Query gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62] Match_columns 205 No_of_seqs 127 out of 1912 Neff 6.5 Searched_HMMs 33803 Date Wed Jun 1 12:03:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780302.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2k1k_A Ephrin type-A receptor 40.9 19 0.00058 16.2 2.4 27 105-131 3-29 (38) 2 >1jx6_A LUXP protein; protein- 36.8 9.7 0.00029 17.9 0.3 18 185-202 115-132 (209) 3 >2p3x_A Polyphenol oxidase, ch 17.6 58 0.0017 13.7 1.4 15 183-197 106-120 (131) 4 >3eph_A TRNA isopentenyltransf 11.0 51 0.0015 14.0 -0.4 15 186-200 47-61 (66) 5 >3hhs_A Propo-P2, phenoloxidas 10.3 1.1E+02 0.0033 12.2 1.9 15 183-197 97-111 (122) 6 >2j5d_A BNIP3 TM, BCL2/adenovi 8.8 99 0.0029 12.5 0.4 20 67-86 11-30 (45) 7 >3f6t_A Aspartate aminotransfe 8.4 1.3E+02 0.0039 11.8 2.3 37 70-106 61-97 (147) 8 >1izn_B CAPZ beta-1 subunit; h 8.1 60 0.0018 13.6 -1.0 16 187-202 164-179 (203) 9 >1bt3_A Protein (catechol oxid 8.1 1.4E+02 0.0041 11.7 1.9 15 182-196 268-282 (345) 10 >1wxc_A Tyrosinase; tyrosinase 8.0 1.4E+02 0.0041 11.7 2.2 13 183-195 89-101 (127) No 1 >>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A (A:) Probab=40.93 E-value=19 Score=16.24 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=21.4 Q ss_pred CHHHCCCCHHHHHHHHHHHHHHCHHHH Q ss_conf 102078762468989999984111000 Q gi|254780302|r 105 PVWLKFKGGKGISTYIGVLIALELKMA 131 (205) Q Consensus 105 pi~l~FkGGKGvAt~~G~ll~l~p~~~ 131 (205) |++.+..||.=||.-+|.+++.....+ T Consensus 3 pv~rgltggeivavifglll~~alllg 29 (38) T 2k1k_A 3 PVSRGLTGGEIVAVIFGLLLGAALLLG 29 (38) T ss_dssp SSSTTCCHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCEEHHHHHHHHHHHHHHHH T ss_conf 755677676308999999999999998 No 2 >>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} (A:1-156,A:290-342) Probab=36.82 E-value=9.7 Score=17.86 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHCCCCCCC Q ss_conf 997999999976988644 Q gi|254780302|r 185 WKHIENIKRLILGSEKKI 202 (205) Q Consensus 185 ~~Hr~NIkRL~~G~E~ki 202 (205) -+||+||.+++..+++|+ T Consensus 115 ~~hrk~Ie~vl~s~~~K~ 132 (209) T 1jx6_A 115 TRHRKFVEHVLDSTNTKL 132 (209) T ss_dssp STTHHHHHHHHHHCSCEE T ss_pred CCHHHHHHHHHHHCCCEE T ss_conf 221999999998099859 No 3 >>2p3x_A Polyphenol oxidase, chloroplast; grenache grapes, oxidoreductase; 2.20A {Vitis vinifera} (A:162-292) Probab=17.61 E-value=58 Score=13.71 Aligned_cols=15 Identities=20% Similarity=0.448 Sum_probs=11.1 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999979999999769 Q gi|254780302|r 183 VYWKHIENIKRLILG 197 (205) Q Consensus 183 i~~~Hr~NIkRL~~G 197 (205) ++|.|+.||-||..- T Consensus 106 iF~lHH~~iDrlw~~ 120 (131) T 2p3x_A 106 IFFGHHANVDRMWNI 120 (131) T ss_dssp THHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 799877709999999 No 4 >>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* (A:344-409) Probab=10.97 E-value=51 Score=13.99 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=12.0 Q ss_pred HHHHHHHHHHCCCCC Q ss_conf 979999999769886 Q gi|254780302|r 186 KHIENIKRLILGSEK 200 (205) Q Consensus 186 ~Hr~NIkRL~~G~E~ 200 (205) |||.|++|..+..