Query gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 127 out of 1912
Neff 6.5
Searched_HMMs 39220
Date Sun May 29 15:23:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780302.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00220 putative glycerol-3-p 100.0 0 0 424.0 20.5 195 11-205 2-197 (198)
2 TIGR00023 TIGR00023 conserved 100.0 0 0 396.8 18.9 193 13-205 4-243 (243)
3 pfam02660 DUF205 Domain of unk 100.0 0 0 373.4 16.9 177 19-195 1-178 (178)
4 COG0344 Predicted membrane pro 100.0 0 0 373.4 16.4 191 11-203 2-200 (200)
5 TIGR01763 MalateDH_bact malate 51.7 4.4 0.00011 20.1 0.1 36 40-75 2-39 (308)
6 COG0738 FucP Fucose permease [ 51.1 13 0.00033 17.5 2.5 31 6-36 45-75 (422)
7 TIGR02865 spore_II_E stage II 49.7 20 0.00051 16.5 9.7 94 107-200 193-315 (794)
8 pfam03967 PRCH Photosynthetic 47.0 11 0.00027 18.0 1.5 24 170-193 14-37 (135)
9 PRK09430 djlA Dna-J like membr 39.9 29 0.00074 15.7 3.0 28 10-37 2-32 (269)
10 PRK13022 secF preprotein trans 31.7 40 0.001 14.9 6.5 79 116-195 118-213 (294)
11 TIGR00785 dass transporter, di 30.0 28 0.00072 15.7 1.5 46 159-204 208-260 (473)
12 COG4129 Predicted membrane pro 29.0 45 0.0011 14.7 5.6 58 69-126 10-72 (332)
13 TIGR00707 argD acetylornithine 28.0 14 0.00036 17.3 -0.4 16 92-107 34-50 (402)
14 KOG2927 consensus 26.8 49 0.0013 14.4 3.2 16 94-109 200-215 (372)
15 PRK10369 heme lyase subunit Nr 24.0 45 0.0012 14.6 1.6 15 95-109 345-359 (552)
No 1
>PRK00220 putative glycerol-3-phosphate acyltransferase PlsY; Provisional
Probab=100.00 E-value=0 Score=423.96 Aligned_cols=195 Identities=39% Similarity=0.668 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 99999999999987137799999999559981147898878999999769201024544503322345533454138-63
Q gi|254780302|r 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVSELFD-HK 89 (205)
Q Consensus 11 m~~~il~~~~~Yl~Gsip~~~~i~k~~~~~Dir~~GsgN~GatN~~r~~G~~~gi~v~l~D~~Kg~l~v~l~~~~~~-~~ 89 (205)
.|..++.++++|++||+|+||+++|.++++|+||+||||+||||++|++|+|+|++|+++|++||++|+++++++.. +.
