Query         gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs    127 out of 1912
Neff          6.5 
Searched_HMMs 33803
Date          Wed Jun  1 12:03:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780302.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2k1k_A Ephrin type-A receptor  40.9      19 0.00058   16.2   2.4   27  105-131     3-29  (38)
  2 >1jx6_A LUXP protein; protein-  36.8     9.7 0.00029   17.9   0.3   18  185-202   115-132 (209)
  3 >2p3x_A Polyphenol oxidase, ch  17.6      58  0.0017   13.7   1.4   15  183-197   106-120 (131)
  4 >3eph_A TRNA isopentenyltransf  11.0      51  0.0015   14.0  -0.4   15  186-200    47-61  (66)
  5 >3hhs_A Propo-P2, phenoloxidas  10.3 1.1E+02  0.0033   12.2   1.9   15  183-197    97-111 (122)
  6 >2j5d_A BNIP3 TM, BCL2/adenovi   8.8      99  0.0029   12.5   0.4   20   67-86     11-30  (45)
  7 >3f6t_A Aspartate aminotransfe   8.4 1.3E+02  0.0039   11.8   2.3   37   70-106    61-97  (147)
  8 >1izn_B CAPZ beta-1 subunit; h   8.1      60  0.0018   13.6  -1.0   16  187-202   164-179 (203)
  9 >1bt3_A Protein (catechol oxid   8.1 1.4E+02  0.0041   11.7   1.9   15  182-196   268-282 (345)
 10 >1wxc_A Tyrosinase; tyrosinase   8.0 1.4E+02  0.0041   11.7   2.2   13  183-195    89-101 (127)

No 1  
>>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:)
Probab=40.93  E-value=19  Score=16.24  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=21.4

Q ss_pred             CHHHCCCCHHHHHHHHHHHHHHCHHHH
Q ss_conf             102078762468989999984111000
Q gi|254780302|r  105 PVWLKFKGGKGISTYIGVLIALELKMA  131 (205)
Q Consensus       105 pi~l~FkGGKGvAt~~G~ll~l~p~~~  131 (205)
                      |++.+..||.=||.-+|.+++.....+
T Consensus         3 pv~rgltggeivavifglll~~alllg   29 (38)
T 2k1k_A            3 PVSRGLTGGEIVAVIFGLLLGAALLLG   29 (38)
T ss_dssp             SSSTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCEEHHHHHHHHHHHHHHHH
T ss_conf             755677676308999999999999998


No 2  
>>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:1-156,A:290-342)
Probab=36.82  E-value=9.7  Score=17.86  Aligned_cols=18  Identities=11%  Similarity=0.285  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHCCCCCCC
Q ss_conf             997999999976988644
Q gi|254780302|r  185 WKHIENIKRLILGSEKKI  202 (205)
Q Consensus       185 ~~Hr~NIkRL~~G~E~ki  202 (205)
                      -+||+||.+++..+++|+
T Consensus       115 ~~hrk~Ie~vl~s~~~K~  132 (209)
T 1jx6_A          115 TRHRKFVEHVLDSTNTKL  132 (209)
T ss_dssp             STTHHHHHHHHHHCSCEE
T ss_pred             CCHHHHHHHHHHHCCCEE
T ss_conf             221999999998099859


No 3  
>>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera} (A:162-292)
Probab=17.61  E-value=58  Score=13.71  Aligned_cols=15  Identities=20%  Similarity=0.448  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999979999999769
Q gi|254780302|r  183 VYWKHIENIKRLILG  197 (205)
Q Consensus       183 i~~~Hr~NIkRL~~G  197 (205)
                      ++|.|+.||-||..-
T Consensus       106 iF~lHH~~iDrlw~~  120 (131)
T 2p3x_A          106 IFFGHHANVDRMWNI  120 (131)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             799877709999999


No 4  
>>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:344-409)
Probab=10.97  E-value=51  Score=13.99  Aligned_cols=15  Identities=27%  Similarity=0.335  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHCCCCC
Q ss_conf             979999999769886
Q gi|254780302|r  186 KHIENIKRLILGSEK  200 (205)
Q Consensus       186 ~Hr~NIkRL~~G~E~  200 (205)
                      |||.|++|..+..|.
T Consensus        47 rHk~~~~~~~kr~~~   61 (66)
T 3eph_A           47 RHKSNLKRNTRQADF   61 (66)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             878998777888888


