RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate
acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>gnl|CDD|178934 PRK00220, PRK00220, putative glycerol-3-phosphate acyltransferase
PlsY; Provisional.
Length = 198
Score = 189 bits (482), Expect = 5e-49
Identities = 80/192 (41%), Positives = 121/192 (63%), Gaps = 1/192 (0%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
++ ++L+Y +GSIPF LL+ ++FG D R GSGN GATNVLR KK A ATL DA+K
Sbjct: 6 LLLILLAYLLGSIPFALLVGKLFGLPDPREHGSGNPGATNVLRIGGKKAAIATLLGDALK 65
Query: 75 ATATIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133
T +++ D L A LGHIFPV+ KFKGGKG++T GVL+ + +A++
Sbjct: 66 GTLAVLLAYLFGLDPISLGLIALAAVLGHIFPVFFKFKGGKGVATAAGVLLGIGPLLALI 125
Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193
+A W+ AL+T YSS+++L + LI + +W P+ I +++ + ++H +NI+R
Sbjct: 126 LAATWLLVALLTRYSSLAALVAALIAPIYVWWFPPDWQFTIPVALLSVLIIYRHRDNIQR 185
Query: 194 LILGSEKKIFKK 205
L+ G+E KI K
Sbjct: 186 LLAGTESKIGWK 197
>gnl|CDD|184657 PRK14396, PRK14396, membrane protein; Provisional.
Length = 190
Score = 141 bits (357), Expect = 1e-34
Identities = 85/187 (45%), Positives = 118/187 (63%), Gaps = 3/187 (1%)
Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77
L SY IGSIPF +L ++F +D+RS+GSGNIGATNV R NK ++F L LD K+
Sbjct: 6 LFASYLIGSIPFSWILVKVFYKRDLRSVGSGNIGATNVFRV-NKGISFLVLLLDIFKSAL 64
Query: 78 TIIIVSELFDHK-IGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSA 136
I+I+ ++ HK I L GF LGHIFPVW FKGGKGI+ IGV++++ +K+ LF
Sbjct: 65 VILILEKMCAHKSILYLTGFTVVLGHIFPVWFLFKGGKGIAPTIGVVLSINIKIFFLFII 124
Query: 137 IWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLIL 196
W ++ YSS+SS+ S +I + I N I + M+I + KH +NI R+I
Sbjct: 125 TWAVVFMIFRYSSLSSIIS-IISSCIYCAVTENFNSSIFYIAMSIIILIKHRDNIIRMIN 183
Query: 197 GSEKKIF 203
G+EKK+F
Sbjct: 184 GTEKKLF 190
>gnl|CDD|172870 PRK14394, PRK14394, membrane protein; Provisional.
Length = 195
Score = 141 bits (356), Expect = 1e-34
Identities = 85/186 (45%), Positives = 116/186 (62%), Gaps = 3/186 (1%)
Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77
IL Y IGSIPFG +L+ + G DIR GSGNIGATNV R NKKLA TL LDA+K+
Sbjct: 8 FILCYLIGSIPFGFILSYVGGIGDIRKTGSGNIGATNVFR-KNKKLALLTLLLDALKSFI 66
Query: 78 TIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSA 136
+ I + D+ I LA +GH+FPV+L FKGGKG++ +G LI ++ K+AI F
Sbjct: 67 CVAIAQKYNIDNTILFLAALFAIIGHMFPVYLFFKGGKGVAPLLGSLIFIDYKVAICFLT 126
Query: 137 IWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLIL 196
W+ L+ Y+S+SS+ STLI + I TY + +IFT + + +H +NI R++
Sbjct: 127 FWIICFLLCKYASLSSIVSTLIALLFIC-TYYTIVQSVIFTITALLIITQHTDNIIRMLN 185
Query: 197 GSEKKI 202
SE KI
Sbjct: 186 KSENKI 191
>gnl|CDD|161669 TIGR00023, TIGR00023, acyl-phosphate glycerol 3-phosphate
acyltransferase. This model represents the full length
of acylphosphate:glycerol 3-phosphate acyltransferase,
and integral membrane protein about 200 amino acids in
length, called PlsY in Streptococcus pneumoniae, YneS in
Bacillus subtilis, and YgiH in E. coli. It is found in a
single copy in a large number of bacteria, including the
Mycoplasmas but not Mycobacteria or spirochetes, for
example. Its partner is PlsX (see TIGR00182), and the
pair can replace PlsB for synthesizing
1-acylglycerol-3-phosphate.
Length = 196
Score = 140 bits (356), Expect = 2e-34
Identities = 70/192 (36%), Positives = 108/192 (56%), Gaps = 2/192 (1%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
+ L++ Y IGSIPF L+ ++ DIR GSGN GATNVLRT K A L D +K
Sbjct: 6 VFLLLIGYLIGSIPFAYLVGKILKGIDIREHGSGNPGATNVLRTLGVKAALLVLIFDILK 65
Query: 75 ATATIIIVSELF-DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133
+ + L + L A LGHIFP++ KFKGGKG++T G L+ + + ++
Sbjct: 66 GMLAVALSFLLGLFDFLPGLVAIAAVLGHIFPIFFKFKGGKGVATSGGSLLPISPWLFLI 125
Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193
A W+ LVT Y S+SS+ + +++ + + + I T + I V ++H NI+R
Sbjct: 126 MLATWLFVTLVTKYVSLSSIVTAIVLPFYVLWFHLP-YLYIPVTLLLIFVIYRHRANIQR 184
Query: 194 LILGSEKKIFKK 205
L+ G+E K+++K
Sbjct: 185 LLNGTEPKVWQK 196
>gnl|CDD|172876 PRK14400, PRK14400, membrane protein; Provisional.