T Consensus 2 ~m~~il~~i~~YliGSIp~g~ii~k~~~~~DiR~~GSgN~GaTNv~R~~G~k~g~~vl~~D~lKG~lav~l~~~~~~~~~ 81 (198)
T PRK00220 2 SMIALLLILIAYLLGSIPFALIVGKLFGLPDPREHGSGNPGATNVLRIGGKKAAIATLLGDALKGTLAVLLAKLLGLDPI 81 (198)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 49999999999999721899999999189997667999960999999977799999999999802999999999779869
Q ss_pred CHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 03899999987302210207876246898999998411100035678888899996001369999999999999980785
Q gi|254780302|r 90 IGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPE 169 (205)
Q Consensus 90 ~~~~~~~~avlGH~fpi~l~FkGGKGvAt~~G~ll~l~p~~~li~~~i~~~~~~itr~~sl~sl~~~~~~~~~~~~~~~~ 169 (205)
...++++++++||+||+|++|||||||||++|++++++|..++++..+|+++..+|||+|++|+++...+|+..++...+
T Consensus 82 ~~~l~~~~avlGH~fpi~l~FkGGKGVAt~~G~ll~l~p~~~l~~~~~~~~~~~~tr~vSl~Si~~~~~~p~~~~~~~~~ 161 (198)
T PRK00220 82 SLGLIALAAVLGHIFPVFFKFKGGKGVATAAGVLLGIGPLLALILAATWLLVALLTRYSSLAALVAALIAPIYVWWYSYD 161 (198)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999997456887578626879999999999997999999999999999983331199999999999999999255
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 499999999999999997999999976988644779
Q gi|254780302|r 170 VNIPIIFTFMTITVYWKHIENIKRLILGSEKKIFKK 205 (205)
Q Consensus 170 ~~~~~~~~~~~~li~~~Hr~NIkRL~~G~E~ki~~k 205 (205)
....+...+++.+++||||+||+||+||||||+++|
T Consensus 162 ~~~~~~~~~~~~lii~rHr~NI~RL~~g~E~ki~~k 197 (198)
T PRK00220 162 PQFTIPVALLSVLIIYRHRDNIQRLLAGTESKIGWK 197 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 789999999999999999999999987987877778
No 2
>TIGR00023 TIGR00023 conserved hypothetical protein TIGR00023; InterPro: IPR003811 This entry describes proteins of unknown function..
Probab=100.00 E-value=0 Score=396.82 Aligned_cols=193 Identities=36% Similarity=0.555 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHC---CC----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998713779999999955998114789887899999976---92----010245445033223455334541
Q gi|254780302|r 13 APIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTS---NK----KLAFATLSLDAIKATATIIIVSEL 85 (205)
Q Consensus 13 ~~il~~~~~Yl~Gsip~~~~i~k~~~~~Dir~~GsgN~GatN~~r~~---G~----~~gi~v~l~D~~Kg~l~v~l~~~~ 85 (205)
-.+..++++||+||||+|++++|..+++||||.|||||||||++|++ |+ |+|++|++.|++||.+|+++.+.+
T Consensus 4 l~~~~~l~~YL~GSI~~a~~~~ki~~g~DiR~~GS~n~GATNvlR~lqskG~snak~~a~~Vli~D~lKG~lAv~l~~~~ 83 (243)
T TIGR00023 4 LIVFLLLIAYLIGSIPSAYLVGKILKGIDIREHGSGNPGATNVLRVLQSKGVSNAKKAALLVLIFDILKGMLAVALSFLL 83 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999998747999999999836898541678885468899976414751146889999999886408999999998
Q ss_pred CCC-C--------------CHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 386-3--------------0389999998730221020787624689899999841110003567888889999600136
Q gi|254780302|r 86 FDH-K--------------IGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSI 150 (205)
Q Consensus 86 ~~~-~--------------~~~~~~~~avlGH~fpi~l~FkGGKGvAt~~G~ll~l~p~~~li~~~i~~~~~~itr~~sl 150 (205)
+.+ . ..+..+++|++||+||+|+||||||||||++|+++.++|++++++..+|+.+..+|||+||
T Consensus 84 ~~~~~~~~L~a~~~~~~Y~Lt~~~~~aa~LGH~fp~F~~FkGGK~VAT~~G~l~~~~~~~~~~~l~~wl~v~~~tkyvSL 163 (243)
T TIGR00023 84 GLFDLLQGLVAAVYQKVYYLTYLSCIAAVLGHIFPIFFKFKGGKGVATSGGSLLLISLWLFLIMLAVWLLVTLLTKYVSL 163 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 65558888899887557899999999999851000002246724899999999999999999999999999999999999
Q ss_pred HHHH---HHHHHHHHHHHCCCCHH----------------HHHHHHHHH------HHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9999---99999999998078549----------------999999999------9999997999999976988644779
Q gi|254780302|r 151 SSLF---STLIIAMIIWITYPEVN----------------IPIIFTFMT------ITVYWKHIENIKRLILGSEKKIFKK 205 (205)
Q Consensus 151 ~sl~---~~~~~~~~~~~~~~~~~----------------~~~~~~~~~------~li~~~Hr~NIkRL~~G~E~ki~~k 205 (205)
+|++ +.+..++++|..+.+.. -.+...+++ ..+++|||+||+||++|+|+|+.+|
T Consensus 164 ~S~~GvGta~~~~~~~~~~~~~~~~~F~~~P~~~I~~~~~~~~~~~l~~wYWPLt~~v~~rHr~NI~Rll~g~E~Kv~~~ 243 (243)
T TIGR00023 164 SSIVGVGTALVLAFYVLWLKLPYLYFFKSDPLKAILYQNGWYIPVTLLLWYWPLTILVIYRHRANIQRLLRGTEPKVTQK 243 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
T ss_conf 99999999999999997505786413375367787764024899999985779999999999998999860364011149
No 3
>pfam02660 DUF205 Domain of unknown function (DUF205). This family consists of hypothetical transmembrane proteins none of which have any known function, the aligned region is around 200 amino acids long.
