BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
(77 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus
str. psy62]
gi|254039980|gb|ACT56776.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 77
Score = 161 bits (408), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA
Sbjct: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
Query: 61 VYAGKRAFVQKNQQKKS 77
VYAGKRAFVQKNQQKKS
Sbjct: 61 VYAGKRAFVQKNQQKKS 77
>gi|315122272|ref|YP_004062761.1| hypothetical protein CKC_02620 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495674|gb|ADR52273.1| hypothetical protein CKC_02620 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 298
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 62/76 (81%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M K+NP K GV LTDDQKISWLRLIRSDNI PAT RDMINYFGSAEQALEMIPEL+QRG
Sbjct: 1 MTKINPQKRGVYLTDDQKISWLRLIRSDNIGPATFRDMINYFGSAEQALEMIPELSQRGD 60
Query: 61 VYAGKRAFVQKNQQKK 76
+ R + +++ +K+
Sbjct: 61 INKKIRIYSKESAEKE 76
>gi|222148310|ref|YP_002549267.1| DNA protecting protein DprA [Agrobacterium vitis S4]
gi|221735298|gb|ACM36261.1| DNA protecting protein DprA [Agrobacterium vitis S4]
Length = 383
Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 46/53 (86%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ G++LT+ Q+ +WLRLIRSDN+ PAT RD+IN FG+AE+AL+M+PEL+QRG
Sbjct: 8 RSGIALTEKQRTAWLRLIRSDNVGPATFRDLINNFGTAERALDMLPELSQRGG 60
>gi|227821656|ref|YP_002825626.1| DNA processing chain A [Sinorhizobium fredii NGR234]
gi|227340655|gb|ACP24873.1| DNA processing chain A [Sinorhizobium fredii NGR234]
Length = 386
Score = 80.1 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/53 (62%), Positives = 45/53 (84%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ G +LT+ Q+I+WLRLIRSDN+ PAT RD++N+FGSAE ALE +PEL++RG
Sbjct: 8 RNGTALTERQRIAWLRLIRSDNVGPATFRDLVNHFGSAEAALEALPELSRRGG 60
>gi|150396156|ref|YP_001326623.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
gi|150027671|gb|ABR59788.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
Length = 383
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/58 (62%), Positives = 48/58 (82%), Gaps = 3/58 (5%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
V+LT+ QKI+WLRLIRSDN+ PAT RD+IN+FG+AE ALE +PEL++RG +R+F
Sbjct: 11 VALTERQKIAWLRLIRSDNVGPATFRDLINHFGTAEAALEALPELSRRG---GAERSF 65
>gi|163759336|ref|ZP_02166422.1| putative smf protein [Hoeflea phototrophica DFL-43]
gi|162283740|gb|EDQ34025.1| putative smf protein [Hoeflea phototrophica DFL-43]
Length = 383
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 44/51 (86%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
GV LTD Q++SWLRLIRSDN+ PAT RD+IN+FGSA+ A+E +PEL++RG
Sbjct: 10 GVVLTDRQRLSWLRLIRSDNVGPATFRDLINHFGSADAAIEQLPELSRRGG 60
>gi|307301126|ref|ZP_07580895.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
gi|306904081|gb|EFN34667.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
Length = 383
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 47/59 (79%), Gaps = 4/59 (6%)
Query: 6 PLKG----GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
PL G G +L++ QKI+WLRLIRSDN+ PAT RD+I++FG+AE ALE +PEL++RG
Sbjct: 2 PLGGARRTGTALSERQKIAWLRLIRSDNVGPATFRDLISHFGNAEAALEALPELSRRGG 60
>gi|15965054|ref|NP_385407.1| hypothetical protein SMc01363 [Sinorhizobium meliloti 1021]
gi|15074233|emb|CAC45880.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 383
Score = 76.3 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/59 (59%), Positives = 47/59 (79%), Gaps = 4/59 (6%)
Query: 6 PLKG----GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
PL G G +L++ QKI+WLRLIRSDN+ PAT RD+I++FG+AE ALE +PEL++RG
Sbjct: 2 PLGGARRTGTALSERQKIAWLRLIRSDNVGPATFRDLISHFGNAEAALEALPELSRRGG 60
>gi|307317859|ref|ZP_07597297.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
gi|306896621|gb|EFN27369.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
Length = 383
Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/53 (60%), Positives = 45/53 (84%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ G +L++ QKI+WLRLIRSDN+ PAT RD+I++FG+AE ALE +PEL++RG
