Query gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 77 No_of_seqs 102 out of 154 Neff 3.5 Searched_HMMs 13730 Date Wed Jun 1 02:09:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780303.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2bgwa1 a.60.2.5 (A:160-229) D 95.0 0.017 1.2E-06 32.9 4.8 51 11-61 2-53 (70) 2 d1kfta_ a.60.2.3 (A:) Excinucl 92.9 0.021 1.5E-06 32.4 1.9 33 24-56 4-36 (56) 3 d1rxwa1 a.60.7.1 (A:220-324) F 92.5 0.12 8.8E-06 28.1 5.4 41 13-53 1-47 (105) 4 d1xo1a1 a.60.7.1 (A:186-290) T 91.7 0.054 3.9E-06 30.1 2.8 28 27-54 24-51 (105) 5 d2a1ja1 a.60.2.5 (A:837-898) D 91.6 0.073 5.3E-06 29.3 3.4 30 24-53 5-34 (62) 6 d1ul1x1 a.60.7.1 (X:218-357) F 90.9 0.072 5.3E-06 29.4 2.8 42 13-54 1-48 (140) 7 d1x2ia1 a.60.2.5 (A:2-69) ATP- 90.8 0.21 1.5E-05 26.7 5.1 42 13-55 2-43 (68) 8 d1a77a1 a.60.7.1 (A:209-316) F 87.4 0.18 1.3E-05 27.1 2.8 43 13-55 1-50 (108) 9 d2a1jb1 a.60.2.5 (B:219-296) D 85.5 0.24 1.8E-05 26.4 2.6 32 24-55 21-52 (78) 10 d2i1qa1 a.60.4.1 (A:5-64) DNA 85.1 0.23 1.7E-05 26.5 2.4 37 25-61 2-40 (60) 11 d1pzna1 a.60.4.1 (A:35-95) DNA 81.2 0.41 3E-05 25.1 2.3 35 26-60 5-41 (61) 12 d1b43a1 a.60.7.1 (A:220-339) F 74.8 0.77 5.6E-05 23.5 2.2 25 27-51 22-46 (120) 13 d2csba3 a.60.2.4 (A:410-464) T 61.5 3.4 0.00025 19.9 3.2 28 23-50 3-30 (55) 14 d1dgsa1 a.60.2.2 (A:401-581) N 55.1 3.9 0.00028 19.6 2.6 34 21-54 106-139 (181) 15 d1bvsa2 a.60.2.1 (A:64-134) DN 48.7 9.2 0.00067 17.4 5.7 37 14-51 1-37 (71) 16 d1cmwa1 a.60.7.1 (A:174-289) 5 44.3 0.69 5.1E-05 23.8 -2.6 27 27-53 23-49 (116) 17 d1ixra1 a.60.2.1 (A:63-135) DN 43.6 11 0.00081 17.0 5.5 38 14-52 2-39 (73) 18 d1cuka2 a.60.2.1 (A:65-142) DN 30.3 18 0.0013 15.7 5.8 37 14-51 1-37 (78) No 1 >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Probab=94.96 E-value=0.017 Score=32.91 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=38.9 Q ss_pred CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH-HHHHHCC Q ss_conf 78899999999999865896899999999974999999997099-9996145 Q gi|254780303|r 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPE-LAQRGAV 61 (77) Q Consensus 11 ~~ls~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~-la~rgG~ 61 (77) +.+++-+.+.+.-|---|+|||++-.+|+++|||..+.+.|-++ |+.=.|. T Consensus 2 ~~~~~~~~~~~~~L~~IpgIG~~~a~~L~~~F~s~~~l~~As~eeL~~v~GI 53 (70) T d2bgwa1 2 PRLSDVREWQLYILQSFPGIGRRTAERILERFGSLERFFTASKAEISKVEGI 53 (70) T ss_dssp CCCCHHHHHHHHHHHTSTTCCHHHHHHHHHHHSSHHHHTTCCHHHHHHSTTC T ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCHHHHHCCCCC T ss_conf 8858899989999808999579999999998298899988699999757998 No 2 >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Probab=92.86 E-value=0.021 Score=32.43 Aligned_cols=33 Identities=15% Similarity=0.251 Sum_probs=27.9 Q ss_pred HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH Q ss_conf 986589689999999997499999999709999 Q gi|254780303|r 24 LIRSDNISPATCRDMINYFGSAEQALEMIPELA 56 (77) Q Consensus 24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~la 56 (77) |-.-|+|||.+...|+++|||-++...|-++=. T Consensus 4 L~~I~gVG~~~a~~L~~~F~s~~~i~~As~eeL 36 (56) T d1kfta_ 4 LETIEGVGPKRRQMLLKYMGGLQGLRNASVEEI 36 (56) T ss_dssp GGGCTTCSSSHHHHHHHHHSCHHHHHHCCHHHH T ss_pred CCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHH T ss_conf 535898009999999999399999998649999 No 3 >d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=92.49 E-value=0.12 Score=28.10 Aligned_cols=41 Identities=22% Similarity=0.325 Sum_probs=33.3 Q ss_pred CCHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 899999999999865------89689999999997499999999709 Q gi|254780303|r 13 LTDDQKISWLRLIRS------DNISPATCRDMINYFGSAEQALEMIP 53 (77) Q Consensus 13 ls~~erlawLRL~Rt------~~VGp~Tf~~Ll~~fGsA~aAL~aLP 53 (77) ||.