Length = 201
Score = 132 bits (334), Expect = 6e-32
Identities = 70/192 (36%), Positives = 106/192 (55%), Gaps = 8/192 (4%)
Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77
+ Y GSIPFG++L R+ D+R++GSGNIGATNV R KKL L LDA KA
Sbjct: 11 VAAGYLAGSIPFGVVLGRLVLGVDVRTVGSGNIGATNVARAGGKKLGVLVLLLDAAKAIV 70
Query: 78 TIIIVSELFD-----HKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132
I++ L + A F+GH++PVWL FKGGKG++T +G+ + L A+
Sbjct: 71 PILVARRLLAGTPHAELWVVAVALAAFVGHLYPVWLGFKGGKGVATGLGIFLVLAPWAAL 130
Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTIT--VYWKHIEN 190
+ + + +T SS+ SL T + + TY P+ + + I ++ +H EN
Sbjct: 131 AGAVGYAVAYGLTRISSVGSLTGTALCVAGGFATYG-PRHPVSWAGLAIALLIFVRHREN 189
Query: 191 IKRLILGSEKKI 202
I+RL+ G EK++
Sbjct: 190 IRRLVRGEEKRV 201
>gnl|CDD|184670 PRK14419, PRK14419, membrane protein; Provisional.
Length = 199
Score = 130 bits (330), Expect = 2e-31
Identities = 64/192 (33%), Positives = 108/192 (56%), Gaps = 1/192 (0%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
++ ++L+Y +GS P G L R D+R IGSG+ GATNVLR K A +D K
Sbjct: 5 LLIILLAYLLGSFPSGYLAGRWLKGIDLREIGSGSTGATNVLRNVGKGPALFVFIIDVGK 64
Query: 75 ATATIIIVSELF-DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133
+++ L + +LAG A LGHI+PVWL FKGGK ++T +G+L+AL + +
Sbjct: 65 GVLAVLLAYALGLQPWLQVLAGLAALLGHIWPVWLGFKGGKAVATGLGMLLALSWPVGLA 124
Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193
I++ ++ S+SS+ + + + +++++ + + + V W+H NI+R
Sbjct: 125 SLGIFLIVLALSRIVSLSSISAAIALPLLMFLLNIPLPYILFSLAAGLLVIWRHRSNIER 184
Query: 194 LILGSEKKIFKK 205
L+ G+E KI +K
Sbjct: 185 LLAGTEPKIGQK 196
>gnl|CDD|172869 PRK14393, PRK14393, membrane protein; Provisional.
Length = 194
Score = 128 bits (323), Expect = 1e-30
Identities = 72/196 (36%), Positives = 114/196 (58%), Gaps = 5/196 (2%)
Query: 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSL 70
+ I+ L+ +Y +GSIP GLLL + G DIR+ GSGNIGATNV RT +K+ TL
Sbjct: 1 MTNEILLLVGAYLLGSIPTGLLLAKAVGV-DIRNTGSGNIGATNVYRTLGRKVGILTLIG 59
Query: 71 DAIKATATIIIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELK 129
D +K ++I +L + I G A FLGH++ V+L FKGGKG++T +GV + L
Sbjct: 60 DCLKGLVPVLIARKLGLPDLWIAAVGLAAFLGHVYTVFLGFKGGKGVATALGVFLGLS-P 118
Query: 130 MAILFS-AIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHI 188
+++L + AI++ Y S+ S+ + + +++ T + + + + V +KH
Sbjct: 119 LSVLGALAIFVLLVAKWRYVSLGSITAAAAMPLLVAFTEGSPLLVAMTVVIALIVIFKHR 178
Query: 189 ENIKRLILGSEKKIFK 204
ENI+RL G+E + FK
Sbjct: 179 ENIQRLRAGTENR-FK 193
>gnl|CDD|172874 PRK14398, PRK14398, membrane protein; Provisional.
Length = 191
Score = 125 bits (315), Expect = 9e-30
Identities = 76/189 (40%), Positives = 115/189 (60%), Gaps = 5/189 (2%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
I LILSY +GSIPF L++T++ G ++R +GSGNIGATNV RT NK LA L LD++K
Sbjct: 4 YIVLILSYILGSIPFSLIITKIKGI-NLREVGSGNIGATNVARTGNKFLAALALFLDSLK 62
Query: 75 ATATIIIVSELFDHKIGIL--AGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132
+ I + D+ + + LGH+FP+WLKF GGKG++T +G+LIAL + + +
Sbjct: 63 GFIAVYIAQQFCDNNDFYIYVSAILAVLGHMFPIWLKFSGGKGVATTLGILIALNISITL 122
Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIK 192
F +W+ YSS++SL +T A + W + + N+ + + I ++ KH NI
Sbjct: 123 AFVFVWLIVFFAFRYSSLASLSAT--SAAVAWSFFFQRNLFLTLLTVAILIFLKHYRNIV 180
Query: 193 RLILGSEKK 201
L+ G E+K
Sbjct: 181 NLLQGRERK 189
>gnl|CDD|172873 PRK14397, PRK14397, membrane protein; Provisional.