Probab=100.00 E-value=0 Score=373.36 Aligned_cols=177 Identities=42% Similarity=0.736 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHH
Q ss_conf 99998713779999999955998114789887899999976920102454450332234553345413863-03899999
Q gi|254780302|r 19 ILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVSELFDHK-IGILAGFA 97 (205)
Q Consensus 19 ~~~Yl~Gsip~~~~i~k~~~~~Dir~~GsgN~GatN~~r~~G~~~gi~v~l~D~~Kg~l~v~l~~~~~~~~-~~~~~~~~ 97 (205)
+++|++||+|+|++++|.++++|+||+|||||||||++|+.|||+|++|+++|++||++|+++++.+++++ ...+++++
T Consensus 1 i~~Yl~GSip~a~ii~k~~~~~DiR~~GSgN~GatNv~R~~G~k~g~~v~~~D~lKG~l~v~l~~~~~~~~~~~~~~~~~ 80 (178)
T pfam02660 1 LLAYLLGSIPFGYLIGKLFGGIDIRKVGSGNPGATNVLRVLGKKAGILVLLLDILKGFLAVLLARLLGLDPLLLALAGLA 80 (178)
T ss_pred CEEHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 91122033569999999937999422599994099999885708999999999981299999999987877999999999
Q ss_pred HHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 98730221020787624689899999841110003567888889999600136999999999999998078549999999
Q gi|254780302|r 98 TFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFT 177 (205)
Q Consensus 98 avlGH~fpi~l~FkGGKGvAt~~G~ll~l~p~~~li~~~i~~~~~~itr~~sl~sl~~~~~~~~~~~~~~~~~~~~~~~~ 177 (205)
+++||+||+|+||||||||||++|++++++|..++++..+|+++..+||++|++|+++...+|+..++.+++.+..+...
T Consensus 81 avlGH~fpi~~~FkGGKGvAt~~G~~l~l~p~~~li~~~~~~~~~~~tr~~sl~si~~~~~~~~~~~~~~~~~~~~~~~~ 160 (178)
T pfam02660 81 AVLGHNFPVFLKFKGGKGVATTLGVLLALSPLVALIALAVWLLVLLITRYVSLASLVAALLLPILLWLFGGPLEYLLFAL 160 (178)
T ss_pred HHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 99745687548898806799999999999499999999999999999606029999999999999999807789999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999999999799999997
Q gi|254780302|r 178 FMTITVYWKHIENIKRLI 195 (205)
Q Consensus 178 ~~~~li~~~Hr~NIkRL~ 195 (205)
+++.+++||||+||+||+
T Consensus 161 ~~~~lii~~H~~NI~RLl 178 (178)
T pfam02660 161 LLALLVIYRHRENIKRLL 178 (178)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999769
No 4
>COG0344 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=0 Score=373.44 Aligned_cols=191 Identities=42% Similarity=0.716 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHCC--
Q ss_conf 9999999999998713779999999955998114789887899999976920102454450332234553345-4138--
Q gi|254780302|r 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVS-ELFD-- 87 (205)
Q Consensus 11 m~~~il~~~~~Yl~Gsip~~~~i~k~~~~~Dir~~GsgN~GatN~~r~~G~~~gi~v~l~D~~Kg~l~v~l~~-~~~~-- 87 (205)
++..++.++.+|++||+|+++|++|.++++|+||+|||||||||++|+.|+|+|..|+++|++||.+|+++++ ....