++-++.+=|.=| ++|||.|...||+.|||-+..++.+. T Consensus 1 lt~eq~iD~~~L~GsDn~pGV~GIG~ktA~kli~~~gsle~i~~~~~ 47 (105) T d1rxwa1 1 LTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALK 47 (105) T ss_dssp CCHHHHHHHHHHHCBTTBCCCTTCCHHHHHHHHHHHSSHHHHHHHHT T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHH T ss_conf 98999999999958878889999378999999999399899999887 No 4 >d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Probab=91.70 E-value=0.054 Score=30.09 Aligned_cols=28 Identities=18% Similarity=0.391 Sum_probs=25.1 Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 5896899999999974999999997099 Q gi|254780303|r 27 SDNISPATCRDMINYFGSAEQALEMIPE 54 (77) Q Consensus 27 t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~ 54 (77) -++|||.|...||+.|||-+..+++++. T Consensus 24 V~GiG~KtA~kli~~~gsle~i~~~~~~ 51 (105) T d1xo1a1 24 VEGIGAKRGYNIIREFGNVLDIIDQLPL 51 (105) T ss_dssp CTTCCHHHHHHHHHHHCSHHHHHHHCSC T ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 5884789999999870265899986887 No 5 >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Probab=91.58 E-value=0.073 Score=29.34 Aligned_cols=30 Identities=10% Similarity=0.361 Sum_probs=25.9 Q ss_pred HHHCCCCCHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 986589689999999997499999999709 Q gi|254780303|r 24 LIRSDNISPATCRDMINYFGSAEQALEMIP 53 (77) Q Consensus 24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP 53 (77) |..-|+||+.+...|+++|||-++...|-- T Consensus 5 L~~iPGIg~~~~~~Ll~~f~Si~~l~~As~ 34 (62) T d2a1ja1 5 LLKMPGVNAKNCRSLMHHVKNIAELAALSQ 34 (62) T ss_dssp HHTSTTCCHHHHHHHHHHCSSHHHHHTCCH T ss_pred HHCCCCCCHHHHHHHHHHHCCHHHHHHCCH T ss_conf 766999999999999998524999986999 No 6 >d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Probab=90.93 E-value=0.072 Score=29.37 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=33.4 Q ss_pred CCHHHHHHHHHHHHC------CCCCHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 899999999999865------896899999999974999999997099 Q gi|254780303|r 13 LTDDQKISWLRLIRS------DNISPATCRDMINYFGSAEQALEMIPE 54 (77) Q Consensus 13 ls~~erlawLRL~Rt------~~VGp~Tf~~Ll~~fGsA~aAL~aLP~ 54 (77) ||.++-++..=|+=| ++|||.|...||..||+-+..++.+.. T Consensus 1 l~~~q~id~~~L~GsD~~pgv~gIG~ktA~kli~~~~~le~i~~~~~~ 48 (140) T d1ul1x1 1 LNQEQFVDLCILLGSDYCESIRGIGPKRAVDLIQKHKSIEEIVRRLDP 48 (140) T ss_dssp CCHHHHHHHHHHHHCSSSCCCTTCCHHHHHHHHHHSSSHHHHHTTCCC T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 988999999998287789899982399999999993999999999998 No 7 >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Probab=90.81 E-value=0.21 Score=26.73 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=31.0 Q ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 8999999999998658968999999999749999999970999 Q gi|254780303|r 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55 (77) Q Consensus 13 ls~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l 55 (77) |+-.|+.-. -|---|+|||.+...|+++|||-++.+.|-.+- T Consensus 2 ~~~~~~~~~-~L~~I~gIG~~~a~~L~~~f~s~~~i~~As~ee 43 (68) T d1x2ia1 2 LTLAERQRL-IVEGLPHVSATLARRLLKHFGSVERVFTASVAE 43 (68) T ss_dssp CCHHHHHHH-HHTTSTTCCHHHHHHHHHHHCSHHHHHHCCHHH T ss_pred CCHHHHHHH-HHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 988999999-981899968999999999749999998858999 No 8 >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Probab=87.43 E-value=0.18 Score=27.14 Aligned_cols=43 Identities=7% Similarity=0.012 Sum_probs=32.3 Q ss_pred CCHHHHHHHHHHHH-------CCCCCHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 89999999999986-------58968999999999749999999970999 Q gi|254780303|r 13 LTDDQKISWLRLIR-------SDNISPATCRDMINYFGSAEQALEMIPEL 55 (77) Q Consensus 13 ls~~erlawLRL~R-------t~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l 55 (77) ||.