Length = 222
Score = 122 bits (308), Expect = 6e-29
Identities = 70/194 (36%), Positives = 101/194 (52%), Gaps = 6/194 (3%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
++ + +Y +GSIPFGL+ R F D R+ GS N+GATNV R K TL D +K
Sbjct: 4 LLWIATAYVMGSIPFGLVFARTFCGIDPRTGGSRNVGATNVARLCGTKWGVLTLVCDVLK 63
Query: 75 ATATIIIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133
+ + + D + L A LGH++ +L F+GGK ++T IGV I L +L
Sbjct: 64 GAVPVAVAMSISDSPVFHSLTALAALLGHLYSCFLGFRGGKAVATTIGVFIPLAFWQLLL 123
Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAM--IIWITYPEVNIPIIFTFMTITVYWKHIENI 191
+ + +G+ S+ SL TL+ A+ ++ IT IP+ M + VYW H ENI
Sbjct: 124 SGILCLLVIWRSGFVSLGSL--TLVTALPVMLLITGKWKLIPLALVVMAL-VYWSHRENI 180
Query: 192 KRLILGSEKKIFKK 205
RL G EK KK
Sbjct: 181 GRLARGEEKPWQKK 194
>gnl|CDD|172879 PRK14403, PRK14403, membrane protein; Provisional.
Length = 196
Score = 111 bits (280), Expect = 1e-25
Identities = 64/185 (34%), Positives = 110/185 (59%), Gaps = 2/185 (1%)
Query: 19 ILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATAT 78
IL Y IGSIPF L+ + D+R +GSGN+GATN +RT+ + L LDA+K
Sbjct: 8 ILGYFIGSIPFSYLIPKWLKGIDVRKVGSGNVGATNAIRTTGPVVGGICLLLDALKGFFP 67
Query: 79 IIIVSELF-DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILFSAI 137
+ I + D K+ L AT LGH FP+++KFKGGKG+++ +G++ L ++F+
Sbjct: 68 VFIATTFSGDPKLVSLTAIATVLGHDFPIFMKFKGGKGVASTLGIIFCLSWPTGLVFTLT 127
Query: 138 WMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLILG 197
W+ ++T Y+S+ SL + + A++ ++ + ++ + + +H ENI+RL+ G
Sbjct: 128 WLVIVMLTKYASLGSLVALYVSALLGYL-LKGYDTGMLILILAVLSTLRHSENIQRLLNG 186
Query: 198 SEKKI 202
+E+K+
Sbjct: 187 TERKV 191
>gnl|CDD|184661 PRK14405, PRK14405, membrane protein; Provisional.
Length = 202
Score = 109 bits (274), Expect = 6e-25
Identities = 76/201 (37%), Positives = 111/201 (55%), Gaps = 9/201 (4%)
Query: 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSL 70
+I +++++LSY +GS+ F L+ + DIR GSGN GATN LR K A L L
Sbjct: 1 MILLLLAVVLSYLLGSVSFSYLIAKKIKGIDIRQHGSGNAGATNTLRVLGKGPAILVLLL 60
Query: 71 DAIKATATIIIVSELFDHKIGI---LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE 127
D +K A + I L LAG A +GH +P++ F+GGKGI+T IGV+ L
Sbjct: 61 DVVKGIAAVWIGRLLTGDGAAWFPALAGLAAIIGHNWPIYFGFRGGKGIATTIGVVATLV 120
Query: 128 LKMAILFSAIWMSSALVTGYSSISSL-FSTLIIAMIIWITYPEVNIPIIFTFMTITV--Y 184
A++ I + S ++T Y S+ SL F TL ++ YP IP I+ + I + +
Sbjct: 121 FLPALIAGVIAIISIVITRYVSLGSLLFVTLTPVLLYIFDYP---IPYIWLSLIIAIFAF 177
Query: 185 WKHIENIKRLILGSEKKIFKK 205
W+H NI RL+ G+E K+ KK
Sbjct: 178 WRHRTNIVRLLSGTENKLGKK 198
>gnl|CDD|184659 PRK14402, PRK14402, membrane protein; Provisional.
Length = 198
Score = 108 bits (272), Expect = 9e-25
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 2/192 (1%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
+++L+L+Y GSIP G + R G DIR +GSGN GATNVLR+ K A D +K
Sbjct: 6 VLALLLAYLFGSIPAGAWVARTRGV-DIRKVGSGNSGATNVLRSLGKGPALVVAFFDVLK 64
Query: 75 ATATIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAIL 133
+++ L D L A LGH + +L+F+GGKG++T G L+ L+ +A+L
Sbjct: 65 GGIAVLLARALGLDGMWAGLVAVAAVLGHNYSPFLRFRGGKGVATSFGTLLFLDPVLALL 124
Query: 134 FSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKR 193
+ ++ +T + S S+ + ++ + + ++W H ENI+R
Sbjct: 125 TFPVGVACMWLTRFVSAGSMIGAVTAGVLALALGRPLWEVATVVLLAALLFWTHRENIRR 184
Query: 194 LILGSEKKIFKK 205
L G+E+++ +K
Sbjct: 185 LQAGTERRLGEK 196
>gnl|CDD|172882 PRK14406, PRK14406, membrane protein; Provisional.
