BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus
Liberibacter asiaticus str. psy62]
         (431 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 431

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/431 (100%), Positives = 431/431 (100%)

Query: 1   MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60
           MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG
Sbjct: 1   MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60

Query: 61  IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120
           IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV
Sbjct: 61  IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120

Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNA 180
           KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNA
Sbjct: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNA 180

Query: 181 IVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVIS 240
           IVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVIS
Sbjct: 181 IVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVIS 240

Query: 241 IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEAL 300
           IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEAL
Sbjct: 241 IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEAL 300

Query: 301 EKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALS 360
           EKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALS
Sbjct: 301 EKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALS 360

Query: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY 420
           TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY
Sbjct: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY 420

Query: 421 ISGKQVYTLES 431
           ISGKQVYTLES
Sbjct: 421 ISGKQVYTLES 431


>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1040

 Score = 26.9 bits (58), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 112  KYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVS 154
            KY+ +E+  KSL N+     L  N E   IS +RL ++  I S
Sbjct: 980  KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022


>537021.9.peg.410_1 
          Length = 952

 Score = 26.9 bits (58), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 190 FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIK 249
           FL  +    + II   +     P + E +  ++D  I      + +    S   S+ L K
Sbjct: 73  FLTQKFTPQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131

Query: 250 HAKAHN---TKATCGISINNLILNENDV 274
           +  AH     K  C +   +LI+N ND+
Sbjct: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL 159


>gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 707

 Score = 26.2 bits (56), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/70 (25%), Positives = 32/70 (45%)

Query: 354 KLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413
           +L   ++ +P+++  L   T   G      L +L    +V A D++ I   + FD + F 
Sbjct: 305 QLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFL 364

Query: 414 GKVVRTYISG 423
            K+   YIS 
Sbjct: 365 QKIDDEYISN 374


>gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 609

 Score = 24.3 bits (51), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 6   LNNTRIIDPSRDIDEVGAIIVENGIILAA----GADALNAKFPTSALIHDCTGL------ 55
           L   RI++  R    VG +IVE+ II+ A     A A N     S++ H  T        
Sbjct: 129 LQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMG 188

Query: 56  --VAVPGII 62
             V +PG+I
Sbjct: 189 FEVGMPGLI 197


>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 23.9 bits (50), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSI 162
           K L+N+Y   C+    E  ++     L  + IVS  + P+++
Sbjct: 209 KGLVNIYKALCIADGFESNKV-----LSSKDIVSKSEDPIAL 245


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 262,841
Number of Sequences: 1233
Number of extensions: 10483
Number of successful extensions: 41
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 10
length of query: 431
length of database: 328,796
effective HSP length: 77
effective length of query: 354
effective length of database: 233,855
effective search space: 82784670
effective search space used: 82784670
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)