+|-++..=|.= -++|||.|...||..|||-+..++..... T Consensus 1 lt~~q~IDl~iL~G~dyn~pGV~GIGpktA~klIk~~g~ie~l~~~~~~~ 50 (108) T d1a77a1 1 ISLDDLIDIAIFMGTDYNPGGVKGIGFKRAYELVRSGVAKDVLKKEVEYY 50 (108) T ss_dssp CCHHHHHHHHHHHCCTTSTTCSTTCCHHHHHHHHHTTCHHHHHHHHCTTH T ss_pred CCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH T ss_conf 98899999999958768877899917899999999838899998710246 No 9 >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=85.49 E-value=0.24 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=27.2 Q ss_pred HHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH Q ss_conf 98658968999999999749999999970999 Q gi|254780303|r 24 LIRSDNISPATCRDMINYFGSAEQALEMIPEL 55 (77) Q Consensus 24 L~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~l 55 (77) |---++||+.+...|+++|||-++.+.|-++- T Consensus 21 L~~I~gIg~~~a~~L~~~F~s~~~i~~A~~ee 52 (78) T d2a1jb1 21 LTTVKSVNKTDSQTLLTTFGSLEQLIAASRED 52 (78) T ss_dssp HTTSTTCCHHHHHHHHHHHSSHHHHHSCCHHH T ss_pred HCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHH T ss_conf 63899759999999999939819988552788 No 10 >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Probab=85.06 E-value=0.23 Score=26.48 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=29.9 Q ss_pred HHCCCCCHHHHHHHHHH-CCCHHHHHHHHHHH-HHHHCC Q ss_conf 86589689999999997-49999999970999-996145 Q gi|254780303|r 25 IRSDNISPATCRDMINY-FGSAEQALEMIPEL-AQRGAV 61 (77) Q Consensus 25 ~Rt~~VGp~Tf~~Ll~~-fGsA~aAL~aLP~l-a~rgG~ 61 (77) ..-|+|||.+..+|.++ |+|.+....+-|+- +.--|. T Consensus 2 ~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi 40 (60) T d2i1qa1 2 TDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGI 40 (60) T ss_dssp TTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTC T ss_pred CCCCCCCHHHHHHHHHCCCCCHHHHHHCCHHHHHHCCCC T ss_conf 788898999999999836999999985999999877898 No 11 >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=81.20 E-value=0.41 Score=25.12 Aligned_cols=35 Identities=14% Similarity=0.180 Sum_probs=27.5 Q ss_pred HCCCCCHHHHHHHHHH-CCCHHHHHHHHHHH-HHHHC Q ss_conf 6589689999999997-49999999970999-99614 Q gi|254780303|r 26 RSDNISPATCRDMINY-FGSAEQALEMIPEL-AQRGA 60 (77) Q Consensus 26 Rt~~VGp~Tf~~Ll~~-fGsA~aAL~aLP~l-a~rgG 60 (77) --|+|||.+..+|... |+|.+....+-|+- +.--| T Consensus 5 ~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~G 41 (61) T d1pzna1 5 DLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAG 41 (61) T ss_dssp CCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHC T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCC T ss_conf 1799799999999994499999998599999977799 No 12 >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Probab=74.82 E-value=0.77 Score=23.53 Aligned_cols=25 Identities=4% Similarity=0.021 Sum_probs=20.9 Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHHH Q ss_conf 5896899999999974999999997 Q gi|254780303|r 27 SDNISPATCRDMINYFGSAEQALEM 51 (77) Q Consensus 27 t~~VGp~Tf~~Ll~~fGsA~aAL~a 51 (77) -++|||+|...||..||+-+..++. T Consensus 22 I~GIGpktAlklikk~~~~~~~~~~ 46 (120) T d1b43a1 22 IKGIGLKKALEIVRHSKDPLAKFQK 46 (120) T ss_dssp STTCCHHHHHHHHHTCSSGGGGTGG T ss_pred CCCCCHHHHHHHHHHHCCHHHHHHH T ss_conf 8886779999999983799999886 No 13 >d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]} Probab=61.49 E-value=3.4 Score=19.89 Aligned_cols=28 Identities=18% Similarity=0.457 Sum_probs=23.8 Q ss_pred HHHHCCCCCHHHHHHHHHHCCCHHHHHH Q ss_conf 9986589689999999997499999999 Q gi|254780303|r 23 RLIRSDNISPATCRDMINYFGSAEQALE 50 (77) Q Consensus 23 RL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~ 50 (77) .|-..++||..|..+|+..||.++.