HHSEARCH alignment of GI: 254780303 and SCOP domain: d2a1ja1

Alignment

Probab=91.58  E-value=0.073  Score=29.34  Aligned_cols=30  Identities=10%  Similarity=0.361  Sum_probs=25.9

Q ss_pred             HHHCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             986589689999999997499999999709
Q gi|254780303|r   24 LIRSDNISPATCRDMINYFGSAEQALEMIP   53 (77)
Q Consensus        24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP   53 (77)
                      |..-|+||+.+...|+++|||-++...|--
T Consensus         5 L~~iPGIg~~~~~~Ll~~f~Si~~l~~As~   34 (62)
T d2a1ja1           5 LLKMPGVNAKNCRSLMHHVKNIAELAALSQ   34 (62)
T ss_dssp             HHTSTTCCHHHHHHHHHHCSSHHHHHTCCH
T ss_pred             HHCCCCCCHHHHHHHHHHHCCHHHHHHCCH
T ss_conf             766999999999999998524999986999

SCOP domain information

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA repair endonuclease XPF
species: Human (Homo sapiens) [TaxId: 9606]