Query         gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 77
No_of_seqs    102 out of 154
Neff          3.5 
Searched_HMMs 13730
Date          Wed Jun  1 02:09:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780303.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2bgwa1 a.60.2.5 (A:160-229) D  95.0   0.017 1.2E-06   32.9   4.8   51   11-61      2-53  (70)
  2 d1kfta_ a.60.2.3 (A:) Excinucl  92.9   0.021 1.5E-06   32.4   1.9   33   24-56      4-36  (56)
  3 d1rxwa1 a.60.7.1 (A:220-324) F  92.5    0.12 8.8E-06   28.1   5.4   41   13-53      1-47  (105)
  4 d1xo1a1 a.60.7.1 (A:186-290) T  91.7   0.054 3.9E-06   30.1   2.8   28   27-54     24-51  (105)
  5 d2a1ja1 a.60.2.5 (A:837-898) D  91.6   0.073 5.3E-06   29.3   3.4   30   24-53      5-34  (62)
  6 d1ul1x1 a.60.7.1 (X:218-357) F  90.9   0.072 5.3E-06   29.4   2.8   42   13-54      1-48  (140)
  7 d1x2ia1 a.60.2.5 (A:2-69) ATP-  90.8    0.21 1.5E-05   26.7   5.1   42   13-55      2-43  (68)
  8 d1a77a1 a.60.7.1 (A:209-316) F  87.4    0.18 1.3E-05   27.1   2.8   43   13-55      1-50  (108)
  9 d2a1jb1 a.60.2.5 (B:219-296) D  85.5    0.24 1.8E-05   26.4   2.6   32   24-55     21-52  (78)
 10 d2i1qa1 a.60.4.1 (A:5-64) DNA   85.1    0.23 1.7E-05   26.5   2.4   37   25-61      2-40  (60)
 11 d1pzna1 a.60.4.1 (A:35-95) DNA  81.2    0.41   3E-05   25.1   2.3   35   26-60      5-41  (61)
 12 d1b43a1 a.60.7.1 (A:220-339) F  74.8    0.77 5.6E-05   23.5   2.2   25   27-51     22-46  (120)
 13 d2csba3 a.60.2.4 (A:410-464) T  61.5     3.4 0.00025   19.9   3.2   28   23-50      3-30  (55)
 14 d1dgsa1 a.60.2.2 (A:401-581) N  55.1     3.9 0.00028   19.6   2.6   34   21-54    106-139 (181)
 15 d1bvsa2 a.60.2.1 (A:64-134) DN  48.7     9.2 0.00067   17.4   5.7   37   14-51      1-37  (71)
 16 d1cmwa1 a.60.7.1 (A:174-289) 5  44.3    0.69 5.1E-05   23.8  -2.6   27   27-53     23-49  (116)
 17 d1ixra1 a.60.2.1 (A:63-135) DN  43.6      11 0.00081   17.0   5.5   38   14-52      2-39  (73)
 18 d1cuka2 a.60.2.1 (A:65-142) DN  30.3      18  0.0013   15.7   5.8   37   14-51      1-37  (78)

No 1  
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}
Probab=94.96  E-value=0.017  Score=32.91  Aligned_cols=51  Identities=18%  Similarity=0.230  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHCC
Q ss_conf             78899999999999865896899999999974999999997099-9996145
Q gi|254780303|r   11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPE-LAQRGAV   61 (77)
Q Consensus        11 ~~ls~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~-la~rgG~   61 (77)
                      +.+++-+.+.+.-|---|+|||++-.+|+++|||..+.+.|-++ |+.=.|.
T Consensus         2 ~~~~~~~~~~~~~L~~IpgIG~~~a~~L~~~F~s~~~l~~As~eeL~~v~GI   53 (70)
T d2bgwa1           2 PRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGI   53 (70)
T ss_dssp             CCCCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTC
T ss_pred             CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHCCCCC
T ss_conf             8858899989999808999579999999998298899988699999757998


No 2  
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=92.86  E-value=0.021  Score=32.43  Aligned_cols=33  Identities=15%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf             986589689999999997499999999709999
Q gi|254780303|r   24 LIRSDNISPATCRDMINYFGSAEQALEMIPELA   56 (77)
Q Consensus        24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la   56 (77)
                      |-.-|+|||.+...|+++|||-++...|-++=.
T Consensus         4 L~~I~gVG~~~a~~L~~~F~s~~~i~~As~eeL   36 (56)
T d1kfta_           4 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI   36 (56)
T ss_dssp             GGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             535898009999999999399999998649999


