EY + + AVAGG+TS++ P LDE ++ R + +VY Sbjct: 64 LREPGYEYKATLESEMAAAVAGGVTSLVCPP-DTDPVLDEPGLVEMLKFRARNLNQAHVY 122 Query: 128 PTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTH 187 P LT ++G+ ++EM L E G V F Q+ + + DTQVLL +++YA V L Sbjct: 123 PLGALTVGLKGEVLTEMVELTEAGCVGFSQANVPVVDTQVLLRALQYASTFGFTVWLRPL 182 Query: 188 DHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIAL 247 D FLG GV G +A+ LGL G+P +ET+ L + + TG H + +S +AL Sbjct: 183 DAFLGRGGVAASGAVASRLGLSGVPVAAETIALHTIFELMRVTGARVHLARLSSAAGVAL 242 Query: 248 IKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDI 307 ++ AKA TC + +N++ L + D+ ++S ++ PPLRS+ +R ++ AL G ID Sbjct: 243 VRAAKAEGLPVTCDVGVNHVHLIDVDIGYFDSQFRLDPPLRSQRDREAIRAALADGTIDA 302 Query: 308 IVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIF 367 I SDHTP D KLLPFAEA+ G+ GLE +L L+ ++ L + + +++ PA++ Sbjct: 303 ICSDHTPVDDDEKLLPFAEATPGATGLELLLPLTLKWADEAKVPLARALARITSAPARVL 362 Query: 368 NLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427 LP G L G AD+ + D + W V+ + S KNT F G+V T ++G+ + Sbjct: 363 GLPAGRLAEGAPADLCVFDPDAHWRVEPRALKSQGKNTPFLGYELPGRVRATLVAGQVAF 422 >gnl|CDD|162070 TIGR00857, pyrC_multi, dihydroorotase, multifunctional complex type. All proteins described by this model should represent active and inactive dihydroorotase per se and functionally equivalent domains of multifunctional proteins from higher eukaryotes, but exclude related proteins such as allantoinase. Length = 411 Score = 266 bits (681), Expect = 9e-72 Identities = 150/410 (36%), Positives = 219/410 (53%), Gaps = 8/410 (1%) Query: 22 GAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITT 81 I+VE G I G + P A + D GL+ +PG ID V L +EY ++I + Sbjct: 6 VDILVEGGRIKKIGKLRI----PPDAEVIDAKGLLVLPGFIDLHVHLRDPGEEYKEDIES 61 Query: 82 LSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEI 141 SK A GG T++ MP +D +++ L+ ++ SL++V+ +T +GKE+ Sbjct: 62 GSKAAAHGGFTTVADMP-NTKPPIDTPETLEWKLQRLKKVSLVDVHLYGGVTQGNQGKEL 120 Query: 142 SEMRLLQEQGIV--SFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINE 199 +E L+E G V F + D + +++YA + +AL D L GV++E Sbjct: 121 TEAYELKEAGAVGRMFTDDGSEVQDILSMRRALEYAAIAGVPIALHAEDPDLIYGGVMHE 180 Query: 200 GIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKAT 259 G A LGL P +E V +AR L +A+H G H IS +S+ LI AK+ K T Sbjct: 181 GPSAAQLGLPARPPEAEEVAVARLLELAKHAGCPVHICHISTKESLELIVKAKSQGIKIT 240 Query: 260 CGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDT 319 ++ ++L+L+E DV + KV PPLR + +R++++E L+ G IDII +DH P ++ Sbjct: 241 AEVTPHHLLLSEEDVARLDGNGKVNPPLREKEDRLALIEGLKDGIIDIIATDHAPHTLEE 300 Query: 320 KLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGT 378 K FA A G GLET L L+L ISLK LIR LS PA+IF LP GTL+ G Sbjct: 301 KTKEFAAAPPGIPGLETALPLLLQLLVKGLISLKDLIRMLSINPARIFGLPDKGTLEEGN 360 Query: 379 AADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVYT 428 ADI + DL +WT+ A+ S KNT F+ GK + T + GK VY Sbjct: 361 PADITVFDLKKEWTINAETFYSKAKNTPFEGMSLKGKPIATILRGKVVYE 410 >gnl|CDD|181418 PRK08417, PRK08417, dihydroorotase; Provisional. Length = 386 Score = 199 bits (507), Expect = 1e-51 Identities = 116/408 (28%), Positives = 194/408 (47%), Gaps = 27/408 (6%) Query: 24 IIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYS-KNITTL 82 I +++G I G+D + I D G +P ++D V+L D S KN+ +L Sbjct: 1 IRIKDGKITEIGSDLKGEE------ILDAKGKTLLPALVDLNVSLKN--DSLSSKNLKSL 52 Query: 83 SKEAVAGGITSIILMPLGMSSFLDEYT--FIKYALEEIRVKSLINVYPTACLTSNMEGKE 140 E + GG+ SI+L P + +E I A E+ + ++P+ E + Sbjct: 53 ENECLKGGVGSIVLYPDSTPAIDNEIALELINSAQRELP----MQIFPSIRALD--EDGK 106 Query: 141 ISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEG 200 +S + L ++G + S S D +L +YA ML+ + D GV+N+G Sbjct: 107 LSNIATLLKKGAKALELS--SDLDANLLKVIAQYAKMLDVPIFCRCEDSSFDDSGVMNDG 164 Query: 201 IIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATC 260 ++ LGL GIPSI+ET +A+ +A+ +++P+S+ L+ K+ K Sbjct: 165 ELSFELGLPGIPSIAETKEVAKMKELAKFYKNKVLFDTLALPRSLELLDKFKSEGEKLLK 224 Query: 261 GISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTK 320 +SI++LIL+++ E +N+ K+ PPLRS+ +R++++EAL++G ID + S H+ + K Sbjct: 225 EVSIHHLILDDSACENFNTAAKLNPPLRSKEDRLALLEALKEGKIDFLTSLHSAKSNSKK 284 Query: 321 LLPFAEASFGSIGLETMLSAALRLFHGQQ-ISLKKLIRALSTRPAQIFNLPGGTLQTGTA 379 L F EA+FG + S + I+ +L R S PAQ L G ++ G Sbjct: 285 DLAFDEAAFGIDSICEYFSLCYTYLVKEGIITWSELSRFTSYNPAQFLGLNSGEIEVGKE 344 Query: 380 ADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427 AD+ L D N DD S++ GK+ I GK Sbjct: 345 ADLVLFDPNES--TIIDDNFSLYSGDELY-----GKIEAVIIKGKLYL 385 >gnl|CDD|180948 PRK07369, PRK07369, dihydroorotase; Provisional. Length = 418 Score = 196 bits (500), Expect = 1e-50 Identities = 125/424 (29%), Positives = 210/424 (49%), Gaps = 9/424 (2%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 M++ +L R++DP + D + +++E+G I A P I D +GL+ PG Sbjct: 1 MSNELLQQVRVLDPVSNTDRIADVLIEDGKIQAIEPHI--DPIPPDTQIIDASGLILGPG 58 Query: 61 IIDARVTLTGSP-DEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIR 119 ++D +G P E + + +L+ A AGG T + ++P LD + ++ + Sbjct: 59 LVDLYSH-SGEPGFEERETLASLAAAAAAGGFTRVAILPDT-FPPLDNPATLARLQQQAQ 116 Query: 120 VKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLN 179 + ++ LT +GK+++E+ L G+V F + + +L ++Y L Sbjct: 117 QIPPVQLHFWGALTLGGQGKQLTELAELAAAGVVGFTDG-QPLENLALLRRLLEYLKPLG 175 Query: 180 AIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVI 239 VAL D L GV+ EG++A LGL G P+ +ET LA L + G H I Sbjct: 176 KPVALWPCDRSLAGNGVMREGLLALRLGLPGDPASAETTALAALLELVAAIGTPVHLMRI 235 Query: 240 SIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYN-SLRKVLPPLRSETERMSMVE 298 S +S+ LI AKA T + +L+L+ + Y+ +LR + PPL + ++R +++E Sbjct: 236 STARSVELIAQAKARGLPITASTTWMHLLLDTEALASYDPNLR-LDPPLGNPSDRQALIE 294 Query: 299 ALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAAL-RLFHGQQISLKKLIR 357 + G ID I DH P + K + FAEA G+IGLE L L ++S +L + Sbjct: 295 GVRTGVIDAIAIDHAPYTYEEKTVAFAEAPPGAIGLELALPLLWQNLVETGELSALQLWQ 354 Query: 358 ALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVV 417 ALST PA+ +L G A++ L D WTV A + S+ +NT + + G+V+ Sbjct: 355 ALSTNPARCLGQEPPSLAPGQPAELILFDPQKTWTVSAQTLHSLSRNTPWLGQTLKGRVL 414 Query: 418 RTYI 421 +T++ Sbjct: 415 