BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate
acyltransferase PlsY [Candidatus Liberibacter asiaticus str. psy62]
         (205 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780302|ref|YP_003064715.1| putative glycerol-3-phosphate acyltransferase PlsY [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 205

 Score =  402 bits (1032), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 205/205 (100%), Positives = 205/205 (100%)

Query: 1   MNNLQFAYHELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSN 60
           MNNLQFAYHELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSN
Sbjct: 1   MNNLQFAYHELIAPIISLILSYAIGSIPFGLLLTRMFGFQDIRSIGSGNIGATNVLRTSN 60

Query: 61  KKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYI 120
           KKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYI
Sbjct: 61  KKLAFATLSLDAIKATATIIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYI 120

Query: 121 GVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMT 180
           GVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMT
Sbjct: 121 GVLIALELKMAILFSAIWMSSALVTGYSSISSLFSTLIIAMIIWITYPEVNIPIIFTFMT 180

Query: 181 ITVYWKHIENIKRLILGSEKKIFKK 205
           ITVYWKHIENIKRLILGSEKKIFKK
Sbjct: 181 ITVYWKHIENIKRLILGSEKKIFKK 205


>gi|254781047|ref|YP_003065460.1| AFG1-family ATPase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 404

 Score = 23.5 bits (49), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 79  IIIVSELFDHKIGILAGFATFLGHIFPVWLKFKGGKGISTYIGVLIAL 126
           I+++   ++HKIG++      +  +FP  L+ KG   I   +  L  +
Sbjct: 322 IMLIDVFYEHKIGLIISSEENIEDLFPYKLR-KGAFEIQRTVSRLYEM 368


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 23.1 bits (48), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 172 IPIIFTFMTITVYWKHIENIKRLILGSEKKIF 203
           IP++ + +TI    KH  N KR I  +E K F
Sbjct: 453 IPMMQSRLTIRDNVKHYANRKRSIHDAENKSF 484


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.142    0.417 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 126,455
Number of Sequences: 1233
Number of extensions: 4713
Number of successful extensions: 25
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 8
length of query: 205
length of database: 328,796
effective HSP length: 70
effective length of query: 135
effective length of database: 242,486
effective search space: 32735610
effective search space used: 32735610
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 36 (18.5 bits)