No 3  
>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=92.49  E-value=0.12  Score=28.10  Aligned_cols=41  Identities=22%  Similarity=0.325  Sum_probs=33.3

Q ss_pred             CCHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             899999999999865------89689999999997499999999709
Q gi|254780303|r   13 LTDDQKISWLRLIRS------DNISPATCRDMINYFGSAEQALEMIP   53 (77)
Q Consensus        13 ls~~erlawLRL~Rt------~~VGp~Tf~~Ll~~fGsA~aAL~aLP   53 (77)
                      ||.++-++.+=|.=|      ++|||.|...||+.|||-+..++.+.
T Consensus         1 lt~eq~iD~~~L~GsDn~pGV~GIG~ktA~kli~~~gsle~i~~~~~   47 (105)
T d1rxwa1           1 LTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK   47 (105)
T ss_dssp             CCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             98999999999958878889999378999999999399899999887


No 4  
>d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]}
Probab=91.70  E-value=0.054  Score=30.09  Aligned_cols=28  Identities=18%  Similarity=0.391  Sum_probs=25.1

Q ss_pred             CCCCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             5896899999999974999999997099
Q gi|254780303|r   27 SDNISPATCRDMINYFGSAEQALEMIPE   54 (77)
Q Consensus        27 t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~   54 (77)
                      -++|||.|...||+.|||-+..+++++.
T Consensus        24 V~GiG~KtA~kli~~~gsle~i~~~~~~   51 (105)
T d1xo1a1          24 VEGIGAKRGYNIIREFGNVLDIIDQLPL   51 (105)
T ss_dssp             CTTCCHHHHHHHHHHHCSHHHHHHHCSC
T ss_pred             CCCCCHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             5884789999999870265899986887


No 5  
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}
Probab=91.58  E-value=0.073  Score=29.34  Aligned_cols=30  Identities=10%  Similarity=0.361  Sum_probs=25.9

Q ss_pred             HHHCCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             986589689999999997499999999709
Q gi|254780303|r   24 LIRSDNISPATCRDMINYFGSAEQALEMIP   53 (77)
Q Consensus        24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP   53 (77)
                      |..-|+||+.+...|+++|||-++...|--
T Consensus         5 L~~iPGIg~~~~~~Ll~~f~Si~~l~~As~   34 (62)
T d2a1ja1           5 LLKMPGVNAKNCRSLMHHVKNIAELAALSQ   34 (62)
T ss_dssp             HHTSTTCCHHHHHHHHHHCSSHHHHHTCCH
T ss_pred             HHCCCCCCHHHHHHHHHHHCCHHHHHHCCH
T ss_conf             766999999999999998524999986999


No 6  
>d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.93  E-value=0.072  Score=29.37  Aligned_cols=42  Identities=24%  Similarity=0.330  Sum_probs=33.4

Q ss_pred             CCHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             899999999999865------896899999999974999999997099
Q gi|254780303|r   13 LTDDQKISWLRLIRS------DNISPATCRDMINYFGSAEQALEMIPE   54 (77)
Q Consensus        13 ls~~erlawLRL~Rt------~~VGp~Tf~~Ll~~fGsA~aAL~aLP~   54 (77)
                      ||.++-++..=|+=|      ++|||.|...||..||+-+..++.+..
T Consensus         1 l~~~q~id~~~L~GsD~~pgv~gIG~ktA~kli~~~~~le~i~~~~~~   48 (140)
T d1ul1x1           1 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP   48 (140)
T ss_dssp             CCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             988999999998287789899982399999999993999999999998


No 7  
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=90.81  E-value=0.21  Score=26.73  Aligned_cols=42  Identities=19%  Similarity=0.222  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             8999999999998658968999999999749999999970999
Q gi|254780303|r   13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL   55 (77)
Q Consensus        13 ls~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l   55 (77)
                      |+-.|+.-. -|---|+|||.+...|+++|||-++.+.|-.+-
T Consensus         2 ~~~~~~~~~-~L~~I~gIG~~~a~~L~~~f~s~~~i~~As~ee   43 (68)
T d1x2ia1           2 LTLAERQRL-IVEGLPHVSATLARRLLKHFGSVERVFTASVAE   43 (68)
T ss_dssp             CCHHHHHHH-HHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHH
T ss_pred             CCHHHHHHH-HHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             988999999-981899968999999999749999998858999


No 8  
>d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=87.43  E-value=0.18  Score=27.14  Aligned_cols=43  Identities=7%  Similarity=0.012  Sum_probs=32.3