T Consensus 2 ~~~~~~~l~~~YLlGSIp~g~ii~k~~~~~D~R~~GSgN~GaTNvlR~~G~k~a~~vl~lD~lKG~lav~l~~~~~~~~~ 81 (200)
T COG0344 2 LMLAILLLLIAYLLGSIPFGLIISKIFGGIDVRKIGSGNPGATNVLRVLGKKAAAAVLLLDILKGTLAVLLARFGLLGVL 81 (200)
T ss_pred CHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 07999999999996562589999999379980106899997101068618228999999999876999999985124552
Q ss_pred CCCHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 63038999999873022102078762468989999984111000356788888999960013699999999999999807
Q gi|254780302|r 88 HKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITY 167 (205)
Q Consensus 88 ~~~~~~~~~~avlGH~fpi~l~FkGGKGvAt~~G~ll~l~p~~~li~~~i~~~~~~itr~~sl~sl~~~~~~~~~~~~~~ 167 (205)
+....++++++++||+||+|++|||||||||+.|++++++|+.++.+..+|+....++||+|++|+.+......+.. .
T Consensus 82 ~~~~~l~~iaaiLGH~fpif~~FkGGKgVAT~~Gvll~l~p~~~l~~~~~~l~i~~l~ky~Slasl~~a~~~~~~~~--~ 159 (200)
T COG0344 82 PLVLALVGIAAILGHIFPIFFGFKGGKGVATTLGVLLALAPWLALIGAATWLLIALLTKYSSLASLVAAILAAPFLA--N 159 (200)
T ss_pred HHHHHHHHHHHHHHCCCCHHEECCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_conf 79999999999993367310005788612300269999979999999999999999999985999999999998862--1
Q ss_pred CCHHHH-----HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 854999-----999999999999979999999769886447
Q gi|254780302|r 168 PEVNIP-----IIFTFMTITVYWKHIENIKRLILGSEKKIF 203 (205)
Q Consensus 168 ~~~~~~-----~~~~~~~~li~~~Hr~NIkRL~~G~E~ki~ 203 (205)
.+.... .....++.+++||||+||+|+.+|+|+|++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~lvi~rHr~NI~Rl~~g~E~ki~ 200 (200)
T COG0344 160 FDLYLIAPQIGFPVALLAILVIYRHRDNIQRLLNGTESKIG 200 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 12789999985899999999999998889999846654579
No 5
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=51.72 E-value=4.4 Score=20.06 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=29.8
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH--HHH
Q ss_conf 981147898878999999769201024544503--322
Q gi|254780302|r 40 QDIRSIGSGNIGATNVLRTSNKKLAFATLSLDA--IKA 75 (205)
Q Consensus 40 ~Dir~~GsgN~GatN~~r~~G~~~gi~v~l~D~--~Kg 75 (205)
+-|.=.|-||.|||-++|..-|..|-=+.++|+ .-|
T Consensus 2 kKisvIGAGfvGaTTAf~lA~KeLard~VLlDiPqvEg 39 (308)
T TIGR01763 2 KKISVIGAGFVGATTAFLLAEKELARDVVLLDIPQVEG 39 (308)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEECCCCC
T ss_conf 55899706861258999998674067168985055586
No 6
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=51.09 E-value=13 Score=17.50 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1299899999999999987137799999999
Q gi|254780302|r 6 FAYHELIAPIISLILSYAIGSIPFGLLLTRM 36 (205)
Q Consensus 6 ~~~~~m~~~il~~~~~Yl~Gsip~~~~i~k~ 36 (205)
.++.|-...-.....+|+++|+|.++++.|.