Sbjct: 8 RTGTALSERQKIAWLRLIRSDNVGPATFRDLISHFGNAEAALEALPELSRRGG 60
>gi|222085614|ref|YP_002544144.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
gi|221723062|gb|ACM26218.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
Length = 383
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/53 (56%), Positives = 44/53 (83%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ G++LT+ Q+I+WLRLIRSDN+ P+T RD+I ++GSAE AL +P+L+QRG
Sbjct: 8 RTGIALTEKQRIAWLRLIRSDNVGPSTFRDLIQHYGSAEAALAALPDLSQRGG 60
>gi|325292667|ref|YP_004278531.1| DNA processing chain A [Agrobacterium sp. H13-3]
gi|325060520|gb|ADY64211.1| DNA processing chain A [Agrobacterium sp. H13-3]
Length = 379
Score = 71.6 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 47/69 (68%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ G+ L+ Q+++WLRLIRSDNI P T R++IN+FGSAE+AL +P+L++RG R
Sbjct: 8 RQGIELSARQRVAWLRLIRSDNIGPVTFRELINHFGSAEKALSALPDLSRRGGSLRSPRI 67
Query: 68 FVQKNQQKK 76
Q + +
Sbjct: 68 ATQAEAEDE 76
>gi|209884919|ref|YP_002288776.1| SMF protein [Oligotropha carboxidovorans OM5]
gi|209873115|gb|ACI92911.1| SMF protein [Oligotropha carboxidovorans OM5]
Length = 377
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/60 (53%), Positives = 43/60 (71%), Gaps = 2/60 (3%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M++ P+ LTD Q+I WLRLIRSDN+ P T R ++N++GSA ALE +PELA+RG
Sbjct: 1 MERQTPVP--TRLTDAQRIDWLRLIRSDNVGPRTFRSLVNHYGSARAALERLPELARRGG 58
>gi|15888630|ref|NP_354311.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
gi|15156358|gb|AAK87096.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
Length = 380
Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/53 (54%), Positives = 43/53 (81%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ G+ L+ Q+++WLRLIRSDNI P T R++IN+FGSAE+AL+ +PEL++ G
Sbjct: 8 RQGIELSARQRVAWLRLIRSDNIGPVTFRELINHFGSAEKALDALPELSKHGG 60
>gi|110633709|ref|YP_673917.1| DNA protecting protein DprA [Mesorhizobium sp. BNC1]
gi|110284693|gb|ABG62752.1| DNA protecting protein DprA [Chelativorans sp. BNC1]
Length = 378
Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 32/55 (58%), Positives = 42/55 (76%)
Query: 6 PLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
P GG L D Q+ +WLRLIR++N+ PAT R +IN FGSAE+AL+ +PELA+RG
Sbjct: 5 PPAGGPKLDDRQRQAWLRLIRTENVGPATFRMLINRFGSAEEALKALPELARRGG 59
>gi|114707187|ref|ZP_01440085.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
gi|114537383|gb|EAU40509.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
Length = 377
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
K GV+ T D ++SWLRL RS+N+ P T R +IN FG AE ALE +PELA+RG
Sbjct: 8 KKGVAFTYDMQVSWLRLYRSENVGPVTFRQLINRFGGAEAALEALPELAERGG 60
>gi|319783706|ref|YP_004143182.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169594|gb|ADV13132.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 379
Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 41/57 (71%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M+ G L+D Q++SWLRLIR+ N+ PA+ RD+IN FGSAE ALE++PEL G
Sbjct: 1 MSEPTAGPRLSDRQRLSWLRLIRTQNVGPASFRDLINRFGSAEAALEILPELMISGG 57
>gi|90423747|ref|YP_532117.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
gi|90105761|gb|ABD87798.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
Length = 372
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L+D Q++ WLRLIRSDN+ P T R ++N+FGSA ALE +P+LA+RG
Sbjct: 10 LSDAQRLDWLRLIRSDNVGPRTFRSLVNHFGSARAALERLPDLARRGG 57
>gi|153010990|ref|YP_001372204.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
gi|151562878|gb|ABS16375.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
Length = 388
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI P T RD+I + GSA A+EM+P+L RG
Sbjct: 1 MKESANSKTGIRLSDRQRLNWLRLIRTDNIGPVTFRDLILFCGSASSAIEMLPDLNIRGG 60
>gi|115525378|ref|YP_782289.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisA53]
gi|115519325|gb|ABJ07309.1| DNA protecting protein DprA [Rhodopseudomonas palustris BisA53]
Length = 372
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M+ + +LTD Q++ WLRLIRSDN+ P T R ++N+FGSA AL+ +P+LA+RG
