RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62] (205 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 37.6 bits (87), Expect = 0.002 Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 71/181 (39%) Query: 17 SLILSYAIGSIPFGLLL-TRMFGFQDIRSIGSGNIGATNVLRTS-NKKLAFATLSLDAIK 74 L LS+ GS+ LL+ T F A+ L+ NK L T + Sbjct: 8 PLTLSH--GSLEHVLLVPTASFFI------------AS-QLQEQFNKILPEPT---EGFA 49 Query: 75 ATATIIIVSELFDHKIGILAGFATFLGHI-----------FPVWLK---------FKGGK 114 A +EL FLG++ F L + G Sbjct: 50 ADDEPTTPAELV----------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99 Query: 115 GISTYIGVL-----IALELKMAIL---FSAIWMS---------SALV----TGYSSISSL 153 I L L ++ +A M+ SAL G + + ++ Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159 Query: 154 F 154 F Sbjct: 160 F 160 Score = 31.5 bits (71), Expect = 0.15 Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 85/196 (43%) Query: 8 YHELIAPIISLI---LSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVL-------- 56 YH L+ +I LS L+ + + + G N+L Sbjct: 180 YHVLVGDLIKFSAETLSE---------LIRTTLDAEKVFTQG------LNILEWLENPSN 224 Query: 57 RTSNKKLAFATLSLDAI--------KATATIIIVS--ELFDHKIGILAGFATFLGHIFPV 106 L +S I TA ++ + EL + L G AT GH Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY----LKG-AT--GH---- 273 Query: 107 WLKFKGGKGISTYIGVLIALELKMAILFSAIWMS---SALVTGYSSISSLFSTLIIAMII 163 S G++ A +AI + W S S +I+ LF Sbjct: 274 ----------SQ--GLVTA----VAIAETDSWESFFVSVR----KAITVLF--------- 304 Query: 164 WI------TYPEVNIP 173 +I YP ++P Sbjct: 305 FIGVRCYEAYPNTSLP 320 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 37.7 bits (86), Expect = 0.002 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 9/24 (37%) Query: 61 KKLAFATLSL---D-----AIKAT 76 KKL A+L L D AIKAT Sbjct: 23 KKLQ-ASLKLYADDSAPALAIKAT 45 >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A Length = 302 Score = 31.2 bits (70), Expect = 0.19 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 7/66 (10%) Query: 134 FSAIWMSSALVT----GYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIE 189 F A++M+ A G + + + A I+ + P+I T + Sbjct: 39 FDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADT---GYGGPI 95 Query: 190 NIKRLI 195 + R Sbjct: 96 MVARTT 101 >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2- propyl-3-methylmalate lyase; 2.70A {Dianthus caryophyllus} Length = 318 Score = 29.4 bits (65), Expect = 0.57 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%) Query: 134 FSAIWMSSALVT----GYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIE 189 F A ++S V+ G L +T ++ IT N+ ++ T Sbjct: 60 FHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDT---GGGGPL 116 Query: 190 NIKRLI 195 N++R I Sbjct: 117 NVQRFI 122 >3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129} Length = 507 Score = 28.1 bits (63), Expect = 1.6 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 17/52 (32%) Query: 71 DAIKATATIIIV--------------SELF-DHKIGILAGFATFLGHIFPVW 107 + + T +++V S+++ +HK G+ AG+A F FP+W Sbjct: 167 EYAETTRDLVVVTAPGPGSGKLATCLSQVYHEHKRGVAAGYAKF--ETFPIW 216 >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A Length = 307 Score = 26.6 bits (58), Expect = 3.7 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 134 FSAIWMSSALVT----GY--SSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKH 187 F +++M+ A T G +I+ L A +I P P+I T + Sbjct: 46 FKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDP-FGPPLIADMDTG---YGG 101 Query: 188 IENIKRLI 195 + R + Sbjct: 102 PIMVARTV 109 >1sdo_A Bstyi; restriction endonuclease, hydrolase; 1.85A {Geobacillus stearothermophilus} SCOP: c.52.1.21 PDB: 1vrr_A 2p0j_A Length = 203 Score = 26.5 bits (58), Expect = 4.1 Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 3/48 (6%) Query: 2 NNLQFAYHELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGN 49 F ++L + Y I G+ + M S G Sbjct: 132 GKYSFVAYDLFVK---HMAFYVSDKIDVGVEILPMKELSKEMSSGISY 176 >1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A {Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A* 1y8z_A* Length = 401 Score = 26.0 bits (57), Expect = 5.9 Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 7/38 (18%) Query: 165 ITYPEVNIPIIFTFMTIT-------VYWKHIENIKRLI 195 + P ++ F YWK + I I Sbjct: 162 LFDDIEEAPTVYNFQPPMDIVKVRSTYWKDVSEINMNI 199 >3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei} Length = 140 Score = 25.8 bits (56), Expect = 8.3 Identities = 7/29 (24%), Positives = 13/29 (44%) Query: 104 FPVWLKFKGGKGISTYIGVLIALELKMAI 132 P + F G+ + +G + LK A+ Sbjct: 79 TPTFKFFCHGRPVWEQVGQIYPSILKNAV 107 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.328 0.142 0.417 Gapped Lambda K H 0.267 0.0455 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,714,594 Number of extensions: 74318 Number of successful extensions: 293 Number of sequences better than 10.0: 1 Number of HSP's gapped: 291 Number of HSP's successfully gapped: 38 Length of query: 205 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 117 Effective length of database: 3,559,758 Effective search space: 416491686 Effective search space used: 416491686 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 54 (25.3 bits)