|. T Consensus 47 rHk~~~~~~~kr~~~ 61 (66) T 3eph_A 47 RHKSNLKRNTRQADF 61 (66) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 878998777888888 No 5 >>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, copper, melanin biosynthesis, metal-binding, monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta} (A:229-266,A:344-427) Probab=10.29 E-value=1.1e+02 Score=12.20 Aligned_cols=15 Identities=0% Similarity=0.226 Sum_probs=8.8 Q ss_pred HHHHHHHHHHHHHCC Q ss_conf 999979999999769 Q gi|254780302|r 183 VYWKHIENIKRLILG 197 (205) Q Consensus 183 i~~~Hr~NIkRL~~G 197 (205) ++|+|++||-|++.. T Consensus 97 iFY~~hk~Id~lf~~ 111 (122) T 3hhs_A 97 FFYRVHAWVDDIFQS 111 (122) T ss_dssp HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 999999999999999 No 6 >>2j5d_A BNIP3 TM, BCL2/adenovirus E1B 19 kDa protein-interacting protein 3; membrane protein, mitochondrion, transmembrane, transmembrane domain, membrane; NMR {Homo sapiens} PDB: 2ka1_A 2ka2_A (A:) Probab=8.84 E-value=99 Score=12.47 Aligned_cols=20 Identities=20% Similarity=0.331 Sum_probs=13.8 Q ss_pred HHHHHHHHHHHHHHHHHHHC Q ss_conf 54450332234553345413 Q gi|254780302|r 67 TLSLDAIKATATIIIVSELF 86 (205) Q Consensus 67 v~l~D~~Kg~l~v~l~~~~~ 86 (205) +|-.|++|.++|-++...++ T Consensus 11 ifSaefLkvfiPSl~lshil 30 (45) T 2j5d_A 11 IFSAEFLKVFLPSLLLSHLL 30 (45) T ss_dssp CSCHHHHHHHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHH T ss_conf 37799999998999999999 No 7 >>3f6t_A Aspartate aminotransferase; YP_194538.1, structural genomics, joint center for structural genomics, JCSG; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} (A:39-159,A:380-405) Probab=8.37 E-value=1.3e+02 Score=11.78 Aligned_cols=37 Identities=5% Similarity=-0.035 Sum_probs=24.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH Q ss_conf 5033223455334541386303899999987302210 Q gi|254780302|r 70 LDAIKATATIIIVSELFDHKIGILAGFATFLGHIFPV 106 (205) Q Consensus 70 ~D~~Kg~l~v~l~~~~~~~~~~~~~~~~avlGH~fpi 106 (205) .|++|..+.-..-..-++...++.--.-.|+|-+||+ T Consensus 61 g~fL~~~i~Y~~~~lg~d~D~~v~El~dgiiGdnYPv 97 (147) T 3f6t_A 61 DKFLIDAVNYCHTELGLNRDKVVAEWVNGAVANNYPV 97 (147) T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTCSCCS T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC T ss_conf 7799999999999868997889999997422688989 No 8 >>1izn_B CAPZ beta-1 subunit; heterodimer, capping protein, actin filament barbed END capping, protein binding; 2.10A {Gallus gallus} (B:46-248) Probab=8.12 E-value=60 Score=13.64 Aligned_cols=16 Identities=56% Similarity=0.750 Sum_probs=10.3 Q ss_pred HHHHHHHHHCCCCCCC Q ss_conf 7999999976988644 Q gi|254780302|r 187 HIENIKRLILGSEKKI 202 (205) Q Consensus 187 Hr~NIkRL~~G~E~ki 202 (205) |-.||-||+...|+|+ T Consensus 164 Hi~NiG~lIEdmE~~~ 179 (203) T 1izn_B 164 HIANIGRLVEDMENKI 179 (203) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHH T ss_conf 9999999999999999 No 9 >>1bt3_A Protein (catechol oxidase); dicopper enzyme; 2.50A {Ipomoea batatas} (A:) Probab=8.10 E-value=1.4e+02 Score=11.72 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=12.3 Q ss_pred HHHHHHHHHHHHHHC Q ss_conf 999997999999976 Q gi|254780302|r 182 TVYWKHIENIKRLIL 196 (205) Q Consensus 182 li~~~Hr~NIkRL~~ 196 (205) -++|.|+.||-||.. T Consensus 268 PiF~lHH~~iDrlw~ 282 (345) T 1bt3_A 268 IAFYCHHSNVDRMWT 282 (345) T ss_dssp THHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHH T ss_conf 389998876999999 No 10 >>1wxc_A Tyrosinase; tyrosinase, binary complex, type-3 copper, oxidoreductase/metal transport complex; 1.20A {Streptomyces castaneoglobisporus} PDB: 1wx2_A 1wx4_A 1wx5_A 1wx3_A 2ahk_A 2ahl_A 2zmx_A 2zmy_A 2zmz_A (A:9-92,A:207-249) Probab=8.03 E-value=1.4e+02 Score=11.70 Aligned_cols=13 Identities=31% Similarity=0.808 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHHH Q ss_conf 9999799999997 Q gi|254780302|r 183 VYWKHIENIKRLI 195 (205) Q Consensus 183 i~~~Hr~NIkRL~ 195 (205) |+|-|+.|+-||. T Consensus 89 iF~lHH~nvDRlw 101 (127) T 1wxc_A 89 VFWLHHAYVDKLW 101 (127) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 6888776599999 Done!