QTWV 418 >gnl|CDD|163175 TIGR03178, allantoinase, allantoinase. This enzyme carries out the first step in the degradation of allantoin, a ring-opening hydrolysis. The seed members of this model are all in the vicinity of other genes involved in the processes of xanthine/urate/allantoin catabolism. Although not included in the seed, many eukaryotic homologs of this family are included above the trusted cutoff. Below the noise cutoff are related hydantoinases. Length = 443 Score = 152 bits (386), Expect = 1e-37 Identities = 117/446 (26%), Positives = 185/446 (41%), Gaps = 37/446 (8%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 ++ R+I P+ + + V+ G I A G D L +A I D GLV PG++D Sbjct: 3 IIRGGRVILPNGE--READVGVKGGKIAAIGPDIL----GPAAKIIDAGGLVVFPGVVDT 56 Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124 V + + T ++ A AGGIT+ I MPL ++ E + K + Sbjct: 57 HVHINEPGRTEWEGFETGTRAAAAGGITTYIDMPLNSIPATTTRASLEAKFEAAKGKLAV 116 Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSF--IQSPMSIH-----DTQVLLNSMKYAHM 177 +V L + ++R L E G+V F SP D L M+ Sbjct: 117 DVGFWGGLVP----YNLDDLRELDEAGVVGFKAFLSPSGDDEFPHVDDWQLYKGMRELAR 172 Query: 178 LNAIVALDTHDHFLGSRGVINEGIIANYLGLVGI-------PSISETVPLARDLLIAQHT 230 L ++ + + + S G A G VG P +E + R L +A+ T Sbjct: 173 LGQLLLVHAENPAITSA----LGEEAPPQGGVGADAYLASRPVFAEVEAIRRTLALAKVT 228 Query: 231 GGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSE 290 G H +S +++ LI AK T + L L +V +L K PP+R Sbjct: 229 GCRVHVVHLSSAEAVELITEAKQEGLDVTVETCPHYLTLTAEEVPDGGTLAKCAPPIRDL 288 Query: 291 TERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSI-----GLETMLSAALRLF 345 + + EAL G ID +VSDH+P D K ++G I L+ M A Sbjct: 289 ANQEGLWEALLNGLIDCVVSDHSPCTPDLKRAGDFFKAWGGIAGLQSTLDVMFDEA---V 345 Query: 346 HGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKN 404 + + L+ + R ++T PA+ F L G + G AD +D + +T+ DD+ HK Sbjct: 346 QKRGLPLEDIARLMATNPAKRFGLAQKGRIAPGKDADFVFVDPDESYTLTPDDLYYRHKV 405 Query: 405 TVFDKEFFTGKVVRTYISGKQVYTLE 430 + + G+V TY+ G+ +Y E Sbjct: 406 SPYVGRTIGGRVRATYLRGQCIYDDE 431 >gnl|CDD|180455 PRK06189, PRK06189, allantoinase; Provisional. Length = 451 Score = 152 bits (386), Expect = 2e-37 Identities = 123/426 (28%), Positives = 186/426 (43%), Gaps = 33/426 (7%) Query: 24 IIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITTLS 83 I ++NG I A A +++ P +I D GL PG+ID V + + T S Sbjct: 23 IGIKNGKI-AEIAPEISS--PAREII-DADGLYVFPGMIDVHVHFNEPGRTHWEGFATGS 78 Query: 84 KEAVAGGITSIILMPL-GMSSFLDEYTFIKYALEEIRVKSLINVYPTACLTSNMEGKEIS 142 AGG T+ MPL + + A E R KS ++ L + Sbjct: 79 AALAAGGCTTYFDMPLNSIPPTVTREALDAKA-ELARQKSAVDFALWGGLVPG----NLE 133 Query: 143 EMRLLQEQGIVSFIQSPMS--------IHDTQVLLNSMKYAHMLNAIVAL----DTHDHF 190 +R L E G++ F ++ MS D L MK L I+AL D Sbjct: 134 HLRELAEAGVIGF-KAFMSNSGTDEFRSSDDLTLYEGMKEIAALGKILALHAESDALTRH 192 Query: 191 LGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIKH 250 L + +G L P ++E + R LL AQ TG H IS +++ALI Sbjct: 193 L-TTQARQQGKTDVRDYLESRPVVAELEAVQRALLYAQETGCPLHFVHISSGKAVALIAE 251 Query: 251 AKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVS 310 AK + + L+ E D E ++ K PPLRS +++ + L G+ID+I S Sbjct: 252 AKKRGVDVSVETCPHYLLFTEEDFERIGAVAKCAPPLRSRSQKEELWRGLLAGEIDMISS 311 Query: 311 DHTPRHMDTKLLPFAEASFGSIG-----LETMLSAALRLFHGQQISLKKLIRALSTRPAQ 365 DH+P + K +G I L ML+ + + I L+ + R L+T PA+ Sbjct: 312 DHSPCPPELKEGDDFFLVWGGISGGQSTLLVMLTEG---YIERGIPLETIARLLATNPAK 368 Query: 366 IFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGK 424 F LP G L+ G AD L+DL+ +T+ +D+ HK + ++ F G+VV TY+ G+ Sbjct: 369 RFGLPQKGRLEVGADADFVLVDLDETYTLTKEDLFYRHKQSPYEGRTFPGRVVATYLRGQ 428 Query: 425 QVYTLE 430 VY Sbjct: 429 CVYQDG 434 >gnl|CDD|179801 PRK04250, PRK04250, dihydroorotase; Provisional. Length = 398 Score = 119 bits (299), Expect = 2e-27 Identities = 108/424 (25%), Positives = 177/424 (41%), Gaps = 48/424 (11%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 L RI++ G I +ENG I L K +I G++ +PG+ID Sbjct: 6 FLLKGRIVE--------GGIGIENGRISKISLRDLKGK----EVIKVKGGII-LPGLIDV 52 Query: 65 RVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRVKSLI 124 V L + Y + I + +K A+ GGIT + MP +DE T+ K + KS Sbjct: 53 HVHLRDFEESYKETIESGTKAALHGGITLVFDMPNTKPPIMDEKTYEK-RMRIAEKKSYA 111 Query: 125 NVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMK--YAHMLNAIV 182 + Y L + K + + + + + + YA IV Sbjct: 112 D-YALNFLIAGNCEKAEEIKADFYKIFMGAST--------GGIFSENFEVDYACAPG-IV 161 Query: 183 ALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIP 242 ++ D +I + P +E V + R L + H IS Sbjct: 162 SVHAEDP----------ELIREFPER---PPEAEVVAIERALEAGKKLKKPLHICHISTK 208 Query: 243 QSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEK 302 + LI K++ + ++ ++L L D E N L KV PPLRSE +R ++ E K Sbjct: 209 DGLKLIL--KSNLPWVSFEVTPHHLFLTRKDYER-NPLLKVYPPLRSEEDRKALWENFSK 265 Query: 303 GDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTR 362 I II SDH P ++ K + G GLET + L + ISL ++ + Sbjct: 266 --IPIIASDHAPHTLEDK----EAGAAGIPGLETEVPLLLDAANKGMISLFDIVEKMHDN 319 Query: 363 PAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYIS 422 PA+IF + ++ G A+ A+ D+ +WT+KA+++ + T ++ GKV+ T + Sbjct: 320 PARIFGIKNYGIEEGNYANFAVFDMKKEWTIKAEELYTKAGWTPYEGFKLKGKVIMTILR 379 Query: 423 GKQV 426 G+ V Sbjct: 380 GEVV 383 >gnl|CDD|179417 PRK02382, PRK02382, dihydroorotase; Provisional. Length = 443 Score = 117 bits (295), Expect = 5e-27 Identities = 102/409 (24%), Positives = 176/409 (43%), Gaps = 26/409 (6%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 M +L + R+ + + + ++ G I A G D +S + D G++ +PG Sbjct: 1 MRDALLKDGRV--YYNNSLQPRDVRIDGGKITAVGKDL---DGSSSEEVIDARGMLLLPG 55 Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120 ID V + + T S+ A AGG+T+++ P +D +F E Sbjct: 56 GIDVHVHFREPGYTHKETWYTGSRSAAAGGVTTVVDQPNTDPPTVDGESF-DEKAELAAR 114 Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQ-------SPMSIHDTQVLLNSMK 173 KS+++ +T N + E L E+G+ + + M I D ++ ++ Sbjct: 115 KSIVDFGINGGVTGNWDPLE-----SLWERGVFALGEIFMADSTGGMGI-DEELFEEALA 168 Query: 174 YAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGI-PSISETVPLARDLLIAQHTGG 232 A L + + D L A+ P+ +E + R L +A TG Sbjct: 169 EAARLGVLATVHAEDEDLFDELAKLLKGDADADAWSAYRPAAAEAAAVERALEVASETGA 