BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] (431 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780301|ref|YP_003064714.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 431 Score = 882 bits (2280), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/431 (100%), Positives = 431/431 (100%) Query: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG Sbjct: 1 MTSFVLNNTRIIDPSRDIDEVGAIIVENGIILAAGADALNAKFPTSALIHDCTGLVAVPG 60 Query: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV Sbjct: 61 IIDARVTLTGSPDEYSKNITTLSKEAVAGGITSIILMPLGMSSFLDEYTFIKYALEEIRV 120 Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNA 180 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNA Sbjct: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSIHDTQVLLNSMKYAHMLNA 180 Query: 181 IVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVIS 240 IVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVIS Sbjct: 181 IVALDTHDHFLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVIS 240 Query: 241 IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEAL 300 IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEAL Sbjct: 241 IPQSIALIKHAKAHNTKATCGISINNLILNENDVEMYNSLRKVLPPLRSETERMSMVEAL 300 Query: 301 EKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALS 360 EKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALS Sbjct: 301 EKGDIDIIVSDHTPRHMDTKLLPFAEASFGSIGLETMLSAALRLFHGQQISLKKLIRALS 360 Query: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY 420 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY Sbjct: 361 TRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFTGKVVRTY 420 Query: 421 ISGKQVYTLES 431 ISGKQVYTLES Sbjct: 421 ISGKQVYTLES 431 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 26.9 bits (58), Expect = 0.64, Method: Compositional matrix adjust. Identities = 16/43 (37%), Positives = 23/43 (53%) Query: 112 KYALEEIRVKSLINVYPTACLTSNMEGKEISEMRLLQEQGIVS 154 KY+ +E+ KSL N+ L N E IS +RL ++ I S Sbjct: 980 KYSADELSEKSLKNLIEIVTLLQNGEQPFISHLRLSEKSNIQS 1022 >537021.9.peg.410_1 Length = 952 Score = 26.9 bits (58), Expect = 0.71, Method: Compositional matrix adjust. Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 4/88 (4%) Query: 190 FLGSRGVINEGIIANYLGLVGIPSISETVPLARDLLIAQHTGGHYHASVISIPQSIALIK 249 FL + + II + P + E + ++D I + + S S+ L K Sbjct: 73 FLTQKFTPQKNIITQEINKKS-PDLKEKLKKSQDEFIKIRDRFNTYKMFKSTLASLTLAK 131 Query: 250 HAKAHN---TKATCGISINNLILNENDV 274 + AH K C + +LI+N ND+ Sbjct: 132 YLNAHYEEAKKKNCVLDFEDLIINTNDL 159 >gi|254781204|ref|YP_003065617.1| hypothetical protein CLIBASIA_05555 [Candidatus Liberibacter asiaticus str. psy62] Length = 707 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/70 (25%), Positives = 32/70 (45%) Query: 354 KLIRALSTRPAQIFNLPGGTLQTGTAADIALIDLNYQWTVKADDMSSIHKNTVFDKEFFT 413 +L ++ +P+++ L T G L +L +V A D++ I + FD + F Sbjct: 305 QLNHGITVKPSELIPLEDYTQAYGVEQGTELYNLQQFKSVAAPDVARIKLMSTFDAKKFL 364 Query: 414 GKVVRTYISG 423 K+ YIS Sbjct: 365 QKIDDEYISN 374 >gi|254780924|ref|YP_003065337.1| potassium-efflux system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 609 Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 12/69 (17%) Query: 6 LNNTRIIDPSRDIDEVGAIIVENGIILAA----GADALNAKFPTSALIHDCTGL------ 55 L RI++ R VG +IVE+ II+ A A A N S++ H T Sbjct: 129 LQENRILETDRGKIAVGWLIVEDLIIVLALVLIPAAATNYSAEPSSMTHPWTSFITQQMG 188 Query: 56 --VAVPGII 62 V +PG+I Sbjct: 189 FEVGMPGLI 197 >gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 23.9 bits (50), Expect = 5.8, Method: Compositional matrix adjust. Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 5/42 (11%) Query: 121 KSLINVYPTACLTSNMEGKEISEMRLLQEQGIVSFIQSPMSI 162 K L+N+Y C+ E ++ L + IVS + P+++ Sbjct: 209 KGLVNIYKALCIADGFESNKV-----LSSKDIVSKSEDPIAL 245 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.376 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 262,841 Number of Sequences: 1233 Number of extensions: 10483 Number of successful extensions: 41 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 36 Number of HSP's gapped (non-prelim): 10 length of query: 431 length of database: 328,796 effective HSP length: 77 effective length of query: 354 effective length of database: 233,855 effective search space: 82784670 effective search space used: 82784670 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)