Q ss_pred             CCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             89999999999986-------58968999999999749999999970999
Q gi|254780303|r   13 LTDDQKISWLRLIR-------SDNISPATCRDMINYFGSAEQALEMIPEL   55 (77)
Q Consensus        13 ls~~erlawLRL~R-------t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l   55 (77)
                      ||.+|-++..=|.=       -++|||.|...||..|||-+..++.....
T Consensus         1 lt~~q~IDl~iL~G~dyn~pGV~GIGpktA~klIk~~g~ie~l~~~~~~~   50 (108)
T d1a77a1           1 ISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYY   50 (108)
T ss_dssp             CCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTTCHHHHHHHHCTTH
T ss_pred             CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf             98899999999958768877899917899999999838899998710246


No 9  
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=85.49  E-value=0.24  Score=26.38  Aligned_cols=32  Identities=22%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf             98658968999999999749999999970999
Q gi|254780303|r   24 LIRSDNISPATCRDMINYFGSAEQALEMIPEL   55 (77)
Q Consensus        24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l   55 (77)
                      |---++||+.+...|+++|||-++.+.|-++-
T Consensus        21 L~~I~gIg~~~a~~L~~~F~s~~~i~~A~~ee   52 (78)
T d2a1jb1          21 LTTVKSVNKTDSQTLLTTFGSLEQLIAASRED   52 (78)
T ss_dssp             HTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHH
T ss_pred             HCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf             63899759999999999939819988552788


No 10 
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=85.06  E-value=0.23  Score=26.48  Aligned_cols=37  Identities=5%  Similarity=0.082  Sum_probs=29.9

Q ss_pred             HHCCCCCHHHHHHHHHH-CCCHHHHHHHHHHH-HHHHCC
Q ss_conf             86589689999999997-49999999970999-996145
Q gi|254780303|r   25 IRSDNISPATCRDMINY-FGSAEQALEMIPEL-AQRGAV   61 (77)
Q Consensus        25 ~Rt~~VGp~Tf~~Ll~~-fGsA~aAL~aLP~l-a~rgG~   61 (77)
                      ..-|+|||.+..+|.++ |+|.+....+-|+- +.--|.
T Consensus         2 ~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi   40 (60)
T d2i1qa1           2 TDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGI   40 (60)
T ss_dssp             TTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTC
T ss_pred             CCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCC
T ss_conf             788898999999999836999999985999999877898


No 11 
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=81.20  E-value=0.41  Score=25.12  Aligned_cols=35  Identities=14%  Similarity=0.180  Sum_probs=27.5

Q ss_pred             HCCCCCHHHHHHHHHH-CCCHHHHHHHHHHH-HHHHC
Q ss_conf             6589689999999997-49999999970999-99614
Q gi|254780303|r   26 RSDNISPATCRDMINY-FGSAEQALEMIPEL-AQRGA   60 (77)
Q Consensus        26 Rt~~VGp~Tf~~Ll~~-fGsA~aAL~aLP~l-a~rgG   60 (77)
                      --|+|||.+..+|... |+|.+....+-|+- +.--|
T Consensus         5 ~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~G   41 (61)
T d1pzna1           5 DLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAG   41 (61)
T ss_dssp             CCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCC
T ss_conf             1799799999999994499999998599999977799


No 12 
>d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=74.82  E-value=0.77  Score=23.53  Aligned_cols=25  Identities=4%  Similarity=0.021  Sum_probs=20.9

Q ss_pred             CCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf             5896899999999974999999997
Q gi|254780303|r   27 SDNISPATCRDMINYFGSAEQALEM   51 (77)
Q Consensus        27 t~~VGp~Tf~~Ll~~fGsA~aAL~a   51 (77)
                      -++|||+|...||..||+-+..++.
T Consensus        22 I~GIGpktAlklikk~~~~~~~~~~   46 (120)
T d1b43a1          22 IKGIGLKKALEIVRHSKDPLAKFQK   46 (120)
T ss_dssp             STTCCHHHHHHHHHTCSSGGGGTGG
T ss_pred             CCCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf             8886779999999983799999886


No 13 
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=61.49  E-value=3.4  Score=19.89  Aligned_cols=28  Identities=18%  Similarity=0.457  Sum_probs=23.8

Q ss_pred             HHHHCCCCCHHHHHHHHHHCCCHHHHHH
Q ss_conf             9986589689999999997499999999
Q gi|254780303|r   23 RLIRSDNISPATCRDMINYFGSAEQALE   50 (77)
Q Consensus        23 RL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~   50 (77)
                      .|-..++||..|..+|+..||.++.+-.
T Consensus         3 eltkkegvgrktaerllrafgnpervkq   30 (55)
T d2csba3           3 ELTKKEGVGRKTAERLLRAFGNPERVKQ   30 (55)
T ss_dssp             HHHTSTTCCHHHHHHHHHHHSSHHHHHH
T ss_pred             HHHHHCCCCHHHHHHHHHHHCCHHHHHH
T ss_conf             1566405247689999998199899999