228 Query: 233 HYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETE 292 H + IS P+ + + TC ++ ++L L+ D E + K+ PPLRSE Sbjct: 229 RIHIAHISTPEGVDAAR-----REGITCEVTPHHLFLSRRDWERLGTFGKMNPPLRSEKR 283 Query: 293 RMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISL 352 R ++ E L G ID++ SDH P + K +A G G+ETML L ++ L Sbjct: 284 REALWERLNDGTIDVVASDHAPHTREEKDADIWDAPSGVPGVETMLPLLLAAVRKNRLPL 343 Query: 353 KKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSS 400 +++ + PA+IF L G G + G AD+ L+D + ++ DD+ S Sbjct: 344 ERVRDVTAANPARIFGLDGKGRIAEGYDADLVLVDPDAAREIRGDDLHS 392 >gnl|CDD|169193 PRK08044, PRK08044, allantoinase; Provisional. Length = 449 Score = 112 bits (282), Expect = 1e-25 Identities = 105/451 (23%), Positives = 184/451 (40%), Gaps = 50/451 (11%) Query: 7 NNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARV 66 N T I++ + ++ V+ G I A G D + + D +GLV PG++DA Sbjct: 9 NGTVILENEARVVDIA---VKGGKIAAIGQD-----LGDAKEVMDASGLVVSPGMVDAHT 60 Query: 67 TLTGSPDEYSKNITTLSKEAVAGGITSIILMPLG-MSSFLDEYTF-IKYALEE----IRV 120 ++ + + T ++ A GGIT++I MPL + + +D + +K+ + I Sbjct: 61 HISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDA 120 Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSF-----------IQSP-MSIHDTQVL 168 L + + + L E G+V F I + ++D Q Sbjct: 121 AQLGGLVSY----------NLDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQ-F 169 Query: 169 LNSMKYAHMLNAIVALDTHDHF----LGSRGVINEGIIANYLGLVGIPSISETVPLARDL 224 + L V + + LG EG + + + P +E + R L Sbjct: 170 YKGAQKLGELGQPVLVHCENALICDELGEEAK-REGRVTAHDYVASRPVFTEVEAIRRVL 228 Query: 225 LIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVL 284 +A+ G H IS P+ + + A+ TC + +L+ + E +L K Sbjct: 229 YLAKVAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCS 288 Query: 285 PPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLET----MLSA 340 PP+R + M E L G+ID +VSDH+P + K EA G GL+ M Sbjct: 289 PPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMEAWGGIAGLQNCMDVMFDE 348 Query: 341 ALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMS 399 A++ + +SL + ++T A IF L G + G AD I N + +K +D+ Sbjct: 349 AVQ---KRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLKNEDLE 405 Query: 400 SIHKNTVFDKEFFTGKVVRTYISGKQVYTLE 430 HK + + ++ +T + G +Y +E Sbjct: 406 YRHKVSPYVGRTIGARITKTILRGDVIYDIE 436 >gnl|CDD|178392 PLN02795, PLN02795, allantoinase. Length = 505 Score = 98.7 bits (246), Expect = 3e-21 Identities = 121/459 (26%), Positives = 191/459 (41%), Gaps = 47/459 (10%) Query: 2 TSFVLNNTRIIDPSRDIDEVGAIIVENGIILA-AGADALNAKFPTSALIHDCTGLVAVPG 60 FVL + R++ P+ I GA+ VE G I++ + ++ D V +PG Sbjct: 44 PHFVLYSKRVVTPAGVI--PGAVEVEGGRIVSVTKEEEAPKSQKKPHVL-DYGNAVVMPG 100 Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPL-GMSSFLDEYTFIKYALEEIR 119 +ID V L + T +K A AGGIT+++ MPL S T + +E + Sbjct: 101 LIDVHVHLNEPGRTEWEGFPTGTKAAAAGGITTLVDMPLNSFPSTTSVETL-ELKIEAAK 159 Query: 120 VKSLINVYPTACLTSNMEGKEISEMRLLQEQGIV---SFIQSPMSIHDTQVLLNSMKYAH 176 K ++V L LL + G + SF+ P I+D H Sbjct: 160 GKLYVDVGFWGGLVPENAHNASVLEELL-DAGALGLKSFM-CPSGIND----FPMTTATH 213 Query: 177 MLNAIVALDTHDHFL------GSRGVINEGIIAN---YLGLVGIPSISETVPLARDLL-I 226 + A+ L + L S + + A+ Y + S R LL + Sbjct: 214 IKAALPVLAKYGRPLLVHAEVVSPVESDSRLDADPRSYSTYLKSRPPSWEQEAIRQLLEV 273 Query: 227 AQHT-------GGHYHASVIS-IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYN 278 A+ T G H H +S S+ LIK AKA T + L + ++ + Sbjct: 274 AKDTRPGGVAEGAHVHIVHLSDAESSLELIKEAKAKGDSVTVETCPHYLAFSAEEIPDGD 333 Query: 279 SLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLP---FAEASFGSIGLE 335 + K PP+R R + +AL GDID++ SDH+P D KLL F A G L+ Sbjct: 334 TRYKCAPPIRDAANRELLWKALLDGDIDMLSSDHSPSPPDLKLLEEGNFLRAWGGISSLQ 393 Query: 336 TMLSAALRLFHGQQ--ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWT 392 +L A G+ ++L++L R S RPA++ L G + G ADI + D ++ Sbjct: 394 FVLPATWT--AGRAYGLTLEQLARWWSERPAKLAGLDSKGAIAPGKDADIVVWDPEAEFV 451 Query: 393 VKADDMSSI-HKNTVFDKEF---FTGKVVRTYISGKQVY 427 + D+ I HK+ +GKV+ T++ G V+ Sbjct: 452 L--DESYPIYHKHKSLSPYLGTKLSGKVIATFVRGNLVF 488 >gnl|CDD|181042 PRK07575, PRK07575, dihydroorotase; Provisional. Length = 438 Score = 85.9 bits (213), Expect = 2e-17 Identities = 52/174 (29%), Positives = 95/174 (54%), Gaps = 9/174 (5%) Query: 259 TCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMD 318 T ++ +L+LN + E +L ++ PPLRS + ++ +AL G ID I +DH P ++ Sbjct: 251 TAEVTPQHLLLNTDAYERIGTLAQMNPPLRSPEDNEALWQALRDGVIDFIATDHAPHTLE 310 Query: 319 TKLLPFAEASFGSIGLET----MLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GT 373 K P+ + G G+ET ML+AA+R + ++ +++R +ST A+ + +P G Sbjct: 311 EKAQPYPNSPSGMPGVETSLPLMLTAAMR----GKCTVAQVVRWMSTAVARAYGIPNKGR 366 Query: 374 LQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTYISGKQVY 427 + G AD+ L+DLN V+ +++ + + F+ TG V T + G+ V+ Sbjct: 367 IAPGYDADLVLVDLNTYRPVRREELLTKCGWSPFEGWNLTGWPVTTIVGGQIVF 420 Score = 51.2 bits (123), Expect = 5e-07 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 4/98 (4%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 M S ++ N RI+ PS ++ +G ++VE+G I+A + + D GL +PG Sbjct: 2 MMSLLIRNARILLPSGELL-LGDVLVEDGKIVAIAPEISA---TAVDTVIDAEGLTLLPG 57 Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMP 98 +ID +V E+ +++ T S+ GG+TS + MP Sbjct: 58 VIDPQVHFREPGLEHKEDLFTASRACAKGGVTSFLEMP 95 >gnl|CDD|181716 PRK09236, PRK09236, dihydroorotase; Reviewed. Length = 444 Score = 84.9 bits (211), Expect = 3e-17 Identities = 55/202 (27%), Positives = 107/202 (52%), Gaps = 1/202 (0%) Query: 227 AQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPP 286 A+ G H IS + ++L ++ + T + +++L +++D +L K P Sbjct: 225 AKKHGTRLHVLHISTAKELSLFENGPLAEKRITAEVCVHHLWFDDSDYARLGNLIKCNPA 284 Query: 287 LRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFH 346 +++ ++R ++ +AL ID+I +DH P + K P+ +A G ++ L A L L H Sbjct: 285 IKTASDREALRQALADDRIDVIATDHAPHTWEEKQGPYFQAPSGLPLVQHALPALLELVH 344 Query: 347 GQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKNT 405 ++SL+K++ S PA +F++ G ++ G AD+ L+DLN WTV +++ + Sbjct: 345 EGKLSLEKVVEKTSHAPAILFDIKERGFIREGYWADLVLVDLNSPWTVTKENILYKCGWS 404 Query: 406 VFDKEFFTGKVVRTYISGKQVY 427 F+ F +V T+++G+ VY Sbjct: 405 