+-. T Consensus 3 eltkkegvgrktaerllrafgnpervkq 30 (55) T d2csba3 3 ELTKKEGVGRKTAERLLRAFGNPERVKQ 30 (55) T ss_dssp HHHTSTTCCHHHHHHHHHHHSSHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHCCHHHHHH T ss_conf 1566405247689999998199899999 No 14 >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Probab=55.09 E-value=3.9 Score=19.57 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=25.3 Q ss_pred HHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHH Q ss_conf 9999865896899999999974999999997099 Q gi|254780303|r 21 WLRLIRSDNISPATCRDMINYFGSAEQALEMIPE 54 (77) Q Consensus 21 wLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aLP~ 54 (77) ||--+--++||+.+...|.++|||-++-..+-.+ T Consensus 106 ~l~aLGI~~vG~~~Ak~La~~f~sl~~l~~as~e 139 (181) T d1dgsa1 106 LLYALGLPGVGEVLARNLARRFGTMDRLLEASLE 139 (181) T ss_dssp HHHHTTCSSCCHHHHHHHHHTTSBHHHHTTCCHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9999875434477899999876200255412789 No 15 >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Probab=48.70 E-value=9.2 Score=17.44 Aligned_cols=37 Identities=8% Similarity=0.186 Sum_probs=28.4 Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHH Q ss_conf 99999999999865896899999999974999999997 Q gi|254780303|r 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51 (77) Q Consensus 14 s~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~a 51 (77) +.+||--+..|+.-.+|||.+-..+|..|+. +...++ T Consensus 1 d~eEr~~F~~Li~V~GIGpK~Al~iLs~~~~-~~l~~a 37 (71) T d1bvsa2 1 DAENRDLFLALLSVSGVGPRLAMATLAVHDA-AALRQA 37 (71) T ss_dssp SHHHHHHHHHHHTSSSCCHHHHHHHHHHSCH-HHHHHH T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCCH-HHHHHH T ss_conf 9789999999855488179999999984999-999999 No 16 >d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Probab=44.34 E-value=0.69 Score=23.80 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=22.7 Q ss_pred CCCCCHHHHHHHHHHCCCHHHHHHHHH Q ss_conf 589689999999997499999999709 Q gi|254780303|r 27 SDNISPATCRDMINYFGSAEQALEMIP 53 (77) Q Consensus 27 t~~VGp~Tf~~Ll~~fGsA~aAL~aLP 53 (77) -++|||.|...|+..|||=+..++.+. T Consensus 23 v~GiG~KtA~kll~~~gsle~i~~~~~ 49 (116) T d1cmwa1 23 VKGIGEKTARKLLEEWGSLEALLKNLD 49 (116) T ss_dssp CCCSTTCTTTTTGGGGGTTCSSSSSCC T ss_pred CCCCCCHHHHHHHHHCCHHHHHHHHHH T ss_conf 043373027789873221788998776 No 17 >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Probab=43.63 E-value=11 Score=16.98 Aligned_cols=38 Identities=5% Similarity=0.167 Sum_probs=29.6 Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHH Q ss_conf 999999999998658968999999999749999999970 Q gi|254780303|r 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMI 52 (77) Q Consensus 14 s~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~aL 52 (77) +.+||--+..|+--.+|||.+--.+++.|. ++...+++ T Consensus 2 d~~Er~lF~~Li~V~GIGpk~Al~iLs~~~-~~~l~~aI 39 (73) T d1ixra1 2 DEENLALFELLLSVSGVGPKVALALLSALP-PRLLARAL 39 (73) T ss_dssp SHHHHHHHHHHHSSSCCCHHHHHHHHHHSC-HHHHHHHH T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-HHHHHHHH T ss_conf 889999999986558807999999998736-88999999 No 18 >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Probab=30.26 E-value=18 Score=15.73 Aligned_cols=37 Identities=14% Similarity=0.347 Sum_probs=28.5 Q ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHH Q ss_conf 99999999999865896899999999974999999997 Q gi|254780303|r 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51 (77) Q Consensus 14 s~~erlawLRL~Rt~~VGp~Tf~~Ll~~fGsA~aAL~a 51 (77) +.+||--+..|+--.+|||.+-..+|..|+ ++...++ T Consensus 1 d~~Er~~F~~Li~V~GIGpK~Al~iLs~~~-~~~l~~a 37 (78) T d1cuka2 1 NKQERTLFKELIKTNGVGPKLALAILSGMS-AQQFVNA 37 (78) T ss_dssp SHHHHHHHHHHHHSSSCCHHHHHHHHHHSC-HHHHHHH T ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHCC-HHHHHHH T ss_conf 988999999987668801999999998489-9999999 Done!