Sbjct: 1 MDNDRQSTTLTDAQRLDWLRLIRSDNVGPRTFRSLVNHFGSARAALDRLPDLARRGG 57
>gi|254501021|ref|ZP_05113172.1| DNA protecting protein DprA, putative [Labrenzia alexandrii
DFL-11]
gi|222437092|gb|EEE43771.1| DNA protecting protein DprA, putative [Labrenzia alexandrii
DFL-11]
Length = 378
Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/58 (48%), Positives = 48/58 (82%), Gaps = 4/58 (6%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
+ L++ Q+++WLRLIRS+N+ P T RD++N+ GSAE+AL+++PEL++RG GK+++
Sbjct: 10 LRLSEAQRLAWLRLIRSENVGPTTFRDLLNHTGSAEKALQLLPELSRRG----GKKSY 63
>gi|92117808|ref|YP_577537.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
gi|91800702|gb|ABE63077.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
Length = 372
Score = 67.0 bits (162), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
LTD Q+I WLRLIRS+N+ P T R ++N+FGSA +AL +P+LA+RG
Sbjct: 10 LTDSQRIDWLRLIRSENVGPRTFRSLVNHFGSAGEALARLPDLARRGG 57
>gi|260459178|ref|ZP_05807433.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
gi|259034732|gb|EEW35988.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G L+D Q++SWLRLIR+ N+ PA+ RD+IN FGSAE ALE++PEL G
Sbjct: 13 AGPRLSDRQRLSWLRLIRTQNVGPASFRDLINRFGSAEVALEVLPELMISGG 64
>gi|13470875|ref|NP_102444.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
gi|14021618|dbj|BAB48230.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
Length = 377
Score = 67.0 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 41/57 (71%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M+ G L+D Q+++WLRLIR+ N+ PA+ RD+IN FGSAE ALE++PEL G
Sbjct: 1 MSEPAAGPRLSDRQRLNWLRLIRTQNVGPASFRDLINRFGSAEVALEILPELMVSGG 57
>gi|254474217|ref|ZP_05087608.1| DNA processing chain A [Pseudovibrio sp. JE062]
gi|211956747|gb|EEA91956.1| DNA processing chain A [Pseudovibrio sp. JE062]
Length = 397
Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 49/63 (77%), Gaps = 4/63 (6%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
L+D Q+++WLRLIRS+N+ P T R+++N+FGSA+ AL+ +PEL++RG GK+++ +
Sbjct: 12 LSDTQRLAWLRLIRSENVGPRTFRELLNHFGSAQAALDALPELSRRG----GKKSYRLFS 67
Query: 73 QQK 75
Q K
Sbjct: 68 QDK 70
>gi|254699839|ref|ZP_05161667.1| SMF protein [Brucella suis bv. 5 str. 513]
gi|261750312|ref|ZP_05994021.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
gi|261740065|gb|EEY27991.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|225686388|ref|YP_002734360.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|256262471|ref|ZP_05465003.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
gi|225642493|gb|ACO02406.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|263092207|gb|EEZ16504.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|326410760|gb|ADZ67824.1| DNA protecting protein DprA [Brucella melitensis M28]
gi|326554052|gb|ADZ88691.1| DNA protecting protein DprA [Brucella melitensis M5-90]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|254720411|ref|ZP_05182222.1| SMF protein [Brucella sp. 83/13]
gi|265985430|ref|ZP_06098165.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306839012|ref|ZP_07471833.1| DNA protecting protein DprA [Brucella sp. NF 2653]
gi|264664022|gb|EEZ34283.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306405918|gb|EFM62176.1| DNA protecting protein DprA [Brucella sp. NF 2653]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|17989012|ref|NP_541645.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|62317541|ref|YP_223394.1| DNA processing protein DprA [Brucella abortus bv. 1 str. 9-941]
gi|83269522|ref|YP_418813.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189022796|ref|YP_001932537.1| SMF protein [Brucella abortus S19]
gi|225629094|ref|ZP_03787127.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237817089|ref|ZP_04596081.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|254698822|ref|ZP_05160650.1| SMF protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254705901|ref|ZP_05167729.1| SMF protein [Brucella pinnipedialis M163/99/10]
gi|254711129|ref|ZP_05172940.1| SMF protein [Brucella pinnipedialis B2/94]
gi|254712412|ref|ZP_05174223.1| SMF protein [Brucella ceti M644/93/1]