Length = 199
Score = 107 bits (269), Expect = 2e-24
Identities = 67/187 (35%), Positives = 110/187 (58%), Gaps = 4/187 (2%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
I ++I+ Y IG+IPF ++ ++ G DIR +GSGN+G TNVLR + LD +K
Sbjct: 3 IYAIIIGYFIGAIPFSFIIPKLKGI-DIRKVGSGNVGGTNVLRNAGAGYGALAFFLDIMK 61
Query: 75 ATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILF 134
A ++IV F ++AG GH + ++LKFKGGKG++T GV +A+ ++F
Sbjct: 62 AYVAVLIVKN-FGINAMLMAGAMAVFGHCYSIFLKFKGGKGVATTFGVFLAIFPWSGLVF 120
Query: 135 SAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRL 194
IW++ +T Y S++S+ ++A I+ + + +IF +T+ +H ENIKRL
Sbjct: 121 FGIWLAIVALTKYVSLASIIG--LLAASIFTFFFGKDYWVIFLALTLFSVLRHKENIKRL 178
Query: 195 ILGSEKK 201
+ G+E+K
Sbjct: 179 LNGNERK 185
>gnl|CDD|184664 PRK14412, PRK14412, membrane protein; Provisional.
Length = 198
Score = 106 bits (267), Expect = 3e-24
Identities = 63/191 (32%), Positives = 105/191 (54%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
++ I++Y IG I + T+ DIR+ GSGN GATNVLR K A +LD +K
Sbjct: 4 VLVAIIAYLIGCINNAYIFTKYTRKIDIRNYGSGNAGATNVLRVLGYKAAAPVFALDVLK 63
Query: 75 ATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAILF 134
++I L ++AG A GH +PV+LKF+GGKGI+T +GV++ + + I+
Sbjct: 64 GVIAVLIGKYLMGTTGAMIAGIAVVCGHNWPVFLKFRGGKGIATSVGVVMTVSPLLGIIA 123
Query: 135 SAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRL 194
AI ++ +T Y S+ S+ ++ ++ I + + + + ++H NIKRL
Sbjct: 124 LAIGVAIIALTKYVSLGSITGSVTFVLLNAIFWNSTQLFVFSLILASLAIFQHRSNIKRL 183
Query: 195 ILGSEKKIFKK 205
+ G+E K+ +K
Sbjct: 184 LAGTESKLGQK 194
>gnl|CDD|172868 PRK14392, PRK14392, membrane protein; Provisional.
Length = 207
Score = 102 bits (257), Expect = 5e-23
Identities = 68/187 (36%), Positives = 109/187 (58%), Gaps = 3/187 (1%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
I+ IL+Y IG+IP G+ + ++F DIR GSGNIG TN R L LD +K
Sbjct: 4 ILMFILAYLIGAIPSGVWIGKLFYHTDIRQAGSGNIGTTNTYRVLGPVAGTIVLVLDILK 63
Query: 75 AT--ATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132
T A++ I+ + H + +L G A LGH F ++++FKGGK ++T G+L+A +
Sbjct: 64 GTLAASLPILFGISHHWLPLLVGLAAVLGHTFSIFIRFKGGKAVATSAGILLAYNPPFFV 123
Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIK 192
+ SAIW S L+T S++S+ ++I II + Y + + + +T+ V+++H NIK
Sbjct: 124 IASAIWFSLILLTSMVSVASMIGMVLIT-IISLVYHDWLLTTVACGLTVVVFYRHRSNIK 182
Query: 193 RLILGSE 199
R+ G+E
Sbjct: 183 RIKAGTE 189
>gnl|CDD|184666 PRK14415, PRK14415, membrane protein; Provisional.
Length = 216
Score = 103 bits (257), Expect = 5e-23
Identities = 75/210 (35%), Positives = 117/210 (55%), Gaps = 21/210 (10%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
++ +I+SY +GSIPFG L++ DIRS GSG GATNVLRT +K A SLD IK
Sbjct: 7 LLVVIVSYILGSIPFGYLVSHRGSKIDIRSFGSGRTGATNVLRTMGRKAALLVASLDVIK 66
Query: 75 ATATIIIVSELFDHK---IG----------ILAGFATFLGHIFPVWLKFKGGKGISTYIG 121
+ + + + G +LAG A GHI+PV+LKF+GG+G++T+ G
Sbjct: 67 GASAVAFAGLVIGTEALAFGTNGMALLFAQVLAGLAAVAGHIWPVFLKFRGGRGVATFFG 126
Query: 122 VLIALELKMAILFSAIWMSSALVTGYSSISSLFS-----TLIIAMIIWITYP-EVNIPII 175
+IAL AI + + A ++G++S+ S+ L++ + + +P E I +
Sbjct: 127 GMIALCPVAAIFGGEVLIIGAGLSGFASLGSITGVVGAYALLVPLTLISGFPTEYMIYAV 186
Query: 176 FTFMTITVYWKHIENIKRLILGSEKKIFKK 205
+ IT+ H +NIKRL+ G E+K+ +K
Sbjct: 187 IGSLLITIM--HRDNIKRLLAGKERKLNEK 214
>gnl|CDD|184669 PRK14418, PRK14418, membrane protein; Provisional.
