Query gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 127 out of 1912
Neff 6.5
Searched_HMMs 13730
Date Wed Jun 1 03:35:24 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780302.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eysh2 f.23.10.1 (H:7-43) Pho 27.3 17 0.0012 14.5 2.8 23 170-192 8-30 (37)
2 d1bt3a_ a.86.1.2 (A:) Catechol 10.7 43 0.0032 12.3 2.2 14 183-196 269-282 (341)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 9.2 50 0.0036 12.0 2.8 22 170-191 5-26 (26)
4 d2gmha2 d.16.1.8 (A:237-335) E 8.5 20 0.0015 14.1 -1.3 20 182-201 71-90 (99)
5 d1iznb_ e.43.1.2 (B:) Capz bet 5.3 42 0.0031 12.3 -1.0 15 187-201 208-222 (270)
6 d1zr9a1 g.37.1.4 (A:28-94) Zin 5.1 82 0.0059 10.8 2.0 11 186-196 39-49 (67)
7 d1js8a1 a.86.1.1 (A:2503-2791) 4.3 95 0.0069 10.5 2.2 15 182-196 194-208 (289)
8 d3cjrb1 a.4.7.1 (B:71-137) Rib 3.8 89 0.0065 10.6 -0.3 27 28-58 3-29 (67)
9 d1lnla1 a.86.1.1 (A:-3-304) Mo 3.5 1.1E+02 0.0082 10.1 1.1 15 182-196 209-223 (307)
10 d1hc8a_ a.4.7.1 (A:) Ribosomal 3.4 1.1E+02 0.0084 10.0 2.0 20 28-51 8-27 (74)
No 1
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=27.26 E-value=17 Score=14.49 Aligned_cols=23 Identities=13% Similarity=0.215 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 49999999999999999799999
Q gi|254780302|r 170 VNIPIIFTFMTITVYWKHIENIK 192 (205)
Q Consensus 170 ~~~~~~~~~~~~li~~~Hr~NIk 192 (205)
.....+++..+.+++|-||||.+
T Consensus 8 l~ly~Fw~FFagLi~YL~rE~~R 30 (37)
T d1eysh2 8 ITIWAFWLFFFGLIIYLRREDKR 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999723543
No 2
>d1bt3a_ a.86.1.2 (A:) Catechol oxidase {Sweet potato (Ipomoea batatas) [TaxId: 4120]}
Probab=10.73 E-value=43 Score=12.29 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 99997999999976
Q gi|254780302|r 183 VYWKHIENIKRLIL 196 (205)
Q Consensus 183 i~~~Hr~NIkRL~~ 196 (205)
|+|-|+.||-||..
T Consensus 269 IF~lHHanIDRlW~ 282 (341)
T d1bt3a_ 269 AFYCHHSNVDRMWT 282 (341)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 69887761899999
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.20 E-value=50 Score=11.97 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4999999999999999979999
Q gi|254780302|r 170 VNIPIIFTFMTITVYWKHIENI 191 (205)
Q Consensus 170 ~~~~~~~~~~~~li~~~Hr~NI 191 (205)
..+..+....+.++.|-.+||.
T Consensus 5 laiw~fw~ffalli~ylqten~ 26 (26)
T d1rzhh2 5 LAIYSFWIFLAGLIYYLQTENX 26 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999999850469
No 4
>d2gmha2 d.16.1.8 (A:237-335) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}
Probab=8.49 E-value=20 Score=14.07 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999799999997698864
Q gi|254780302|r 182 TVYWKHIENIKRLILGSEKK 201 (205)
Q Consensus 182 li~~~Hr~NIkRL~~G~E~k 201 (205)
+--|||++-|+++++|-|..