PFEGRTFRSRVATTFVNGQLVY 426 Score = 47.9 bits (115), Expect = 5e-06 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 19/105 (18%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGII--LAAGADALNAKFPTSALIHDCTGLVAV 58 M ++ N RI++ + + G +++ENG I +A+ A +A + D G + Sbjct: 1 MKRILIKNARIVNEGKIFE--GDVLIENGRIAKIASSISAKSA-----DTVIDAAGRYLL 53 Query: 59 PGIIDARV-----TLTGSPDEYSKNITTLSKEAVAGGITSIILMP 98 PG+ID +V LT + +I + S+ AVAGGITS + MP Sbjct: 54 PGMIDDQVHFREPGLT-----HKGDIASESRAAVAGGITSFMEMP 93 >gnl|CDD|178990 PRK00369, pyrC, dihydroorotase; Provisional. Length = 392 Score = 82.9 bits (205), Expect = 2e-16 Identities = 73/339 (21%), Positives = 134/339 (39%), Gaps = 48/339 (14%) Query: 54 GLVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKY 113 G + +PG ID V L G Y +++ + + EA GG+T + MP L+ I Sbjct: 42 GTLILPGAIDLHVHLRGLKLSYKEDVASGTSEAAYGGVTLVADMP-NTIPPLNTPEAITE 100 Query: 114 ALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMK 173 L E+ S ++ + + +T + E ++ ++ I + P + + +K Sbjct: 101 KLAELEYYSRVDYFVYSGVTKDPE--KVDKL------PIAGYKIFPEDLEREETFRVLLK 152 Query: 174 YAHMLNAIVALDTHDHFLGSRGVIN----EGIIANYLGLVGIPSISETVPLARDLLIAQH 229 + L I+ + +R + E Y+ Sbjct: 153 -SRKL-KILHPEVPLALKSNRKLRRNCWYEIAALYYV----------------------K 188 Query: 230 TGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRS 289 + H + S P+++ L K T I+ ++L++N + L KV PP+R Sbjct: 189 DYQNVHITHASNPRTVRLAK-----ELGFTVDITPHHLLVNGEK----DCLTKVNPPIRD 239 Query: 290 ETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQ 349 ER+ +++AL ++D I SDH P KL P+ G L L Sbjct: 240 INERLWLLQAL--SEVDAIASDHAPHSSFEKLQPYEVCPPGIAALSFTPPFIYTLVSKGI 297 Query: 350 ISLKKLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLN 388 +S+ + + +ST PA+I +P G ++ G A+ +I Sbjct: 298 LSIDRAVELISTNPARILGIPYGEIKEGYRANFTVIQFE 336 >gnl|CDD|162669 TIGR02033, D-hydantoinase, D-hydantoinase. This model represents the D-hydantoinase (dihydropyrimidinase) which primarily converts 5,6-dihydrouracil to 3-ureidopropanoate but also acts on dihydrothymine and hydantoin. The enzyme is a metalloenzyme. Length = 454 Score = 80.9 bits (200), Expect = 6e-16 Identities = 106/437 (24%), Positives = 179/437 (40%), Gaps = 53/437 (12%) Query: 24 IIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTL------TGSPDEYSK 77 +++E G I+A G N P + D TG +PG ID L T + D Sbjct: 19 VLIEGGKIVAVGR---NLSPPDAVEEIDATGKYVMPGGIDVHTHLEMPFGGTVTAD---- 71 Query: 78 NITTLSKEAVAGGITSIILM--PLGMSSFLDEY-TFIKYALEEIRVKSLINVYPTACLTS 134 + T +K A AGG T+II P S + T+ + A KS+I+ +T Sbjct: 72 DFFTGTKAAAAGGTTTIIDFALPHKGESLTEALETWHEKA----EGKSVIDYGFHMMITH 127 Query: 135 -NMEGKEISEMRLLQEQGIVSF-----IQSPMSIHDTQVLLNSMKYAHMLNAIVALDTHD 188 N E E + L E+GI SF ++ + + D + L +K A L A++ + + Sbjct: 128 WNDEVLE-EHIPELVEEGITSFKVFMAYKNLLMVDDEE-LFEILKRAKELGALLQVHAEN 185 Query: 189 HFLGSRGV---INEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSI 245 + + + +G + P SE +AR + +A + +S ++ Sbjct: 186 GDVIAELQARLLAQGKTGPEYHALSRPPESEAEAVARAIALAALANAPLYVVHVSTASAV 245 Query: 246 ALIKHAKAHNTKA---TC--GISINNLILNENDVEMYNSLRKVL-PPLRSETERMSMVEA 299 I A+ TC + +++ I ++ E + V PPLR + ++ ++ A Sbjct: 246 DEIAEAREKGQPVYGETCPQYLLLDDTIYDKPGFE---GAKYVCSPPLREKEDQDALWSA 302 Query: 300 LEKGDIDIIVSDHTPRHMDTKLL----PFAEASFGSIGLET----MLSAALRLFHGQQIS 351 L G + + SDH P + K F + G G+E + + +I+ Sbjct: 303 LSSGALQTVGSDHCPFNFAQKKAIGKDDFTKIPNGGPGVEERMTLLFDEGVA---TGRIT 359 Query: 352 LKKLIRALSTRPAQIFNL-P-GGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDK 409 L+K + ST PA+IFN+ P GT+ G+ ADI + D N + A+ F+ Sbjct: 360 LEKFVELTSTNPAKIFNMYPRKGTIAVGSDADIVIWDPNRTTVISAETHHDNADYNPFEG 419 Query: 410 EFFTGKVVRTYISGKQV 426 G VV G+ V Sbjct: 420 FKVQGAVVSVLSRGRVV 436 >gnl|CDD|181632 PRK09060, PRK09060, dihydroorotase; Validated. Length = 444 Score = 80.3 bits (199), Expect = 8e-16 Identities = 54/207 (26%), Positives = 104/207 (50%), Gaps = 5/207 (2%) Query: 222 RDLLIAQHTGGHYHASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDV-EMYNSL 280 R + +A+ TG H +S + I + K AT ++ ++L L + E +L Sbjct: 218 RLVRLARETGRRIHVLHVSTAEEIDFLADHK---DVATVEVTPHHLTLAAPECYERLGTL 274 Query: 281 RKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSA 340 ++ PP+R R + + +G +D++ SDH P ++ K P+ + G G++T++ Sbjct: 275 AQMNPPIRDARHRDGLWRGVRQGVVDVLGSDHAPHTLEEKAKPYPASPSGMTGVQTLVPI 334 Query: 341 ALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDLNYQWTVKADDMS 399 L + ++SL++ + S PA+IF + G G + G AD ++DL + T+ + ++ Sbjct: 335 MLDHVNAGRLSLERFVDLTSAGPARIFGIAGKGRIAVGYDADFTIVDLKRRETITNEWIA 394 Query: 400 SIHKNTVFDKEFFTGKVVRTYISGKQV 426 S T +D + TG V T + G++V Sbjct: 395 SRCGWTPYDGKEVTGWPVGTIVRGQRV 421 Score = 46.8 bits (112), Expect = 1e-05 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 10/83 (12%) Query: 16 RDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEY 75 DI I G + A A + DC GL +PG+ID++V E+ Sbjct: 23 ADIGIRDGRIAAIGDLSGASAGE----------VIDCRGLHVLPGVIDSQVHFREPGLEH 72 Query: 76 SKNITTLSKEAVAGGITSIILMP 98 +++ T S+ AV GG+T++ MP Sbjct: 73 KEDLETGSRAAVLGGVTAVFEMP 95 >gnl|CDD|181388 PRK08323, PRK08323, phenylhydantoinase; Validated. Length = 459 Score = 75.2 bits (186), Expect = 3e-14 Identities = 113/505 (22%), Positives = 188/505 (37%), Gaps = 155/505 (30%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 ++ N ++ +++E+G I A GA+ L + + D TG +PG ID Sbjct: 4 LIKNGTVVTADDTYK--ADVLIEDGKIAAIGAN-LGDE------VIDATGKYVMPGGIDP 54 Query: 65 RVTL------TGSPDEYSKNITTLSKEAVAGGITSII---LMPLGMSSFLDEYTFIKYAL 115 + T S D++ T ++ A GG T+II L P G S ++ AL Sbjct: 55 HTHMEMPFGGTVSSDDF----ETGTRAAACGGTTTIIDFALQPKGQS--------LREAL 102 Query: 116 EEIRVKSLINVYPTACLTSNMEGKEIS-----------------EMRLLQEQGIVSF--- 155 E K+ GK + EM L E+GI SF Sbjct: 103 EAWHGKA--------------AGKAVIDYGFHMIITDWNEVVLDEMPELVEEGITSFKLF 148 Query: 156 --IQSPMSIHDTQVLLNSMKYAHMLNAIVAL--DTHDHFLGSRGVINEGIIANYLGLVGI 211 + + + D + LL +++ A L A+ + + D I Sbjct: 149 MAYKGALMLDDDE-LLRALQRAAELGALPMVHAENGD-------AIAY------------ 188 Query: 212 PSISETVPLARDLLIAQHTGGHYH-------------------ASVISIP---------Q 243 L LL TG YH A + P + Sbjct: 189 --------LQAKLLAEGKTGPEYHALSRPPEVEGEATNRAIMLAELAGAPLYIVHVSCKE 240 Query: 244 