HHsearch alignment of GI: 254780303 and MMDB domain: 2a1j_A_

>2a1j_A (A:) DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens}

Probab=92.62  E-value=0.11  Score=30.46  Aligned_cols=36  Identities=14%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             HHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH-HHHHH
Q ss_conf             9986589689999999997499999999709-99996
Q gi|254780303|r   23 RLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQR   58 (77)
Q Consensus        23 RL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP-~la~r   58 (77)
                      .|..-|+|||.+...|+++|||-++..+|-- +|.+=
T Consensus         5 ~L~~IpgVG~~~a~~Ll~~f~Si~~i~~As~eeL~~i   41 (63)
T 2a1j_A            5 FLLKMPGVNAKNCRSLMHHVKNIAELAALSQDELTSI   41 (63)
T ss_dssp             HHHTSTTCCHHHHHHHHHHCSSHHHHHTCCHHHHHHH
T ss_pred             HHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHC
T ss_conf             8851999899999999998078999986999999778