Length = 236
Score = 102 bits (256), Expect = 7e-23
Identities = 72/229 (31%), Positives = 112/229 (48%), Gaps = 33/229 (14%)
Query: 10 ELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLS 69
++ + +L Y IGSI F +++++ F DIR GS N GATN LR K+A +
Sbjct: 6 SILINLALFLLGYLIGSINFSIIVSKRFKKDDIREHGSKNAGATNSLRNFGAKIALVVFA 65
Query: 70 LDAIKATATIIIVSELFDHK--------IGILAGFATFLGHIFPVWLKFKGGKGISTYIG 121
LD +K I+IVS + + I G +GHIFP++ KFKGGKG + +G
Sbjct: 66 LDVLKTLLAILIVSIVVNFVPAVNAFYVIPQAVGLGVVIGHIFPIYFKFKGGKGAACTVG 125
Query: 122 VLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNI--------- 172
++I++ + +A++ I++ + S+ SL + + + +WI +
Sbjct: 126 LIISINIILALIAGIIFLLVIFIWKIVSLGSLITAFSLLLFMWIPWMSQGPLGYWTYAVE 185
Query: 173 ---------------PIIFTFMTITVYWKHIENIKRLILGSEKKI-FKK 205
PII+T + V W H ENIKRLI SE+K FKK
Sbjct: 186 YTNSFTTLVGYWYVSPIIYTLAALLVLWSHRENIKRLIKKSERKFKFKK 234
>gnl|CDD|172875 PRK14399, PRK14399, membrane protein; Provisional.
Length = 258
Score = 96.5 bits (240), Expect = 5e-21
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 7/160 (4%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
I++ + Y +GSI + +++ + G DIR++GSGN GATN +R KK LDA+K
Sbjct: 12 ILASVFGYFLGSISWSIIIVKKVGNIDIRTVGSGNPGATNTVRILGKKWGLVVAFLDALK 71
Query: 75 ATATIIIV-------SELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE 127
T I +ELF + +GH +P++ KFKGGK +S ++G+L +
Sbjct: 72 VLFTAIFAILLSMIPNELFSQTSYFIPCIFALIGHCWPIYYKFKGGKAVSCFLGLLFVVN 131
Query: 128 LKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITY 167
I+F +W S ++ S++S+FS I +I+WI Y
Sbjct: 132 YLYLIIFLIVWFISVAISRKVSVASIFSAATILLIMWIPY 171
>gnl|CDD|172885 PRK14409, PRK14409, membrane protein; Provisional.
Length = 205
Score = 91.8 bits (228), Expect = 1e-19
Identities = 63/194 (32%), Positives = 99/194 (51%), Gaps = 10/194 (5%)
Query: 16 ISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKA 75
I + S+ GSIPFG + F DIR GS NIGATNV R K F L LDA+K
Sbjct: 4 IFALFSFISGSIPFGYWIALRFRGIDIRKHGSKNIGATNVGRVIGWKFGFIVLLLDALKG 63
Query: 76 TATIIIVSELFDH---KIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKMAI 132
+ + + +L G LGH+F +L FKGGKG++T +GV + L +
Sbjct: 64 AVPVYLSASYIPEGGVPFQLLCGVVAVLGHMFSPFLGFKGGKGVATTLGVFLVLTPIACV 123
Query: 133 LFSAIWMSSALVTGYSSISSLFSTLIIAMI-----IWITYPEVNIPIIFT--FMTITVYW 185
++ + + S+ S+F++L + ++ I + + EV+ I+ T F++ +
Sbjct: 124 GAIVVFFVVYKIFKFVSLGSIFASLTLPLVYAFSSILLLHEEVSYWILGTMVFISFGIIL 183
Query: 186 KHIENIKRLILGSE 199
H ENI+R++ SE
Sbjct: 184 THRENIRRILNRSE 197
>gnl|CDD|184662 PRK14410, PRK14410, membrane protein; Provisional.
Length = 235
Score = 90.2 bits (224), Expect = 3e-19
Identities = 57/225 (25%), Positives = 99/225 (44%), Gaps = 37/225 (16%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
+ L +SY IGSIP ++ ++ DIR+ GSGN G TN R K +D K
Sbjct: 5 LAILAVSYLIGSIPTSIIAGKLLKGIDIRNFGSGNAGGTNAFRVLGWKAGLLVTLIDIGK 64
Query: 75 ATATIIIVSELFDHK------------IGILAGFATFLGHIFPVWLKFKGGKGISTYIGV 122
+ V F + +LAG + +GH+F V+ FKGGKG+ST G+
Sbjct: 65 GVVAAVSVVAFFRIHPIGAFPDINEVALRLLAGMSAVIGHVFTVFAGFKGGKGVSTAAGM 124
Query: 123 LIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWI--------TYPEVNIPI 174
LI + ++ +++ L + Y S++S+ + + +II I + + I +
Sbjct: 125 LIGIAPVSMLIVLGVFLLVVLSSRYVSVASILAAIAFPLIIAIRKYVFELGSGLDYYIRL 184
Query: 175 IFT-----------------FMTITVYWKHIENIKRLILGSEKKI 202
+ + + + H NI+RL+ G+E ++
Sbjct: 185 FGESFSFHDSLDYHLLIFGLIVALAIIYTHRANIRRLLSGTENRV 229
>gnl|CDD|172871 PRK14395, PRK14395, membrane protein; Provisional.