T Consensus 45 ls~~~a~liqfaff~gYf~~~lpa~~~~kk~ 75 (422)
T COG0738 45 LTYFEASLIQFAFFGGYFIMSLPAGLLIKKL 75 (422)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 6599999999999998999861499999884
No 7
>TIGR02865 spore_II_E stage II sporulation protein E; InterPro: IPR014221 This entry contains the stage II sporulation protein E (SpoIIE), which is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation and it has phosphatase activity, located in the C-terminal region, which is required to activate sigma-F. All members of this entry are found in endospore-forming Gram-positive bacteria. A homologous protein, not a member of this entry, is found in the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis..
Probab=49.71 E-value=20 Score=16.51 Aligned_cols=94 Identities=17% Similarity=0.316 Sum_probs=50.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHC--------H-HHHHHH------------HHHHHHHHHHHCCHHHHHHHHHHHHHH-HHH
Q ss_conf 207876246898999998411--------1-000356------------788888999960013699999999999-999
Q gi|254780302|r 107 WLKFKGGKGISTYIGVLIALE--------L-KMAILF------------SAIWMSSALVTGYSSISSLFSTLIIAM-IIW 164 (205)
Q Consensus 107 ~l~FkGGKGvAt~~G~ll~l~--------p-~~~li~------------~~i~~~~~~itr~~sl~sl~~~~~~~~-~~~ 164 (205)
...|=||=|++++.|+.+++- | ..++.+ ...+++.-..-...-+++.+++++... +.+
T Consensus 193 ~~sy~gGs~~G~A~Gvv~G~i~~l~~~~~~~~~g~~gPPtLsDsqamaYvf~GLLgG~Fk~~~K~gt~~gylvg~~i~~~ 272 (794)
T TIGR02865 193 LISYIGGSGAGAAIGVVIGVILGLANNANLIQIGVFGPPTLSDSQAMAYVFAGLLGGIFKELGKIGTAIGYLVGFLILAF 272 (794)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99854232147899999999998641122013311348652036799999999999898752179999999999999999
Q ss_pred HCCCCHHHHH---HHHHHHHHHHH----HHHHHHHHHHCCCCC
Q ss_conf 8078549999---99999999999----979999999769886
Q gi|254780302|r 165 ITYPEVNIPI---IFTFMTITVYW----KHIENIKRLILGSEK 200 (205)
Q Consensus 165 ~~~~~~~~~~---~~~~~~~li~~----~Hr~NIkRL~~G~E~ 200 (205)
..+.+..... ....++..+++ |....++|.++++++
T Consensus 273 Y~~~~~~~~~~lA~e~l~A~~lF~l~P~~~~~~~~~~l~~~~~ 315 (794)
T TIGR02865 273 YTQGSVAFSLALAYEVLIAALLFLLIPNKIYKKLERELDGEKK 315 (794)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8065133444468999999999998689999998975786325
No 8
>pfam03967 PRCH Photosynthetic reaction centre, H-chain N-terminal region. The family corresponds the N-terminal cytoplasmic domain.
Probab=47.01 E-value=11 Score=17.98 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 499999999999999997999999
Q gi|254780302|r 170 VNIPIIFTFMTITVYWKHIENIKR 193 (205)
Q Consensus 170 ~~~~~~~~~~~~li~~~Hr~NIkR 193 (205)
.....++++.+.+|+|-||||.+.
