HHsearch alignment for GI: 254780302 and conserved domain: COG0344
>COG0344 Predicted membrane protein [Function unknown].
Probab=100.00 E-value=0 Score=373.44 Aligned_cols=191 Identities=42% Similarity=0.716 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHCC--
Q ss_conf 9999999999998713779999999955998114789887899999976920102454450332234553345-4138--
Q gi|254780302|r 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVS-ELFD-- 87 (205)
Q Consensus 11 m~~~il~~~~~Yl~Gsip~~~~i~k~~~~~Dir~~GsgN~GatN~~r~~G~~~gi~v~l~D~~Kg~l~v~l~~-~~~~-- 87 (205)
T Consensus 2 ~~~~~~~l~~~YLlGSIp~g~ii~k~~~~~D~R~~GSgN~GaTNvlR~~G~k~a~~vl~lD~lKG~lav~l~~~~~~~~~ 81 (200)
T COG0344 2 LMLAILLLLIAYLLGSIPFGLIISKIFGGIDVRKIGSGNPGATNVLRVLGKKAAAAVLLLDILKGTLAVLLARFGLLGVL 81 (200)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 07999999999996562589999999379980106899997101068618228999999999876999999985124552
Q ss_pred CCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 63038999999873022102078762468989999984111000356788888999960013699999999999999807
Q gi|254780302|r 88 HKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITY 167 (205)
Q Consensus 88 ~~~~~~~~~~avlGH~fpi~l~FkGGKGvAt~~G~ll~l~p~~~li~~~i~~~~~~itr~~sl~sl~~~~~~~~~~~~~~ 167 (205)
T Consensus 82 ~~~~~l~~iaaiLGH~fpif~~FkGGKgVAT~~Gvll~l~p~~~l~~~~~~l~i~~l~ky~Slasl~~a~~~~~~~~--~ 159 (200)
T COG0344 82 PLVLALVGIAAILGHIFPIFFGFKGGKGVATTLGVLLALAPWLALIGAATWLLIALLTKYSSLASLVAAILAAPFLA--N 159 (200)
T ss_pred HHHHHHHHHHHHHHCCCCHHEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_conf 79999999999993367310005788612300269999979999999999999999999985999999999998862--1
Q ss_pred CCHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 854999-----999999999999979999999769886447
Q gi|254780302|r 168 PEVNIP-----IIFTFMTITVYWKHIENIKRLILGSEKKIF 203 (205)
Q Consensus 168 ~~~~~~-----~~~~~~~~li~~~Hr~NIkRL~~G~E~ki~ 203 (205)
T Consensus 160 ~~~~~~~~~~~~~~~~~~~lvi~rHr~NI~Rl~~g~E~ki~ 200 (200)
T COG0344 160 FDLYLIAPQIGFPVALLAILVIYRHRDNIQRLLNGTESKIG 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 12789999985899999999999998889999846654579