No 14 
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]}
Probab=55.09  E-value=3.9  Score=19.57  Aligned_cols=34  Identities=21%  Similarity=0.327  Sum_probs=25.3

Q ss_pred             HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             9999865896899999999974999999997099
Q gi|254780303|r   21 WLRLIRSDNISPATCRDMINYFGSAEQALEMIPE   54 (77)
Q Consensus        21 wLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~   54 (77)
                      ||--+--++||+.+...|.++|||-++-..+-.+
T Consensus       106 ~l~aLGI~~vG~~~Ak~La~~f~sl~~l~~as~e  139 (181)
T d1dgsa1         106 LLYALGLPGVGEVLARNLARRFGTMDRLLEASLE  139 (181)
T ss_dssp             HHHHTTCSSCCHHHHHHHHHTTSBHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999875434477899999876200255412789


No 15 
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]}
Probab=48.70  E-value=9.2  Score=17.44  Aligned_cols=37  Identities=8%  Similarity=0.186  Sum_probs=28.4

Q ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf             99999999999865896899999999974999999997
Q gi|254780303|r   14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM   51 (77)
Q Consensus        14 s~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~a   51 (77)
                      +.+||--+..|+.-.+|||.+-..+|..|+. +...++
T Consensus         1 d~eEr~~F~~Li~V~GIGpK~Al~iLs~~~~-~~l~~a   37 (71)
T d1bvsa2           1 DAENRDLFLALLSVSGVGPRLAMATLAVHDA-AALRQA   37 (71)
T ss_dssp             SHHHHHHHHHHHTSSSCCHHHHHHHHHHSCH-HHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCH-HHHHHH
T ss_conf             9789999999855488179999999984999-999999


No 16 
>d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]}
Probab=44.34  E-value=0.69  Score=23.80  Aligned_cols=27  Identities=26%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             CCCCCHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf             589689999999997499999999709
Q gi|254780303|r   27 SDNISPATCRDMINYFGSAEQALEMIP   53 (77)
Q Consensus        27 t~~VGp~Tf~~Ll~~fGsA~aAL~aLP   53 (77)
                      -++|||.|...|+..|||=+..++.+.
T Consensus        23 v~GiG~KtA~kll~~~gsle~i~~~~~   49 (116)
T d1cmwa1          23 VKGIGEKTARKLLEEWGSLEALLKNLD   49 (116)
T ss_dssp             CCCSTTCTTTTTGGGGGTTCSSSSSCC
T ss_pred             CCCCCCHHHHHHHHHCCHHHHHHHHHH
T ss_conf             043373027789873221788998776


No 17 
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]}
Probab=43.63  E-value=11  Score=16.98  Aligned_cols=38  Identities=5%  Similarity=0.167  Sum_probs=29.6

Q ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH
Q ss_conf             999999999998658968999999999749999999970
Q gi|254780303|r   14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMI   52 (77)
Q Consensus        14 s~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aL   52 (77)
                      +.+||--+..|+--.+|||.+--.+++.|. ++...+++
T Consensus         2 d~~Er~lF~~Li~V~GIGpk~Al~iLs~~~-~~~l~~aI   39 (73)
T d1ixra1           2 DEENLALFELLLSVSGVGPKVALALLSALP-PRLLARAL   39 (73)
T ss_dssp             SHHHHHHHHHHHSSSCCCHHHHHHHHHHSC-HHHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-HHHHHHHH
T ss_conf             889999999986558807999999998736-88999999


No 18 
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]}
Probab=30.26  E-value=18  Score=15.73  Aligned_cols=37  Identities=14%  Similarity=0.347  Sum_probs=28.5

Q ss_pred             CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHH
Q ss_conf             99999999999865896899999999974999999997
Q gi|254780303|r   14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM   51 (77)
Q Consensus        14 s~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~a   51 (77)
                      +.+||--+..|+--.+|||.+-..+|..|+ ++...++
T Consensus         1 d~~Er~~F~~Li~V~GIGpK~Al~iLs~~~-~~~l~~a   37 (78)
T d1cuka2           1 NKQERTLFKELIKTNGVGPKLALAILSGMS-AQQFVNA   37 (78)
T ss_dssp             SHHHHHHHHHHHHSSSCCHHHHHHHHHHSC-HHHHHHH
T ss_pred             CHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-HHHHHHH
T ss_conf             988999999987668801999999998489-9999999


Done!