T Consensus 14 l~ly~FwiFFagLv~YL~rE~~RE 37 (135)
T pfam03967 14 LALYAFWIFFAGLVYYLRREDKRE 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 999999999999999861046546
No 9
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=39.94 E-value=29 Score=15.66 Aligned_cols=28 Identities=21% Similarity=0.458 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q ss_conf 899999999999987137799---9999995
Q gi|254780302|r 10 ELIAPIISLILSYAIGSIPFG---LLLTRMF 37 (205)
Q Consensus 10 ~m~~~il~~~~~Yl~Gsip~~---~~i~k~~ 37 (205)
+.+..++...+||.+|+.+.+ ++++..+
T Consensus 2 s~wGKiiGg~~Gf~~gGp~GAllG~~~Gh~~ 32 (269)
T PRK09430 2 QYWGKILGFFFGFLFGGFFGALLGLLIGHMF 32 (269)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7899999999999988689999999999998
No 10
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=31.72 E-value=40 Score=14.92 Aligned_cols=79 Identities=19% Similarity=0.285 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHH-----HHHHHHHHCCCCHHHHHHHHHHHHH-----
Q ss_conf 89899999841110003567888889999600---1369999999-----9999999807854999999999999-----
Q gi|254780302|r 116 ISTYIGVLIALELKMAILFSAIWMSSALVTGY---SSISSLFSTL-----IIAMIIWITYPEVNIPIIFTFMTIT----- 182 (205)
Q Consensus 116 vAt~~G~ll~l~p~~~li~~~i~~~~~~itr~---~sl~sl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l----- 182 (205)
|.++.|-=+.-+-..++....+...++...|+ .+++++++.+ .+.++.++ +-+........+++.+
T Consensus 118 VGP~vg~el~~~ai~Av~~Al~~I~iYI~iRF~~~fav~AiiAL~HDvli~lg~fsl~-~~ei~~~~IaAlLTiiGYSiN 196 (294)
T PRK13022 118 VGPQVGKELAQKGLLALLVALIGILIYIAFRFEWRFALGAIIALLHDVIITLGIFSLF-GIEFDLTVIAALLTIIGYSLN 196 (294)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHHCCCC
T ss_conf 8922899999999999999999999999999714217999999999999999999997-775318999999999632446
Q ss_pred ----HHHHHHHHHHHHH
Q ss_conf ----9999799999997
Q gi|254780302|r 183 ----VYWKHIENIKRLI 195 (205)
Q Consensus 183 ----i~~~Hr~NIkRL~ 195 (205)
++-|-|||.++..
T Consensus 197 DTIVvfDRIREn~~~~~ 213 (294)
T PRK13022 197 DTVVVFDRIRENFGRKI 213 (294)
T ss_pred CEEEEEHHHHHHHHCCC
T ss_conf 74999628878873155
No 11
>TIGR00785 dass transporter, divalent anion:Na+ symporter (DASS) family; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families currently consists of the following proteins: Mammalian sodium/sulphate cotransporter . Mammalian renal sodium/dicarboxylate cotransporter , which transports succinate and citrate. Mammalian intestinal sodium/dicarboxylate cotransporter. Chlamydomonas reinhardtii putative sulphur deprivation response regulator SAC1 . Caenorhabditis elegans hypothetical proteins B0285.6, F31F6.6, K08E5.2 and R107.1. Escherichia coli hypothetical protein yfbS. Haemophilus influenzae hypothetical protein HI0608. Synechocystis sp. (strain PCC 6803) hypothetical protein sll0640. Methanococcus jannaschii hypothetical protein MJ0672. These transporters are proteins of from 430 to 620 amino acids which are highly hydrophobic and which probably contain about 12 transmembrane regions.; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=30.03 E-value=28 Score=15.72 Aligned_cols=46 Identities=11% Similarity=0.130 Sum_probs=24.9
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHCCCCCCCCC
Q ss_conf 999999807854999999999999999-------9799999997698864477
Q gi|254780302|r 159 IAMIIWITYPEVNIPIIFTFMTITVYW-------KHIENIKRLILGSEKKIFK 204 (205)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~li~~-------~Hr~NIkRL~~G~E~ki~~ 204 (205)
++...|+.....+..+..++++-+++| ||++|.+|..+.|+++-|.
