RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate
acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
(205 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 37.6 bits (87), Expect = 0.002
Identities = 34/181 (18%), Positives = 52/181 (28%), Gaps = 71/181 (39%)
Query: 17 SLILSYAIGSIPFGLLL-TRMFGFQDIRSIGSGNIGATNVLRTS-NKKLAFATLSLDAIK 74
L LS+ GS+ LL+ T F A+ L+ NK L T +
Sbjct: 8 PLTLSH--GSLEHVLLVPTASFFI------------AS-QLQEQFNKILPEPT---EGFA 49
Query: 75 ATATIIIVSELFDHKIGILAGFATFLGHI-----------FPVWLK---------FKGGK 114
A +EL FLG++ F L + G
Sbjct: 50 ADDEPTTPAELV----------GKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN 99
Query: 115 GISTYIGVL-----IALELKMAIL---FSAIWMS---------SALV----TGYSSISSL 153
I L L ++ +A M+ SAL G + + ++
Sbjct: 100 DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 154 F 154
F
Sbjct: 160 F 160
Score = 31.5 bits (71), Expect = 0.15
Identities = 38/196 (19%), Positives = 59/196 (30%), Gaps = 85/196 (43%)
Query: 8 YHELIAPIISLI---LSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVL-------- 56
YH L+ +I LS L+ + + + G N+L
Sbjct: 180 YHVLVGDLIKFSAETLSE---------LIRTTLDAEKVFTQG------LNILEWLENPSN 224
Query: 57 RTSNKKLAFATLSLDAI--------KATATIIIVS--ELFDHKIGILAGFATFLGHIFPV 106
L +S I TA ++ + EL + L G AT GH
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY----LKG-AT--GH---- 273
Query: 107 WLKFKGGKGISTYIGVLIALELKMAILFSAIWMS---SALVTGYSSISSLFSTLIIAMII 163
S G++ A +AI + W S S +I+ LF
Sbjct: 274 ----------SQ--GLVTA----VAIAETDSWESFFVSVR----KAITVLF--------- 304
Query: 164 WI------TYPEVNIP 173
+I YP ++P
Sbjct: 305 FIGVRCYEAYPNTSLP 320
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.7 bits (86), Expect = 0.002
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 9/24 (37%)
Query: 61 KKLAFATLSL---D-----AIKAT 76
KKL A+L L D AIKAT
Sbjct: 23 KKLQ-ASLKLYADDSAPALAIKAT 45
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A
{Aspergillus niger} PDB: 3fa3_A
Length = 302
Score = 31.2 bits (70), Expect = 0.19
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 134 FSAIWMSSALVT----GYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIE 189
F A++M+ A G + + + A I+ + P+I T +
Sbjct: 39 FDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADT---GYGGPI 95
Query: 190 NIKRLI 195
+ R
Sbjct: 96 MVARTT 101
>1zlp_A PSR132, petal death protein; TIM-barrel, helix
swapping,2-ethyl-3-methylmalate lyase, 2-
propyl-3-methylmalate lyase; 2.70A {Dianthus
caryophyllus}
Length = 318
Score = 29.4 bits (65), Expect = 0.57
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 134 FSAIWMSSALVT----GYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKHIE 189
F A ++S V+ G L +T ++ IT N+ ++ T
Sbjct: 60 FHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDT---GGGGPL 116
Query: 190 NIKRLI 195
N++R I
Sbjct: 117 NVQRFI 122
>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function,
protein structure initiative, PSI-2; 2.51A
{Corynebacterium diphtheriae NCTC13129}
Length = 507
Score = 28.1 bits (63), Expect = 1.6
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 17/52 (32%)
Query: 71 DAIKATATIIIV--------------SELF-DHKIGILAGFATFLGHIFPVW 107
+ + T +++V S+++ +HK G+ AG+A F FP+W
Sbjct: 167 EYAETTRDLVVVTAPGPGSGKLATCLSQVYHEHKRGVAAGYAKF--ETFPIW 216
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A
{Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Length = 307
Score = 26.6 bits (58), Expect = 3.7
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 134 FSAIWMSSALVT----GY--SSISSLFSTLIIAMIIWITYPEVNIPIIFTFMTITVYWKH 187
F +++M+ A T G +I+ L A +I P P+I T +
Sbjct: 46 FKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDP-FGPPLIADMDTG---YGG 101
Query: 188 IENIKRLI 195
+ R +
Sbjct: 102 PIMVARTV 109
>1sdo_A Bstyi; restriction endonuclease, hydrolase; 1.85A {Geobacillus
stearothermophilus} SCOP: c.52.1.21 PDB: 1vrr_A 2p0j_A
Length = 203
Score = 26.5 bits (58), Expect = 4.1
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 2 NNLQFAYHELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGN 49
F ++L + Y I G+ + M S G
Sbjct: 132 GKYSFVAYDLFVK---HMAFYVSDKIDVGVEILPMKELSKEMSSGISY 176
>1xv5_A AGT, DNA alpha-glucosyltransferase; HET: DNA CME UDP; 1.73A
{Enterobacteria phage T4} PDB: 1y6f_A* 1y6g_A* 1ya6_A*
1y8z_A*
Length = 401
Score = 26.0 bits (57), Expect = 5.9
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 7/38 (18%)
Query: 165 ITYPEVNIPIIFTFMTIT-------VYWKHIENIKRLI 195
+ P ++ F YWK + I I
Sbjct: 162 LFDDIEEAPTVYNFQPPMDIVKVRSTYWKDVSEINMNI 199
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 25.8 bits (56), Expect = 8.3
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 104 FPVWLKFKGGKGISTYIGVLIALELKMAI 132
P + F G+ + +G + LK A+
Sbjct: 79 TPTFKFFCHGRPVWEQVGQIYPSILKNAV 107
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.328 0.142 0.417
Gapped
Lambda K H
0.267 0.0455 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,714,594
Number of extensions: 74318
Number of successful extensions: 293
Number of sequences better than 10.0: 1
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 38
Length of query: 205
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 117
Effective length of database: 3,559,758
Effective search space: 416491686
Effective search space used: 416491686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.3 bits)