gi|254715484|ref|ZP_05177295.1| SMF protein [Brucella ceti M13/05/1]
gi|254732269|ref|ZP_05190847.1| SMF protein [Brucella abortus bv. 4 str. 292]
gi|256015379|ref|YP_003105388.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|256029510|ref|ZP_05443124.1| SMF protein [Brucella pinnipedialis M292/94/1]
gi|256043499|ref|ZP_05446426.1| SMF protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256059205|ref|ZP_05449411.1| SMF protein [Brucella neotomae 5K33]
gi|256157705|ref|ZP_05455623.1| SMF protein [Brucella ceti M490/95/1]
gi|256253323|ref|ZP_05458859.1| SMF protein [Brucella ceti B1/94]
gi|256256223|ref|ZP_05461759.1| SMF protein [Brucella abortus bv. 9 str. C68]
gi|260167399|ref|ZP_05754210.1| DNA processing protein DprA, putative [Brucella sp. F5/99]
gi|260544777|ref|ZP_05820598.1| SMF protein [Brucella abortus NCTC 8038]
gi|260564694|ref|ZP_05835179.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260760064|ref|ZP_05872412.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260763303|ref|ZP_05875635.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260882451|ref|ZP_05894065.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|261217219|ref|ZP_05931500.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261220439|ref|ZP_05934720.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|261313331|ref|ZP_05952528.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261318720|ref|ZP_05957917.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261320090|ref|ZP_05959287.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261323154|ref|ZP_05962351.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261756809|ref|ZP_06000518.1| SMF protein [Brucella sp. F5/99]
gi|265986518|ref|ZP_06099075.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|265989917|ref|ZP_06102474.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str.
Rev.1]
gi|265996210|ref|ZP_06108767.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|297249580|ref|ZP_06933281.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
gi|17984851|gb|AAL53909.1| smf protein [Brucella melitensis bv. 1 str. 16M]
gi|62197734|gb|AAX76033.1| hypothetical DprA, DNA processing protein [Brucella abortus bv. 1
str. 9-941]
gi|82939796|emb|CAJ12804.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189021370|gb|ACD74091.1| SMF protein [Brucella abortus S19]
gi|225615590|gb|EEH12639.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237787902|gb|EEP62118.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|255998039|gb|ACU49726.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|260098048|gb|EEW81922.1| SMF protein [Brucella abortus NCTC 8038]
gi|260152337|gb|EEW87430.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260670382|gb|EEX57322.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260673724|gb|EEX60545.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260871979|gb|EEX79048.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|260919023|gb|EEX85676.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|260922308|gb|EEX88876.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261292780|gb|EEX96276.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261297943|gb|EEY01440.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261299134|gb|EEY02631.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261302357|gb|EEY05854.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261736793|gb|EEY24789.1| SMF protein [Brucella sp. F5/99]
gi|262550507|gb|EEZ06668.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|263000586|gb|EEZ13276.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str.
Rev.1]
gi|264658715|gb|EEZ28976.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|297173449|gb|EFH32813.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|256111481|ref|ZP_05452495.1| SMF protein [Brucella melitensis bv. 3 str. Ether]
gi|265992978|ref|ZP_06105535.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str.
Ether]
gi|262763848|gb|EEZ09880.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str.