T Consensus 71 lq~fK~HP~I~~ll~GG~~~ 90 (99)
T d2gmha2 71 FQRWKHHPSIKPTLEGGKRI 90 (99)
T ss_dssp HHHHTTSTTTHHHHTTCEEE
T ss_pred HHHHHCCHHHHHHHCCCEEE
T ss_conf 99986598899986698798
No 5
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=5.25 E-value=42 Score=12.34 Aligned_cols=15 Identities=53% Similarity=0.711 Sum_probs=6.9
Q ss_pred HHHHHHHHHCCCCCC
Q ss_conf 799999997698864
Q gi|254780302|r 187 HIENIKRLILGSEKK 201 (205)
Q Consensus 187 Hr~NIkRL~~G~E~k 201 (205)
|-.||-||+...|+|
T Consensus 208 Hi~NiG~mIEdmE~~ 222 (270)
T d1iznb_ 208 HIANIGRLVEDMENK 222 (270)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 888898899999999
No 6
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.14 E-value=82 Score=10.82 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=9.1
Q ss_pred HHHHHHHHHHC
Q ss_conf 97999999976
Q gi|254780302|r 186 KHIENIKRLIL 196 (205)
Q Consensus 186 ~Hr~NIkRL~~ 196 (205)
+|++++++|..
T Consensus 39 kHKrrvk~L~~ 49 (67)
T d1zr9a1 39 DHKKRLKQLSV 49 (67)
T ss_dssp HHHHHHHHHTS
T ss_pred HHHHHHHHHCC
T ss_conf 89999999612
No 7
>d1js8a1 a.86.1.1 (A:2503-2791) Mollusc hemocyanin {Giant octopus (Octopus dofleini) [TaxId: 267067]}
Probab=4.27 E-value=95 Score=10.47 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999997999999976
Q gi|254780302|r 182 TVYWKHIENIKRLIL 196 (205)
Q Consensus 182 li~~~Hr~NIkRL~~ 196 (205)
=++|-|+.||-||..
T Consensus 194 PiF~lHHaniDRlw~ 208 (289)
T d1js8a1 194 PLFYLHHSNTDRIWS 208 (289)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 899999987889999
No 8
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=3.77 E-value=89 Score=10.63 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=16.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 7999999995599811478988789999997
Q gi|254780302|r 28 PFGLLLTRMFGFQDIRSIGSGNIGATNVLRT 58 (205)
Q Consensus 28 p~~~~i~k~~~~~Dir~~GsgN~GatN~~r~ 58 (205)
|.++++-|..+ + +.||++||...+..+
T Consensus 3 P~s~llkkaag---i-~kGs~~p~~e~vG~i 29 (67)
T d3cjrb1 3 PASYLIRKAAG---L-EKGAHKPGREKVGRI 29 (67)
T ss_dssp CHHHHHC-----------------------C
T ss_pred CHHHHHHHHHC---C-CCCCCCCCCCCCCEE
T ss_conf 67999999978---8-867799998403416
No 9
>d1lnla1 a.86.1.1 (A:-3-304) Mollusc hemocyanin {Mollusca (Rapana thomasiana) [TaxId: 29165]}
Probab=3.46 E-value=1.1e+02 Score=10.07 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999997999999976
Q gi|254780302|r 182 TVYWKHIENIKRLIL 196 (205)
Q Consensus 182 li~~~Hr~NIkRL~~ 196 (205)
-++|-|+.||-||..
T Consensus 209 PiF~lHH~niDRlw~ 223 (307)
T d1lnla1 209 PVFILHHSNTDRLFA 223 (307)
T ss_dssp THHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 699999988999999
No 10
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.38 E-value=1.1e+02 Score=10.03 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=0.0
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHH
Q ss_conf 799999999559981147898878
Q gi|254780302|r 28 PFGLLLTRMFGFQDIRSIGSGNIG 51 (205)
Q Consensus 28 p~~~~i~k~~~~~Dir~~GsgN~G 51 (205)
|.++++-|..+- +.||++||
T Consensus 8 P~s~llkkaagi----~kGs~~p~ 27 (74)
T d1hc8a_ 8 PAAVLLKKAAGI----ESGSGEPN 27 (74)
T ss_dssp CHHHHHHHHHTC----SCCCSSTT
T ss_pred CHHHHHHHHHCC----CCCCCCCC
T ss_conf 899999999788----86768778
Done!