SIALIKHAKAHNTKA---TCGISINNLILNENDVE---MYNSLRKVL-PPLRSETERMSM 296 ++ I+ A+A + TC L+L+E++ + + + V+ PPLR + + ++ Sbjct: 241 ALEAIRRARARGQRVFGETC---PQYLLLDESEYDGPDWFEGAKYVMSPPLRDKEHQDAL 297 Query: 297 VEALEKGDIDIIVSDHTPRHMDTKLL----PFAEASFGSIGLETMLSAALRLFHGQ---- 348 L+ GD+ ++ +DH P + K F + G+ G+E + L + Sbjct: 298 WRGLQDGDLQVVATDHCPFCFEQKKQLGRGDFTKIPNGTPGVEDRMP----LLFSEGVMT 353 Query: 349 -QISLKKLIRALSTRPAQIFNL-PG-GTLQTGTAADIALIDLNYQWTVKADDMSSIHKN- 404 +I+L + + ST PA+IF L P GT+ G ADI + D N T+ A + H N Sbjct: 354 GRITLNRFVELTSTNPAKIFGLYPRKGTIAVGADADIVIWDPNATKTISASTL---HSNV 410 Query: 405 --TVFDKEFFTGKVVRTYISGKQVY 427 ++ TG V T G+ V Sbjct: 411 DYNPYEGFEVTGWPVTTLSRGEVVV 435 >gnl|CDD|179247 PRK01211, PRK01211, dihydroorotase; Provisional. Length = 409 Score = 66.4 bits (162), Expect = 1e-11 Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 3/139 (2%) Query: 262 ISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKL 321 ++ ++L+LN +D+ + S KV PPLR + ++E G DI+ SDH P H + Sbjct: 228 VTPHHLLLN-DDMPL-GSYGKVNPPLRDRWTQERLLEEYISGRFDILSSDHAP-HTEEDK 284 Query: 322 LPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPGGTLQTGTAAD 381 F A G IG+ET + L L + + L L + RPA +F + G ++ G AD Sbjct: 285 QEFEYAKSGIIGVETRVPLFLALVKKKILPLDVLYKTAIERPASLFGIKKGKIEEGYDAD 344 Query: 382 IALIDLNYQWTVKADDMSS 400 D + + S Sbjct: 345 FMAFDFTNIKKINDKRLHS 363 Score = 34.8 bits (80), Expect = 0.040 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 8/82 (9%) Query: 17 DIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYS 76 D I VE+G I + DA N L G + +P D V + Sbjct: 12 KFDY-LEIEVEDGKIKSIKKDAGN--IGKKEL----KGAI-LPAATDIHVHFRTPGETEK 63 Query: 77 KNITTLSKEAVAGGITSIILMP 98 ++ +T + A+ GG T I+ MP Sbjct: 64 EDFSTGTLSAIFGGTTFIMDMP 85 >gnl|CDD|184033 PRK13404, PRK13404, dihydropyrimidinase; Provisional. Length = 477 Score = 63.9 bits (156), Expect = 7e-11 Identities = 111/493 (22%), Positives = 174/493 (35%), Gaps = 127/493 (25%) Query: 5 VLNNTRIIDPSR----DIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 V+ ++ + DI G I G L GA ++A TG + +PG Sbjct: 7 VIRGGTVVTATDTFQADIGIRGGRIAALGEGLGPGAREIDA-----------TGRLVLPG 55 Query: 61 IIDARV---TLTGSPDEYSKNITTLSKEAVAGGITSIILMPL---GMS--SFLDEY---- 108 +D+ +G + + T + A GG T++I G S +++Y Sbjct: 56 GVDSHCHIDQPSGDGIMMADDFYTGTVSAAFGGTTTVIPFAAQHRGQSLREAVEDYHRRA 115 Query: 109 ---TFIKYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSF----IQSPMS 161 I YA LI PT + + E+ L QG SF + Sbjct: 116 AGKAVIDYAFH------LIVADPTEEVLTE-------ELPALIAQGYTSFKVFMTYDDLK 162 Query: 162 IHDTQVLLNSMKYAHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLA 221 + D Q +L+ + A A+V + N +IA L Sbjct: 163 LDDRQ-ILDVLAVARRHGAMVMVHAE----------NHDMIAW---------------LT 196 Query: 222 RDLLIAQHTGGHYHASV----------------------------ISIPQSIALIKHAKA 253 + LL A T YHA +S ++ I+ A+ Sbjct: 197 KRLLAAGLTAPKYHAISRPMLAEREATHRAIALAELVDVPILIVHVSGREAAEQIRRARG 256 Query: 254 HNTKA---TCGISINNLILNENDVE---MYNSLRKVLPPLRSETERMSMVEALEKGDIDI 307 K TC L L D++ M + PP R + + ++ L G ++ Sbjct: 257 RGLKIFAETCP---QYLFLTAEDLDRPGMEGAKYICSPPPRDKANQEAIWNGLADGTFEV 313 Query: 308 IVSDHTP-RHMDT--KLLPFAEASFGSI-----GLETML----SAALRLFHGQQISLKKL 355 SDH P R DT KL A SF +I G+ET L S + +ISL + Sbjct: 314 FSSDHAPFRFDDTDGKLAAGANPSFKAIANGIPGIETRLPLLFSEGVV---KGRISLNRF 370 Query: 356 IRALSTRPAQIFNLP--GGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413 + ST PA+++ L G + G ADIA+ D + + T+ D+ T ++ T Sbjct: 371 VALTSTNPAKLYGLYPRKGAIAIGADADIAIWDPDREVTITNADLHHAADYTPYEGMRVT 430 Query: 414 GKVVRTYISGKQV 426 G V G+ V Sbjct: 431 GWPVTVLSRGRVV 443 >gnl|CDD|178530 PLN02942, PLN02942, dihydropyrimidinase. Length = 486 Score = 55.6 bits (134), Expect = 2e-08 Identities = 105/437 (24%), Positives = 183/437 (41%), Gaps = 39/437 (8%) Query: 17 DIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLT----GSP 72 E+ + VE+GII+A N K P + D TG +PG ID L G+ Sbjct: 18 HHQELADVYVEDGIIVAVAP---NLKVPDDVRVIDATGKFVMPGGIDPHTHLAMPFMGT- 73 Query: 73 DEYSKNITTLSKEAVAGGITSII--LMPLGMSSFLDEYTFIKYALEEIRVKSLINVYPTA 130 E + + A+AGG T I ++P+ + + K A KS ++ Y Sbjct: 74 -ETIDDFFSGQAAALAGGTTMHIDFVIPVNGNLLAGYEAYEKKA-----EKSCMD-YGFH 126 Query: 131 CLTSNMEGKEISEMRLL-QEQGIVSF-----IQSPMSIHDTQVLLNSMKYAHMLNAIVAL 184 + + +M L +E+GI SF + + + D ++LL K L A+ + Sbjct: 127 MAITKWDDTVSRDMETLVKEKGINSFKFFMAYKGSLMVTD-ELLLEGFKRCKSLGALAMV 185 Query: 185 DTHDH---FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGH-YHASVIS 240 + F G + +I GI + P + E AR + +A+ Y V+S Sbjct: 186 HAENGDAVFEGQKRMIELGITGPEGHALSRPPLLEGEATARAIRLAKFVNTPLYVVHVMS 245 Query: 241 IPQSIALIKHAKAHNTKATCGISINNLILNEN---DVEMYNSLRKVL-PPLRSETERMSM 296 I ++ I A+ + ++ L+L+++ D + + + V+ PP+R ++ Sbjct: 246 I-DAMEEIARARKSGQRVIGEPVVSGLVLDDSKLWDPDFTIASKYVMSPPIRPAGHGKAL 304 Query: 297 VEALEKGDIDIIVSDHTPRHMDTKLL---PFAEASFGSIGLETMLSAAL-RLFHGQQISL 352 AL G + ++ +DH P + K F + G G+E + + QIS Sbjct: 305 QAALSSGILQLVGTDHCPFNSTQKAFGKDDFRKIPNGVNGIEERMHLVWDTMVESGQISP 364 Query: 353 KKLIRALSTRPAQIFNL--PGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKE 410 +R ST A+IFN+ G + G+ ADI +++ N +T+ A S V++ Sbjct: 365 TDYVRVTSTECAKIFNIYPRKGAILAGSDADIIILNPNSTFTISAKTHHSRIDTNVYEGR 424 Query: 411 FFTGKVVRTYISGKQVY 427 GKV T G+ V+ Sbjct: 425 RGKGKVEVTISQGRVVW 441 >gnl|CDD|183497 PRK12394, PRK12394, putative metallo-dependent hydrolase; Provisional. Length = 379 Score = 52.8 bits (127), Expect = 2e-07 Identities = 85/418 (20%), Positives = 146/418 (34%), Gaps = 116/418 (27%) Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63 ++ N IIDP+R+I+E+ + + N II DA + I G + PG+ID Sbjct: 5 ILITNGHIIDPARNINEINNLRIINDII----VDADKYPVASETRIIHADGCIVTPGLID 60 Query: 64 --ARVTLTGS-----PDEYS--KNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYA 114 A V G+ PD Y +TT V G + + Sbjct: 61 YHAHVFYDGTEGGVRPDMYMPPNGVTT----VVDAGSAGTANFDAFYRTVI--------C 108 Query: 115 LEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKY 174 ++R+K+ + V P + +E + + E I + + Sbjct: 109 ASKVRIKAFLTVSPPG--QTWSGYQENYDPDNIDENKIHALFR----------------- 149 Query: 175 AHMLNAIVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDL--LIAQHTGG 232 + G + + IA Y G+ ++ET+ +A DL +A H+ Sbjct: 150 ----------QYRNVLQGLKLRVQTEDIAEY----GLKPLTETLRIANDLRCPVAVHSTH 195 Query: 233 HY--HASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSE 290 ++S+ + +I HA H +T L E VL +R Sbjct: 196 PVLPMKELVSLLRRGDIIAHA-FHGKGSTI--------LTEEG--------AVLAEVRQA 238 Query: 291 TERMSMVE---------------ALEKGDI-DIIVSDHTPRHMDT---KLLPFAEASFGS 331 ER + + A+ G + DII SD + LP+ + + + Sbjct: 239 RERGVIFDAANGRSHFDMNVARRAIANGFLPDIISSDLSTITKLAWPVYSLPWVLSKYLA 298 Query: 332 IGLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG--GTLQTGTAADIALIDL 387 +G+ +L+ +I A + PA + + GTL G ADIA+ L Sbjct: 299 LGM----------------ALEDVINACTHTPAVLMGMAAEIGTLAPGAFADIAIFKL 340 >gnl|CDD|181633 PRK09061, PRK09061, D-glutamate deacylase; Validated. Length = 509 Score = 48.5 bits (116), Expect = 3e-06 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 5/59 (8%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63 V+ N R++DP +D V + ++ G I A G A+ I D TGLV PG ID Sbjct: 22 VIRNGRVVDPETGLDAVRDVGIKGGKIAAVGTAAIEGD----RTI-DATGLVVAPGFID 75 >gnl|CDD|181711 PRK09228, PRK09228, guanine deaminase; Provisional. Length = 433 Score = 46.3 bits (111), Expect = 1e-05 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Query: 19 DEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARV 66 E G ++VE+G I+AAG L A+ P A + D G + +PG ID + Sbjct: 29 IEDGLLLVEDGRIVAAGPYAELRAQLPADAEVTDYRGKLILPGFIDTHI 77 >gnl|CDD|181795 PRK09356, PRK09356, imidazolonepropionase; Validated. Length = 406 Score = 44.0 bits (105), Expect = 8e-05 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 7/70 (10%) Query: 1 MTSFVLNNTRIIDPSRD------IDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTG 54 M + N ++ I E GAI +E+G I+ G +A + +A + D G Sbjct: 2 MADLLWTNAQLATMDGGGMGELGIIEDGAIAIEDGKIVWVGPEA-DLPAAYAAEVIDAGG 60 Query: 55 LVAVPGIIDA 64 + PG+ID Sbjct: 61 KLVTPGLIDC 70 >gnl|CDD|185343 PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional. Length = 383 Score = 42.9 bits (102), Expect = 2e-04 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 M +L+N R++ P +D G++++E+G I A A D G +PG Sbjct: 1 MMEMILSNARLVLPDEVVD--GSLLIEDGRIAAIDPGASAL-----PGAIDAEGDYLLPG 53 Query: 61 IID 63 ++D Sbjct: 54 LVD 56 Score = 38.6 bits (91), Expect = 0.003 Identities = 22/95 (23%), Positives = 38/95 (40%), Gaps = 21/95 (22%) Query: 294 MSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLK 353 +S ++ G +DI+ SD+ P AS +L AA RL + L Sbjct: 288 VSALDLAAAGLLDILSSDYYP------------AS--------LLDAAFRLADDGGLDLP 327 Query: 354 KLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDL 387 + + ++ PA+ L G + G AD+ + Sbjct: 328 QAVALVTANPARAAGLDDRGEIAPGKRADLVRVRR 362 >gnl|CDD|132012 TIGR02967, guan_deamin, guanine deaminase. This model describes guanine deaminase, which hydrolyzes guanine to xanthine and ammonia. Xanthine can then be converted to urate by xanthine dehydrogenase, and urate subsequently degraded. In some bacteria, the guanine deaminase gene is found near the xdhABC genes for xanthine dehydrogenase. Non-homologous forms of guanine deaminase also exist, as well as distantly related forms outside the scope of this model. Length = 401 Score = 39.2 bits (92), Expect = 0.002 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%) Query: 18 IDEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARV 66 E G ++VENG I+A G L P I D G + +PG ID + Sbjct: 3 YFEDGLLVVENGRIVAVGDYAELKETLPAGVEIDDYRGHLIMPGFIDTHI 52 >gnl|CDD|181717 PRK09237, PRK09237, dihydroorotase; Provisional. Length = 380 Score = 38.3 bits (90), Expect = 0.004 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%) Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63 +L R+IDP+ ID V I +E+G I AA A ++ + + D +GL PG ID Sbjct: 1 LLLRGGRVIDPANGIDGVIDIAIEDGKI-AAVAGDIDG--SQAKKVIDLSGLYVSPGWID 57 Score = 36.0 bits (84), Expect = 0.019 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%) Query: 350 ISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDL 387 + L+++I A++ A LP G LQ G+ AD+ L L Sbjct: 296 MPLEEVIAAVTKNAADALRLPELGRLQVGSDADLTLFTL 334 >gnl|CDD|180880 PRK07203, PRK07203, putative chlorohydrolase/aminohydrolase; Validated. Length = 442 Score = 37.6 bits (88), Expect = 0.006 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 4/64 (6%) Query: 4 FVLNNTRII--DPSRDIDEVGAIIVENGIILAAG-ADALNAKFPTSALIHDCTGLVAVPG 60 ++ N I DP++ + E GAI +E +I+ G D L AK+P + I D G + +PG Sbjct: 2 LLIGNGTAITRDPAKPVIEDGAIAIEGNVIVEIGTTDELKAKYPDAEFI-DAKGKLIMPG 60 Query: 61 IIDA 64 +I++ Sbjct: 61 LINS 64 >gnl|CDD|132357 TIGR03314, Se_ssnA, putative selenium metabolism protein SsnA. Members of this protein family are found exclusively in genomes that contain putative set of labile selenium-dependent enzyme accessory proteins as well as homologs of a labile selenium-dependent purine hydroxylase. A mutant in this gene in Escherichia coli had improved stationary phase viability. The function is unknown. Length = 441 Score = 37.5 bits (87), Expect = 0.007 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Query: 4 FVLNNTRII--DPSRDIDEVGAIIVENGIILAAGADA-LNAKFPTSALIHDCTGLVAVPG 60 ++ N + DP+R I E G I ++ +I A G L K+P + I D G + +PG Sbjct: 1 LLIGNGTAVQLDPTRPIQEGGDIAIDGDVIKAVGPTEELKQKYPEATFI-DAKGKLIMPG 59 Query: 61 IIDA 64 I+ Sbjct: 60 FINT 63 >gnl|CDD|183849 PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed. Length = 774 Score = 34.2 bits (79), Expect = 0.062 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 5/29 (17%) Query: 277 YNSLRKVLPPLRSETERMSMVEALEKGDI 305 + +KVLPPL S+TER EA+E GD+ Sbjct: 31 FKFFKKVLPPL-SDTER----EAMEAGDV 54 >gnl|CDD|182623 PRK10657, PRK10657, isoaspartyl dipeptidase; Provisional. Length = 388 Score = 34.0 bits (79), Expect = 0.077 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 7/77 (9%) Query: 24 IIVENGIILAAGAD-ALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSPDEYSKNITT- 81 I++ G I+A + + P +I D +G + VPG ID V + G E + T Sbjct: 21 ILIAGGKIIAIADNINIPDIVPDIEVI-DASGKILVPGFIDQHVHIIGGGGEGGFSTRTP 79 Query: 82 ---LSKEAVAGGITSII 95 LS + GIT+++ Sbjct: 80 EVQLS-DLTEAGITTVV 95 Score = 30.9 bits (71), Expect = 0.67 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 333 GLETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALID 386 +E++L L + + L+ ++ L++ A+ L G G + G AD+ ++D Sbjct: 306 SVESLLEEVRELVKDEGLPLEDALKPLTSNVARFLKLNGKGEILPGKDADLLVLD 360 >gnl|CDD|183965 PRK13308, ureC, urease subunit alpha; Reviewed. Length = 569 Score = 33.1 bits (76), Expect = 0.13 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 19/101 (18%) Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGA----DALNAKFP-----TSALIHDCTG 54 FVL N +IDP I G I + +G I+ G D ++ P + G Sbjct: 70 FVLCNVTVIDPVLGI-VKGDIGIRDGRIVGIGKAGNPDIMDGVDPRLVVGPGTDVRPAEG 128 Query: 55 LVAVPGIIDARVTLTGSPDEYSKNITTLSKEAVAGGITSII 95 L+A PG ID V S L A+A GIT+++ Sbjct: 129 LIATPGAIDVHVHFD-SAQ--------LVDHALASGITTML 160 >gnl|CDD|132622 TIGR03583, EF_0837, probable amidohydrolase EF_0837/AHA_3915. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. These proteins resemble aminohydrolases (see pfam01979), including dihydroorotases. The function is unknown. Length = 365 Score = 33.1 bits (76), Expect = 0.13 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%) Query: 334 LETMLSAALRLFHGQQISLKKLIRALSTRPAQIFNLPG-GTLQTGTAADIALIDL 387 L T++S L L + SL+++I ++ A+I L G LQ G AD+ + + Sbjct: 281 LATVMSKFLALGY----SLEEVIEKVTKNAAEILKLTQKGRLQEGYDADLTIFTV 331 >gnl|CDD|181287 PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed. Length = 451 Score = 32.9 bits (76), Expect = 0.17 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 1 MTSFVLNNTRII--DPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAV 58 T ++ N I+ D +R G ++VE G I+ G A + + D G V Sbjct: 1 TTLWIKNPLAIVTMDAARREIADGGLVVEGGRIVEVGPGG--ALPQPADEVFDARGHVVT 58 Query: 59 PGII 62 PG++ Sbjct: 59 PGLV 62 >gnl|CDD|183843 PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional. Length = 596 Score = 33.0 bits (76), Expect = 0.17 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%) Query: 10 RIIDPSRDIDEVGAIIVEN-GIILAAG-ADALNAKFPTSALIHDCTGLVAVPGIIDARVT 67 RI DP+ DIDE +++ G + G A+ +N + P +AL+ G+ ++P I D R + Sbjct: 437 RIDDPALDIDEHCILVIRGAGPVGYPGSAEVVNMQPP-AALLK--RGIRSLPCIGDGRQS 493 Query: 68 LTGSPDEYSKNITTLSKEAVAGG 90 T S +I S EA GG Sbjct: 494 GTS----GSPSILNASPEAAVGG 512 >gnl|CDD|131030 TIGR01975, isoAsp_dipep, isoaspartyl dipeptidase IadA. The L-isoaspartyl derivative of Asp arises non-enzymatically over time as a form of protein damage. In this isomerization, the connectivity of the polypeptide changes to pass through the beta-carboxyl of the side chain. Much but not all of this damage can be repaired by protein-L-isoaspartate (D-aspartate) O-methyltransferase. This model describes the isoaspartyl dipeptidase IadA, apparently one of two such enzymes in E. coli, an enzyme that degrades isoaspartyl dipeptides and may unblock degradation of proteins that cannot be repaired. This model also describes closely related proteins from other species (e.g. Clostridium perfringens, Thermoanaerobacter tengcongensis) that we assume to be equivalent in function. This family shows homology to dihydroorotases. Length = 389 Score = 32.4 bits (74), Expect = 0.20 Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 6/95 (6%) Query: 5 VLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDA 64 +L + P I + +I + II A F + ++ G++AVPG ID Sbjct: 3 LLKGAEVYAPE-YIGKKDILIANDKIIAIADEIPSTKDFVPNCVVVGLEGMIAVPGFIDQ 61 Query: 65 RVTLTGSPDEYSKNITT----LSKEAVAGGITSII 95 V + G E T LS + GG+T+++ Sbjct: 62 HVHIIGGGGEGGPTTRTPELTLS-DITKGGVTTVV 95 >gnl|CDD|130246 TIGR01178, ade, adenine deaminase. The family described by this model includes an experimentally characterized adenine deaminase of Bacillus subtilis. It also include a member from Methanobacterium thermoautotrophicum, in which adenine deaminase activity has been detected. Length = 552 Score = 32.4 bits (74), Expect = 0.21 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 17/98 (17%) Query: 4 FVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIID 63 V+ N +IID G I + NG I AG N + D G AVPG ID Sbjct: 2 IVIKNAKIIDVYNGEIIPGDIAIANGHI--AGVGKYNG-----VKVIDALGEYAVPGFID 54 Query: 64 ARVTLTGS---PDEYSKNITTLSKEAVAGGITSIILMP 98 A + + S P E++K + + G+T+++ P Sbjct: 55 AHIHIESSMLTPSEFAKLV-------LPHGVTTVVSDP 85 >gnl|CDD|177721 PLN00104, PLN00104, MYST -like histone acetyltransferase; Provisional. Length = 450 Score = 32.0 bits (73), Expect = 0.32 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 14/66 (21%) Query: 135 NMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKY---AHMLNAIVA-LDTHDHF 190 N+ KE+S+M ++ + IVS +QS LN ++Y H++ A L+ H Sbjct: 374 NISIKELSDMTAIKAEDIVSTLQS----------LNLIQYRKGQHVICADPKVLEEHLKA 423 Query: 191 LGSRGV 196 G G+ Sbjct: 424 AGRGGL 429 >gnl|CDD|162260 TIGR01224, hutI, imidazolonepropionase. This enzyme catalyzes the third step in histidine degradation. Length = 377 Score = 31.6 bits (72), Expect = 0.38 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 20 EVGAIIVENGIILAAGADALNAKFPTSAL-IHDCTGLVAVPGIID 63 E I++ G I+ G L A A I DC G + PG++D Sbjct: 2 EDAVILIHGGKIVWIGQ--LAALPGEEATEIIDCGGGLVTPGLVD 44 >gnl|CDD|183496 PRK12393, PRK12393, amidohydrolase; Provisional. Length = 457 Score = 31.6 bits (72), Expect = 0.41 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Query: 364 AQIFNLPG-GTLQTGTAADIALIDLN 388 A++ L GTL G AAD+A+ DL+ Sbjct: 369 ARVLGLDAIGTLAVGQAADLAIYDLD 394 >gnl|CDD|131371 TIGR02318, phosphono_phnM, phosphonate metabolism protein PhnM. This family consists of proteins from in the PhnM family. PhnM is a a protein associated with phosphonate utilization in a number of bacterial species. In Pseudomonas stutzeri WM88, a protein that is part of a system for the oxidation of phosphites (another form of reduced phosphorous compound) scores between trusted and noise cutoffs. Length = 376 Score = 31.2 bits (71), Expect = 0.60 Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 22/100 (22%) Query: 289 SETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQ 348 S + +S E +G +D++ SD+ P AS L AA +L Sbjct: 278 SHSGNLSARELAHEGLLDVLASDYVP------------ASL--------LLAAFQLADDV 317 Query: 349 Q-ISLKKLIRALSTRPAQIFNL-PGGTLQTGTAADIALID 386 + I L + ++ ++ PA+ L G++ G AD+ + Sbjct: 318 EGIPLPQAVKMVTKNPARAVGLSDRGSIAPGKRADLVRVH 357 >gnl|CDD|181419 PRK08418, PRK08418, chlorohydrolase; Provisional. Length = 408 Score = 31.1 bits (71), Expect = 0.61 Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Query: 353 KKLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFF 412 K L+ + + A+ L G ++ G AD+++ +L + + + Sbjct: 342 KILLLSATRYGAKALGLNNGEIKEGKDADLSVFEL--------PEECTKKEQLPLQFILH 393 Query: 413 TGKVVRTYISGKQV 426 +V + +I GK+V Sbjct: 394 AKEVKKLFIGGKEV 407 >gnl|CDD|183875 PRK13168, rumA, 23S rRNA m(5)U1939 methyltransferase; Reviewed. Length = 443 Score = 30.9 bits (71), Expect = 0.66 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 13/55 (23%) Query: 284 LPPLRSETERMSMVEALEKGDIDIIVSDHTP----RHMD-------TKLLPFAEA 327 LPPLR+ +S L G +++ D+ RH++ KL FAE Sbjct: 179 LPPLRALLSSLSAKRRL--GHVELAQGDNGTALVLRHLEPLSEADRAKLRAFAEQ 231 >gnl|CDD|150655 pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249). Members of this family of hypothetical bacterial proteins have no known function. Length = 69 Score = 30.6 bits (70), Expect = 0.89 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 5/51 (9%) Query: 280 LRKVLPPLRSETERMSMVEALEKGDIDIIVSDHTPRHMDTKLLPFAEASFG 330 +R++ P R +ALE G+ +V+DH P LL EA F Sbjct: 3 VREIPPRERHAA-IFGAFDALEPGESLELVNDHDPLP----LLYQLEARFP 48 >gnl|CDD|180337 PRK05985, PRK05985, cytosine deaminase; Provisional. Length = 391 Score = 29.9 bits (68), Expect = 1.5 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 12/76 (15%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 MT + N R + I++ +G I A G AL A P A + D G +A+PG Sbjct: 1 MTDLLFRNVRPAGGAA-----VDILIRDGRIAAIGP-ALAA--PPGAEVEDGGGALALPG 52 Query: 61 IIDARV----TLTGSP 72 ++D + T G P Sbjct: 53 LVDGHIHLDKTFWGDP 68 >gnl|CDD|161975 TIGR00643, recG, ATP-dependent DNA helicase RecG. Length = 630 Score = 29.6 bits (67), Expect = 1.5 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 10/46 (21%) Query: 277 YNSLRKVLPPLRSETE----------RMSMVEALEKGDIDIIVSDH 312 YNSLR +L PL E R ++E + G I ++V H Sbjct: 301 YNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTH 346 >gnl|CDD|182836 PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional. Length = 681 Score = 29.3 bits (67), Expect = 1.9 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 10/43 (23%) Query: 277 YNSLRKVLPPLR----------SETERMSMVEALEKGDIDIIV 309 Y +L+K+L PL ER ++EA+ G+ DI++ Sbjct: 327 YENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVI 369 >gnl|CDD|117068 pfam08491, SE, Squalene epoxidase. This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway. Putative transmembrane regions are found to the protein's C-terminus. Length = 276 Score = 29.2 bits (66), Expect = 2.0 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 10/89 (11%) Query: 235 HASVISIPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERM 294 H VI S L+ + T+ C L N E+ L+ + P + R Sbjct: 45 HGHVILGKPSPILLYQISSTETRILCDYPGPKLPSIANG-ELKEYLKTSVAPQIPKELRP 103 Query: 295 SMVEALEKGDIDIIVSDHTPRHMDTKLLP 323 S + AL++G I R M LP Sbjct: 104 SFLAALDEGKI---------RSMPNSFLP 123 >gnl|CDD|182201 PRK10027, PRK10027, cryptic adenine deaminase; Provisional. Length = 588 Score = 29.0 bits (65), Expect = 2.5 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 15/81 (18%) Query: 22 GAIIVENGIILAAGADALNAKFPTSAL-IHDCTGLVAVPGIIDARVTLTGS---PDEYSK 77 G I+++ I GA+ + AL D G AVPG IDA + + S P + Sbjct: 50 GPIVIKGRYIAGVGAEYAD----APALQRIDARGATAVPGFIDAHLHIESSMMTPVTFET 105 Query: 78 NITTLSKEAVAGGITSIILMP 98 TL + G+T++I P Sbjct: 106 --ATLPR-----GLTTVICDP 119 >gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional. Length = 449 Score = 28.0 bits (63), Expect = 4.2 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 12/69 (17%) Query: 1 MTSFVLNNTRII--DPSR-DIDEVGAIIVENGIILAAGA--DALNAKFPTSALIHDCTGL 55 M ++ ++ DP+ D+ G I++E I A +A +A+ + D G+ Sbjct: 1 MKRTLIRGGTVLTMDPAIGDLPR-GDILIEGDRIAAVAPSIEAPDAE------VVDARGM 53 Query: 56 VAVPGIIDA 64 + +PG++D Sbjct: 54 IVMPGLVDT 62 >gnl|CDD|181060 PRK07630, PRK07630, CobD/CbiB family protein; Provisional. Length = 312 Score = 27.7 bits (62), Expect = 5.7 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 9/46 (19%) Query: 27 ENGIILAAGADALNAKFPTSALIHDCTGLVAVPGIIDARVTLTGSP 72 +GI+LAAGA AL + +A P +DA P Sbjct: 236 NDGILLAAGAGALGVRLGGP---------LAEPSSVDALAVGDRPP 272 >gnl|CDD|181039 PRK07572, PRK07572, cytosine deaminase; Validated. Length = 426 Score = 27.7 bits (62), Expect = 5.9 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%) Query: 331 SIGLETMLSAALRLFHGQQIS----LKKLIRALSTRPAQIFNLPGGTLQTGTAADIALID 386 S+G ML A H Q++ ++ A++ PA+I L G L+ G AD+ L+ Sbjct: 317 SLGSGDMLEVAHMGLHVAQMTGQDAMRACFDAVTVNPARIMGLEGYGLEPGCNADLVLLQ 376 >gnl|CDD|152687 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins is found in bacteria. Proteins in this family are typically between 397 and 1543 amino acids in length. This family is the SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family. Length = 1443 Score = 27.5 bits (61), Expect = 7.4 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 7/39 (17%) Query: 135 NMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMK 173 NM+ EI+ R++Q+ + +P IHD VL+N K Sbjct: 599 NMD--EIAAARIIQQ-----ILANPDCIHDDHVLINGQK 630 >gnl|CDD|131387 TIGR02334, prpF, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. Length = 390 Score = 27.1 bits (60), Expect = 8.6 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 4/39 (10%) Query: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMS 399 R A F P GTL+ G A N QWTV MS Sbjct: 338 ERSAVRFGHPSGTLRVGAEASQV----NGQWTVTKAIMS 372 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.134 0.376 Gapped Lambda K H 0.267 0.0684 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,985,071 Number of extensions: 460471 Number of successful extensions: 1072 Number of sequences better than 10.0: 1 Number of HSP's gapped: 999 Number of HSP's successfully gapped: 80 Length of query: 431 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 335 Effective length of database: 3,920,105 Effective search space: 1313235175 Effective search space used: 1313235175 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.6 bits)