Ether]
Length = 388
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|306845936|ref|ZP_07478503.1| DNA protecting protein DprA [Brucella sp. BO1]
gi|306273571|gb|EFM55416.1| DNA protecting protein DprA [Brucella sp. BO1]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|294853600|ref|ZP_06794272.1| DNA processing protein [Brucella sp. NVSL 07-0026]
gi|294819255|gb|EFG36255.1| DNA processing protein [Brucella sp. NVSL 07-0026]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|254695655|ref|ZP_05157483.1| SMF protein [Brucella abortus bv. 3 str. Tulya]
gi|261216055|ref|ZP_05930336.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
gi|260917662|gb|EEX84523.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
Length = 393
Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|148558431|ref|YP_001257589.1| SMF protein [Brucella ovis ATCC 25840]
gi|148369716|gb|ABQ62588.1| SMF protein [Brucella ovis ATCC 25840]
Length = 393
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/60 (51%), Positives = 42/60 (70%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|307946437|ref|ZP_07661772.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
gi|307770101|gb|EFO29327.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
Length = 378
Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 41/56 (73%), Gaps = 4/56 (7%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
L + Q+++WLRLIRS+N+ P T RD+IN+FGSA+ AL +PE++ RG GKR
Sbjct: 12 LPEAQRLAWLRLIRSENVGPHTFRDLINHFGSADAALAALPEMSARG----GKRTL 63
>gi|319408534|emb|CBI82187.1| DNA processing chain A [Bartonella schoenbuchensis R1]
Length = 404
Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 49/67 (73%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
G+ LTD Q+++WLRL+RS+N+ P T R++I+++ +AE AL ++PEL+++G A R
Sbjct: 10 GIPLTDHQRLNWLRLLRSENVGPVTFRNLIDHYKTAENALAVLPELSRKGGRCAPIRIAT 69
Query: 70 QKNQQKK 76
++ +K+
Sbjct: 70 LEDAEKE 76
>gi|328543466|ref|YP_004303575.1| DNA protecting protein DprA [polymorphum gilvum SL003B-26A1]
gi|326413210|gb|ADZ70273.1| DNA protecting protein DprA, putative [Polymorphum gilvum
SL003B-26A1]
Length = 380
Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/48 (52%), Positives = 41/48 (85%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L++ Q+++WLRLIRS+N+ P+T R ++N+FGSAE+AL+ +P L++RG
Sbjct: 13 LSEAQRLAWLRLIRSENVGPSTFRALVNHFGSAERALDALPALSRRGG 60
>gi|240140065|ref|YP_002964542.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
gi|240010039|gb|ACS41265.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
Length = 397
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ LTD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R AGKRA
Sbjct: 1 MQLTDAQRLDWLRLIRTDGIGPRTFRSLINRFGSASAALDALPDLTKR----AGKRA 53
>gi|163844754|ref|YP_001622409.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
gi|163675477|gb|ABY39587.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
Length = 393
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLR IR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRFIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|254562490|ref|YP_003069585.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
gi|254269768|emb|CAX25740.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
Length = 397
Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ LTD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R AGKRA
Sbjct: 1 MQLTDAQRLDWLRLIRTDGIGPRTFRGLINRFGSASAALDALPDLTKR----AGKRA 53
>gi|23500346|ref|NP_699786.1| DNA processing protein DprA [Brucella suis 1330]
gi|161620664|ref|YP_001594550.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|254702977|ref|ZP_05164805.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|260568110|ref|ZP_05838579.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261753586|ref|ZP_05997295.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|23463962|gb|AAN33791.1| DNA processing protein DprA, putative [Brucella suis 1330]
gi|161337475|gb|ABX63779.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|260154775|gb|EEW89856.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261743339|gb|EEY31265.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
Length = 393
Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/60 (50%), Positives = 41/60 (68%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLR IR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRFIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
>gi|163852730|ref|YP_001640773.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
gi|163664335|gb|ABY31702.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
Length = 397
Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 31/57 (54%), Positives = 40/57 (70%), Gaps = 4/57 (7%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ LTD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R AGKRA
Sbjct: 1 MQLTDAQRLDWLRLIRTDGIGPRTFRGLINRFGSASAALDALPDLTKR----AGKRA 53
>gi|91977499|ref|YP_570158.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
gi|91683955|gb|ABE40257.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
Length = 422
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
+G LT+ Q+I WLRLIR+DN+ P T R ++N+FGSA ALE +PEL
Sbjct: 52 QGTTRLTEAQRIDWLRLIRADNVGPRTFRSLVNHFGSARAALERLPEL 99
>gi|86749541|ref|YP_486037.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
gi|86572569|gb|ABD07126.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
Length = 378
Score = 63.9 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
+G LT+ Q++ WLRLIR+DN+ P T R +IN+FGSA ALE +PEL
Sbjct: 8 QGTTVLTEAQRVDWLRLIRADNVGPRTFRSLINHFGSARAALERLPEL 55
>gi|163868294|ref|YP_001609503.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
gi|161017950|emb|CAK01508.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
Length = 404
Score = 63.5 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + + G+ LTD Q++SWLRL+RS+NI + R++I+Y+ +AE AL +PEL+++G
Sbjct: 1 MGRKTEINKGILLTDHQRLSWLRLLRSENIGAVSFRNLIDYYKTAENALAALPELSRKGG 60
>gi|75676200|ref|YP_318621.1| SMF protein [Nitrobacter winogradskyi Nb-255]
gi|74421070|gb|ABA05269.1| SMF protein [Nitrobacter winogradskyi Nb-255]
Length = 372
Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L++ Q+ WLRLIRSDN+ P T R ++N+FGSA +AL +P+LA+RG
Sbjct: 10 LSEAQRTDWLRLIRSDNVGPRTFRSLVNHFGSASEALVRLPDLARRGG 57
>gi|218531570|ref|YP_002422386.1| DNA protecting protein DprA [Methylobacterium chloromethanicum
CM4]
gi|218523873|gb|ACK84458.1| DNA protecting protein DprA [Methylobacterium chloromethanicum
CM4]
Length = 397
Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ TD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R AGKRA
Sbjct: 1 MQFTDAQRLDWLRLIRTDGIGPRTFRGLINRFGSASAALDALPDLTKR----AGKRA 53
>gi|299135144|ref|ZP_07028335.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
gi|298590121|gb|EFI50325.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
Length = 373
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/50 (52%), Positives = 37/50 (74%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ L D Q+I WLRLIRS+++ P T R ++N+ GSA ALE +P+LA+RG
Sbjct: 9 IRLNDGQRIDWLRLIRSEHVGPRTFRSLVNHCGSARAALERLPDLARRGG 58
>gi|85716403|ref|ZP_01047375.1| SMF protein [Nitrobacter sp. Nb-311A]
gi|85696760|gb|EAQ34646.1| SMF protein [Nitrobacter sp. Nb-311A]
Length = 372
Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 37/48 (77%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L + Q+I WLRLIRS+N+ P T R ++N+FGSA +AL +P+LA+RG
Sbjct: 10 LNEAQRIDWLRLIRSENVGPRTFRSLVNHFGSASEALIRLPDLARRGG 57
>gi|27380215|ref|NP_771744.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
gi|27353369|dbj|BAC50369.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
Length = 380
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+NP V LT+ ++I LRLIRSDN+ P T R ++++FGSA ALE +P+LA+RG
Sbjct: 12 INP---SVELTETERIDRLRLIRSDNVGPRTFRSLVDHFGSARAALERLPDLARRGGAAR 68
Query: 64 GKR 66
R
Sbjct: 69 SGR 71
>gi|316933647|ref|YP_004108629.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
gi|315601361|gb|ADU43896.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
Length = 378
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/47 (57%), Positives = 35/47 (74%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
G LT+ Q+I WLRLIR++N+ P T R +IN+FGSA ALE +PEL
Sbjct: 9 GTTVLTEAQRIDWLRLIRAENVGPRTFRSLINHFGSARAALERLPEL 55
>gi|39936183|ref|NP_948459.1| DNA processing protein DprA [Rhodopseudomonas palustris CGA009]
gi|39650038|emb|CAE28561.1| DNA processing chain A [Rhodopseudomonas palustris CGA009]
Length = 380