No 5  
>>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, copper, melanin biosynthesis, metal-binding, monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} (A:229-266,A:344-427)
Probab=10.29  E-value=1.1e+02  Score=12.20  Aligned_cols=15  Identities=0%  Similarity=0.226  Sum_probs=8.8

Q ss_pred             HHHHHHHHHHHHHCC
Q ss_conf             999979999999769
Q gi|254780302|r  183 VYWKHIENIKRLILG  197 (205)
Q Consensus       183 i~~~Hr~NIkRL~~G  197 (205)
                      ++|+|++||-|++..
T Consensus        97 iFY~~hk~Id~lf~~  111 (122)
T 3hhs_A           97 FFYRVHAWVDDIFQS  111 (122)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             999999999999999


No 6  
>>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A (A:)
Probab=8.84  E-value=99  Score=12.47  Aligned_cols=20  Identities=20%  Similarity=0.331  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q ss_conf             54450332234553345413
Q gi|254780302|r   67 TLSLDAIKATATIIIVSELF   86 (205)
Q Consensus        67 v~l~D~~Kg~l~v~l~~~~~   86 (205)
                      +|-.|++|.++|-++...++
T Consensus        11 ifSaefLkvfiPSl~lshil   30 (45)
T 2j5d_A           11 IFSAEFLKVFLPSLLLSHLL   30 (45)
T ss_dssp             CSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHH
T ss_conf             37799999998999999999


No 7  
>>3f6t_A Aspartate aminotransferase; YP_194538.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} (A:39-159,A:380-405)
Probab=8.37  E-value=1.3e+02  Score=11.78  Aligned_cols=37  Identities=5%  Similarity=-0.035  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
Q ss_conf             5033223455334541386303899999987302210
Q gi|254780302|r   70 LDAIKATATIIIVSELFDHKIGILAGFATFLGHIFPV  106 (205)
Q Consensus        70 ~D~~Kg~l~v~l~~~~~~~~~~~~~~~~avlGH~fpi  106 (205)
                      .|++|..+.-..-..-++...++.--.-.|+|-+||+
T Consensus        61 g~fL~~~i~Y~~~~lg~d~D~~v~El~dgiiGdnYPv   97 (147)
T 3f6t_A           61 DKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPV   97 (147)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCS
T ss_pred             CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
T ss_conf             7799999999999868997889999997422688989


No 8  
>>1izn_B CAPZ beta-1 subunit; heterodimer, capping protein, actin filament barbed END capping, protein binding; 2.10A {Gallus gallus} (B:46-248)
Probab=8.12  E-value=60  Score=13.64  Aligned_cols=16  Identities=56%  Similarity=0.750  Sum_probs=10.3

Q ss_pred             HHHHHHHHHCCCCCCC
Q ss_conf             7999999976988644
Q gi|254780302|r  187 HIENIKRLILGSEKKI  202 (205)
Q Consensus       187 Hr~NIkRL~~G~E~ki  202 (205)
                      |-.||-||+...|+|+
T Consensus       164 Hi~NiG~lIEdmE~~~  179 (203)
T 1izn_B          164 HIANIGRLVEDMENKI  179 (203)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 9  
>>1bt3_A Protein (catechol oxidase); dicopper enzyme; 2.50A {Ipomoea batatas} (A:)
Probab=8.10  E-value=1.4e+02  Score=11.72  Aligned_cols=15  Identities=20%  Similarity=0.483  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHC
Q ss_conf             999997999999976
Q gi|254780302|r  182 TVYWKHIENIKRLIL  196 (205)
Q Consensus       182 li~~~Hr~NIkRL~~  196 (205)
                      -++|.|+.||-||..
T Consensus       268 PiF~lHH~~iDrlw~  282 (345)
T 1bt3_A          268 IAFYCHHSNVDRMWT  282 (345)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             389998876999999


No 10 
>>1wxc_A Tyrosinase; tyrosinase, binary complex, type-3 copper, oxidoreductase/metal transport complex; 1.20A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A (A:9-92,A:207-249)
Probab=8.03  E-value=1.4e+02  Score=11.70  Aligned_cols=13  Identities=31%  Similarity=0.808  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             9999799999997
Q gi|254780302|r  183 VYWKHIENIKRLI  195 (205)
Q Consensus       183 i~~~Hr~NIkRL~  195 (205)
                      |+|-|+.|+-||.
T Consensus        89 iF~lHH~nvDRlw  101 (127)
T 1wxc_A           89 VFWLHHAYVDKLW  101 (127)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             6888776599999


Done!