Length = 195
Score = 88.5 bits (219), Expect = 1e-18
Identities = 54/189 (28%), Positives = 93/189 (49%), Gaps = 2/189 (1%)
Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77
I++Y +G+IPF R G D+R GSGNIG TN R KL L DA+K
Sbjct: 7 FIIAYLLGAIPFAYWAGRYKGM-DVRKHGSGNIGTTNAFRLLGAKLGVLVLLGDALKGAL 65
Query: 78 TIIIVSELFDHKIGILAGFATFLGHIFPVWLKFK-GGKGISTYIGVLIALELKMAILFSA 136
+ F GI+AG GH + + FK GKG+++ G+++ L K+ ++
Sbjct: 66 AAYLGYRFFGPWGGIIAGLLAMAGHSWNPFFGFKPSGKGVASGFGIILVLMPKITVMAIV 125
Query: 137 IWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIENIKRLIL 196
+++ +T Y S+ S+ + L + +++++ + + V +H NI+R++
Sbjct: 126 LFVLVVFLTRYVSVGSVLAALTVGILVFLFNEPMAYKVFAVIAVSGVVIRHRTNIQRVLK 185
Query: 197 GSEKKIFKK 205
G+E K K
Sbjct: 186 GTENKFNLK 194
>gnl|CDD|172883 PRK14407, PRK14407, membrane protein; Provisional.
Length = 219
Score = 83.8 bits (207), Expect = 3e-17
Identities = 59/213 (27%), Positives = 99/213 (46%), Gaps = 20/213 (9%)
Query: 12 IAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLD 71
IA + L ++Y +GS P G L ++ DIR GS + GATNVLRT K A L +D
Sbjct: 5 IAGAVGLAIAYLLGSTPTGYLAGKLLKGIDIREHGSKSTGATNVLRTLGKWPAVVVLLVD 64
Query: 72 AIKATATIIIVS--------------------ELFDHKIGILAGFATFLGHIFPVWLKFK 111
+K I+ + + LAG A LGH VWL F
Sbjct: 65 VLKGVGAIVFARWFCQWLSTVPSATPPAALDLQSLEPWAVCLAGLAVLLGHGRSVWLNFT 124
Query: 112 GGKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVN 171
GGK ++ +GVL+A+ + + + ++ + ++ S+SS+ + L ++ +
Sbjct: 125 GGKSVAAGLGVLLAMSWPVGLGAATVFGVALAISRIVSLSSMLAALTAIALVCGLEQPLP 184
Query: 172 IPIIFTFMTITVYWKHIENIKRLILGSEKKIFK 204
++ + V +H NI+RL+ G+E ++ K
Sbjct: 185 YRLLVIAGGVYVIVRHRANIRRLLAGTEPRLGK 217
>gnl|CDD|184668 PRK14417, PRK14417, membrane protein; Provisional.
Length = 232
Score = 79.5 bits (196), Expect = 5e-16
Identities = 44/113 (38%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
+I + Y +G+IP LL+R DIR GSGN+GA+NV++T+ K+L A D K
Sbjct: 6 LIMIPAGYLVGAIPMAYLLSRWRRGIDIRRYGSGNVGASNVIKTAGKRLGLAVFVFDVSK 65
Query: 75 ATATIIIVSEL-FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126
I++ L + I+ G AT GH +PV+L+F GG+GI+T +GV + +
Sbjct: 66 GALMILLAGWLGLELWQQIVVGLATIAGHNWPVFLRFNGGRGIATSLGVALVM 118
>gnl|CDD|184665 PRK14414, PRK14414, membrane protein; Provisional.
Length = 210
Score = 78.0 bits (192), Expect = 2e-15
Identities = 52/176 (29%), Positives = 92/176 (52%), Gaps = 2/176 (1%)
Query: 9 HELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATL 68
+ LI II+LI +Y IGS P L R+F DIR++GS N+G+ NV L
Sbjct: 2 NSLIMVIIALIAAYFIGSTPAPYLAGRIFKGIDIRTVGSKNMGSMNVFYNVGFWPGILVL 61
Query: 69 SLDAIKATATIIIVSELFDHK-IGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE 127
++D K + + + L + I +L GH +PVWLKFKGGKG +T IG+L +
Sbjct: 62 AVDIGKGALAMAVANWLGEGLGIQMLCALMAIAGHNYPVWLKFKGGKGGATAIGILAYMM 121
Query: 128 LKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITV 183
+ ++ A ++ +T + ++S S + ++ W+ ++ ++F+ + + +
Sbjct: 122 PEGIPIYIACFLILMAITRFPTLSYGISFISFILVAWLGQHDM-GKVLFSLLVVMI 176
>gnl|CDD|172889 PRK14413, PRK14413, membrane protein; Provisional.
Length = 197
Score = 76.4 bits (188), Expect = 4e-15
Identities = 64/194 (32%), Positives = 101/194 (52%), Gaps = 8/194 (4%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIK 74
II+ ++S+ +GSIP G +T+ DIR+ GSGNIG+TNV R K++ T +D +K
Sbjct: 4 IITSVISFLLGSIPTGYFITKKLCGIDIRTKGSGNIGSTNVKRIVGTKISIITQIIDVLK 63
Query: 75 ATATI---IIVSELFDHKIGI-----LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126
+ I +S++ + + A LGH + +LKFKGGKG++T +GV I +
Sbjct: 64 GIIPVVLGISLSKIVKLPVSTDTYLSIIAIAAILGHDYTPFLKFKGGKGVNTTLGVFIFI 123
Query: 127 ELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWK 186
+ A++ L T SI S+ + I ++ IT + I I T I + +
Sbjct: 124 APIPTLTGLAVYFILGLFTRIVSIRSIAIGITIPIMCIITKLPIQIIISTTIACILMIIR 183
Query: 187 HIENIKRLILGSEK 200
H +N+ RLI EK
Sbjct: 184 HKDNLVRLIRNEEK 197
>gnl|CDD|172884 PRK14408, PRK14408, membrane protein; Provisional.