T Consensus 208 isw~~W~~~~~lP~~~~llll~~~llY~~fpP~~~~~~~~~~~ak~el~~mG~ 260 (473)
T TIGR00785 208 ISWGDWFLAGFLPLGIILLLLVPLLLYVLFPPELKSKDEVDLWAKEELEEMGP 260 (473)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 47667899945259999999999998652675104664388999886521150
No 12
>COG4129 Predicted membrane protein [Function unknown]
Probab=29.02 E-value=45 Score=14.66 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHH---CCCCCHHHHHHHHHH--HHCCCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 45033223455334541---386303899999987--30221020787624689899999841
Q gi|254780302|r 69 SLDAIKATATIIIVSEL---FDHKIGILAGFATFL--GHIFPVWLKFKGGKGISTYIGVLIAL 126 (205)
Q Consensus 69 l~D~~Kg~l~v~l~~~~---~~~~~~~~~~~~avl--GH~fpi~l~FkGGKGvAt~~G~ll~l 126 (205)
..+.+|..+++.++.++ ++......+++.||+ .+..+==++.-..+=++++.|+.++.
T Consensus 10 g~RtlKt~ia~~La~~ia~~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~ 72 (332)
T COG4129 10 GARTLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAV 72 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999996899337887777640167615789999999999999999999
No 13
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases; InterPro: IPR004636 This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from Escherichia coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (2.6.1.11 from EC), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism . Members of this family may also act on ornithine, like ornithine aminotransferase (2.6.1.13 from EC) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (2.6.1.17 from EC, DapC, an enzyme of lysine biosynthesis) . ; GO: 0008483 transaminase activity, 0006525 arginine metabolic process.
Probab=27.96 E-value=14 Score=17.32 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=10.1
Q ss_pred HHHHHHH-HHHHCCCHH
Q ss_conf 8999999-873022102
Q gi|254780302|r 92 ILAGFAT-FLGHIFPVW 107 (205)
Q Consensus 92 ~~~~~~a-vlGH~fpi~ 107 (205)
+++|+++ .||||+|=+
T Consensus 34 f~aGIAV~~LGH~hP~l 50 (402)
T TIGR00707 34 FVAGIAVNALGHAHPKL 50 (402)
T ss_pred ECCCHHHHCCCCCCHHH
T ss_conf 10022440113578899
No 14
>KOG2927 consensus
Probab=26.81 E-value=49 Score=14.44 Aligned_cols=16 Identities=19% Similarity=0.345 Sum_probs=9.0
Q ss_pred HHHHHHHHHCCCHHHC
Q ss_conf 9999987302210207
Q gi|254780302|r 94 AGFATFLGHIFPVWLK 109 (205)
Q Consensus 94 ~~~~avlGH~fpi~l~ 109 (205)
..++.++=-.||.+++
T Consensus 200 ~tlaivLFPLWP~~mR 215 (372)
T KOG2927 200 VTLAIVLFPLWPRRMR 215 (372)
T ss_pred HHHHHHHCCCCCHHHH
T ss_conf 9999973135838874
No 15
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=24.02 E-value=45 Score=14.63 Aligned_cols=15 Identities=13% Similarity=0.470 Sum_probs=6.9
Q ss_pred HHHHHHHHCCCHHHC
Q ss_conf 999987302210207
Q gi|254780302|r 95 GFATFLGHIFPVWLK 109 (205)
Q Consensus 95 ~~~avlGH~fpi~l~ 109 (205)
++.+.+|-.||+...
T Consensus 345 ~~vVLlGTlyPli~e 359 (552)
T PRK10369 345 LLIVLVGTLYPMIYG 359 (552)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999988899999
Done!