HHsearch results for GI: 254780303 and protein with PDBid: 3maj_A

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=99.44  E-value=3.5e-13  Score=94.87  Aligned_cols=71  Identities=42%  Similarity=0.721  Sum_probs=65.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf             11248788999999999998658968999999999749999999970999996145588767898997540
Q gi|254780303|r    6 PLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQKK   76 (77)
Q Consensus         6 ~~~~~~~ls~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la~rgG~~~~~ri~s~~~Ae~E   76 (77)
                      +-+.-..|||+|+++||+|.++++|||.|+++|+++|||++++++++|++.++.|..+..++.+.++|++|
T Consensus        10 ~~~~~~~~t~~e~l~wl~L~~~~giG~~~~~~Ll~~fgs~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   80 (382)
T 3maj_A           10 SDQGTTVLTEAQRIDWMRLIRAENVGPRTFRSLINHFGSARAALERLPELARRGGAARAGRIPSEDEARRE   80 (382)
T ss_dssp             ---CCCCSCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHHHHHHHHHHHHTCSSCCCCCCHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             77788889999999999998289964999999999839999999779999987635665427998899999