Length = 257
Score = 76.2 bits (187), Expect = 5e-15
Identities = 53/170 (31%), Positives = 89/170 (52%), Gaps = 15/170 (8%)
Query: 11 LIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSL 70
++ IIS + SY IGS+ ++L+ +F QD+R S N G TN++R KKL TL L
Sbjct: 12 ILTLIISPLYSYLIGSLNASIILSLVFKKQDVRLFASKNAGMTNMIRVHGKKLGILTLFL 71
Query: 71 DAIKATATI--------------IIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKG 115
D IK T+ +S F+ I + G T +GH +P++ KF+GGKG
Sbjct: 72 DIIKPITTVSLTYIIYKYALDAPFDLSNGFNQAILVYFGGIFTIIGHCYPIFFKFQGGKG 131
Query: 116 ISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWI 165
++ Y G LI ++ +A++ + L+T Y S+S++ + ++ +
Sbjct: 132 VACYGGFLITVDPIVALIGIITLLVILLITKYMSLSAMITATFTCFLVLV 181
>gnl|CDD|184667 PRK14416, PRK14416, membrane protein; Provisional.
Length = 200
Score = 70.7 bits (173), Expect = 3e-13
Identities = 46/147 (31%), Positives = 67/147 (45%), Gaps = 14/147 (9%)
Query: 24 IGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVS 83
+GSIP L+TR +DIR +G GN+G N R A + +D +K + +
Sbjct: 2 LGSIPSAYLVTRRLTGRDIRQMGGGNVGGLNTFREVGTGAGIAVVFIDLVKGALAVSVSY 61
Query: 84 ELF--DHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALE---------LKMAI 132
L + + IL GFA +GH + VWL FKGGKG+ G ++ L +A+
Sbjct: 62 YLLTQNAQWVILTGFAAVIGHNWSVWLDFKGGKGLGPAFGAMLFLLPVYGLPQQLGILAL 121
Query: 133 LFSAIWMSS---ALVTGYSSISSLFST 156
L + AL TG + S F
Sbjct: 122 LVFIPLALTRNIALATGIALFSLPFLV 148
>gnl|CDD|184663 PRK14411, PRK14411, membrane protein; Provisional.
Length = 204
Score = 57.1 bits (138), Expect = 3e-09
Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 3/192 (1%)
Query: 12 IAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLD 71
+A + ++ Y G+ +++ ++F +D GSGN G N+ KK T D
Sbjct: 1 MARFWATLIGYVFGNFLTAMIVGKIFLHKDPTKYGSGNPGTANMGAVFGKKWGILTCIGD 60
Query: 72 AIKATATIIIVSELFDHKIGI-LAGFATFLGHIFPVWLKFKGGKGISTYIGVLIALELKM 130
+K + IV ++ + I AG LGH FP+W FKGGKG++ V + + +
Sbjct: 61 LLKTLIALFIVYFIYHGHLNIAYAGLGVVLGHCFPIWNHFKGGKGVAVTAQVAVFYDWRA 120
Query: 131 AILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIEN 190
++ I + + +I L L+ ++ + E ++F +T+ + +K ++
Sbjct: 121 GLITLLIALVLTAIMQNLTIPPLVFMLLFSIYTFWNNQEAG--LVFLIITLIMIFKFRKD 178
Query: 191 IKRLILGSEKKI 202
I G K++
Sbjct: 179 IVDFFTGHGKRV 190
>gnl|CDD|184660 PRK14404, PRK14404, membrane protein; Provisional.
Length = 201
Score = 53.8 bits (130), Expect = 3e-08
Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 19 ILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATAT 78
+L + GS+ F + ++ G +D+R + GN GA N+ R + K L LD +K
Sbjct: 7 LLQFLSGSLMFSYWIGKIVG-KDLRKVRDGNPGAFNLWRAAGWKYGLLGLFLDFLKGYFP 65
Query: 79 IIIVSEL--FDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126
++ E + + I+A A LGH F +LKFKGGK I+T GV AL
Sbjct: 66 LVYFVEKGYINGWVIIIAALAGILGHAFSPFLKFKGGKAIATTFGVWSAL 115
>gnl|CDD|184658 PRK14401, PRK14401, membrane protein; Provisional.
Length = 187
Score = 51.7 bits (124), Expect = 1e-07
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 4/109 (3%)
Query: 18 LILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSNKKLAFATLSLDAIKATA 77
+L+Y +GS+ G+L +R G +DIR G + R A + D +K A
Sbjct: 6 AVLAYLLGSLVAGVLYSRARG-EDIR--ERDLPGGSGTYRQFGPGAALLVAAADILKGVA 62
Query: 78 TIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126
++ L LAG A GH +PV+ +F+GG GI+ +G + L
Sbjct: 63 AALLARWLAPPAT-WLAGAAVVAGHCWPVFFRFRGGGGIAPTLGFFLVL 110
>gnl|CDD|184220 PRK13663, PRK13663, hypothetical protein; Provisional.
Length = 493
Score = 29.9 bits (68), Expect = 0.48
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 17/52 (32%)
Query: 71 DAIKATATIIIV--------------SELF-DHKIGILAGFATFLGHIFPVW 107
D I+ T +++V S+L+ D K GI AG+A F FPVW
Sbjct: 162 DYIETTRPLVVVTAPGPGSGKLATCLSQLYHDQKRGIKAGYAKF--ETFPVW 211
>gnl|CDD|149841 pfam08903, DUF1846, Domain of unknown function (DUF1846). This
family of proteins are functionally uncharacterized.
Some members of the family are annotated as
ATP-dependent peptidases. However, we can find no
support for this annotation.
Length = 491
Score = 28.8 bits (65), Expect = 1.0
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 17/52 (32%)
Query: 71 DAIKATATIIIV--------------SELF-DHKIGILAGFATFLGHIFPVW 107
+ I+ T +++V S+L+ +HK GI AG+A F FP+W
Sbjct: 161 EYIETTRPLVVVTAPGPGSGKLATCLSQLYHEHKRGIKAGYAKF--ETFPIW 210
>gnl|CDD|181775 PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone
4-phosphate synthase/GTP cyclohydrolase II protein;
Provisional.
Length = 339
Score = 27.2 bits (61), Expect = 3.2
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 58 TSNKKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFAT----FL--GHIFPVWLKFK 111
TSN + AF T+S+DA K T I E D I +LA + F+ GHIFP+ K
Sbjct: 78 TSNHETAF-TVSIDA-KEATTGISAFER-DMTIKLLADDTSKPSDFVRPGHIFPLIAK-D 133
Query: 112 GG 113
GG
Sbjct: 134 GG 135
>gnl|CDD|151521 pfam11076, YbhQ, Putative inner membrane protein YbhQ. This family
is conserved in Proteobacteria. The function is not
known but most members are annotated as being inner
membrane protein YbhQ.
Length = 133
Score = 27.2 bits (60), Expect = 3.3
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 113 GKGISTYIGVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNI 172
G+S + I L L + L WMS ALV+ + +L++ ++AM++ + E
Sbjct: 10 ATGLSCWQ---IMLHLLVVALLVMGWMSGALVSVGLGLCALYALTVVAMLVLQRHHEPRW 66
Query: 173 PIIFTFM-TITVYW 185
+ F+ +T W
Sbjct: 67 REVADFLEELTTTW 80
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 26.4 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 15 IISLILSYAIGSIPFGLLLTRMFGFQD 41
I+S + YA G + FG++L M G Q
Sbjct: 296 ILSSQMDYA-GGVKFGIMLAEMHGTQQ 321
>gnl|CDD|131112 TIGR02057, PAPS_reductase, phosphoadenosine phosphosulfate
reductase, thioredoxin dependent. Requiring
thioredoxin as an electron donor, phosphoadenosine
phosphosulfate reductase catalyzes the reduction of
3'-phosphoadenylylsulfate (PAPS) to sulfite and
phospho-adenosine-phosphate (PAP). Found in
enterobacteria, cyanobacteria, and yeast, PAPS
reductase is related to a group of plant (TIGR00424)
and bacterial (TIGR02055) enzymes preferring
5'-adenylylsulfate (APS) over PAPS as a substrate for
reduction to sulfite.
Length = 226
Score = 26.3 bits (58), Expect = 5.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 19 ILSYAIGSIPFGLLLTRMFGFQDIRSI 45
I++++I + P GL+ T FG Q + ++
Sbjct: 16 IIAWSIVTFPHGLVQTSAFGIQALVTL 42
>gnl|CDD|150023 pfam09195, Endonuc-BglII, Restriction endonuclease BglII. Members
of this family are predominantly found in prokaryotic
restriction endonuclease BglII, and adopt a structure
consisting of an alpha/beta core containing a
six-stranded beta-sheet surrounded by five
alpha-helices, two of which are involved in
homodimerization of the endonuclease. They recognize the
double-stranded DNA sequence AGATCT and cleave after
A-1, resulting in specific double-stranded fragments
with terminal 5'-phosphates.
Length = 153
Score = 26.1 bits (58), Expect = 6.4
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 2 NNLQFAYHELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSG 48
N F Y +L+ L + +I G+++T F I IGSG
Sbjct: 85 GNYDFFYRDLLK----FQLFHNSDAIDVGIIITPTKSFAKI--IGSG 125
>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed.
Length = 307
Score = 25.5 bits (57), Expect = 9.1
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 17/63 (26%)
Query: 45 IGSGNIGATNVLRTSNKKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFATFLGHIF 104
IG+GN+GAT LA L A+K ++ LFD G+ G A +
Sbjct: 8 IGAGNVGAT---------LAH----LLALKELGDVV----LFDIVEGVPQGKALDIAEAA 50
Query: 105 PVW 107
PV
Sbjct: 51 PVE 53
>gnl|CDD|162521 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent.
The annotation of Botryococcus braunii as lactate
dehydrogenase appears top be in error. This was
initially annotated as MDH by Swiss-Prot and then
changed. The rationale for either of these annotations
is not traceable.
Length = 305
Score = 25.6 bits (56), Expect = 9.3
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 42 IRSIGSGNIGATNVLRTSNKKLA 64
I IG+G +GAT R + K+LA
Sbjct: 4 ISVIGAGFVGATTAFRLAEKELA 26
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.328 0.142 0.417
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,351,245
Number of extensions: 214277
Number of successful extensions: 834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 98
Length of query: 205
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,071,361
Effective search space: 472277876
Effective search space used: 472277876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.0 bits)