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
+G LT+ Q+I W+RLIR++N+ P T R +IN+FGSA ALE +PEL
Sbjct: 10 QGTTVLTEAQRIDWMRLIRAENVGPRTFRSLINHFGSARAALERLPEL 57
>gi|121602381|ref|YP_989130.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
gi|120614558|gb|ABM45159.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
Length = 396
Score = 61.2 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 46/67 (68%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
G LTD Q+++WLRL+RS+NI T R++I+++ +AE AL +PEL+++G + R
Sbjct: 4 GTQLTDYQRLNWLRLLRSENIGAVTFRNLIDHYKTAENALAALPELSKKGGLGTAIRVAT 63
Query: 70 QKNQQKK 76
++ +K+
Sbjct: 64 LEDAEKE 70
>gi|323136208|ref|ZP_08071290.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
gi|322398282|gb|EFY00802.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
Length = 424
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 26/49 (53%), Positives = 35/49 (71%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
G L+D+Q + WLRLIRS+NI P T R ++N FG A ALE +P++A R
Sbjct: 7 GARLSDEQLVDWLRLIRSENIGPRTFRQLVNRFGGARAALEALPDIAAR 55
>gi|254691038|ref|ZP_05154292.1| SMF protein [Brucella abortus bv. 6 str. 870]
Length = 381
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 LSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 48
>gi|300022164|ref|YP_003754775.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
gi|299523985|gb|ADJ22454.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
Length = 399
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 40/49 (81%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+L+D ++++ LRLIRS+N+ P T R++IN+FG A+ AL+ +PEL++RG
Sbjct: 16 ALSDAERLACLRLIRSENVGPVTFRELINHFGGAQNALDALPELSRRGG 64
>gi|192291901|ref|YP_001992506.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
gi|192285650|gb|ACF02031.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
Length = 378
Score = 60.8 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/43 (60%), Positives = 34/43 (79%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
LT+ Q+I WLRLIR++N+ P T R +IN+FGSA ALE +PEL
Sbjct: 13 LTEAQRIDWLRLIRAENVGPRTFRSLINHFGSARAALERLPEL 55
>gi|295982522|pdb|3MAJ|A Chain A, Crystal Structure Of Putative Dna Processing Protein
Dpra Fr Rhodopseudomonas Palustris Cga009
Length = 382
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/48 (54%), Positives = 35/48 (72%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
+G LT+ Q+I W RLIR++N+ P T R +IN+FGSA ALE +PEL
Sbjct: 12 QGTTVLTEAQRIDWXRLIRAENVGPRTFRSLINHFGSARAALERLPEL 59
>gi|240850661|ref|YP_002972061.1| DNA processing chain A [Bartonella grahamii as4aup]
gi|240267784|gb|ACS51372.1| DNA processing chain A [Bartonella grahamii as4aup]
Length = 404
Score = 60.5 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 41/51 (80%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G+ LTD Q+++WLRL+RS+NI + R++I+++ +AE ALE +PEL+++G
Sbjct: 10 GILLTDRQRLNWLRLLRSENIGAVSFRNLIDHYKTAENALEALPELSRKGG 60
>gi|118590183|ref|ZP_01547586.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
gi|118437155|gb|EAV43793.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
Length = 378
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 45/59 (76%), Gaps = 2/59 (3%)
Query: 4 MNPLKGG--VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MNP+ +L++ ++++WLRLIRS+N+ P T +++ + G+A++ALE++P+LA+RG
Sbjct: 1 MNPISDNRPTALSEAERLAWLRLIRSENVGPVTFSELLKHAGTAQRALELLPDLARRGG 59
>gi|49475582|ref|YP_033623.1| DNA processing chain A [Bartonella henselae str. Houston-1]
gi|49238389|emb|CAF27616.1| DNA processing chain A [Bartonella henselae str. Houston-1]
Length = 410
Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 47/67 (70%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
G+ LTD Q+++WLRL+RS+NI + R++I+++ +AE AL +PEL+++G + R
Sbjct: 16 GILLTDRQRLNWLRLLRSENIGAVSFRNLIDHYKTAENALAALPELSRKGGLATSIRIAT 75
Query: 70 QKNQQKK 76
++ +K+
Sbjct: 76 LEDAEKE 82
>gi|49474246|ref|YP_032288.1| DNA processing chain A [Bartonella quintana str. Toulouse]
gi|49239750|emb|CAF26132.1| DNA processing chain A [Bartonella quintana str. Toulouse]
Length = 410
Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 47/67 (70%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
G+ LTD Q++SWLRL+RS+NI + R++I+++ +AE AL +PEL+++G + R
Sbjct: 16 GILLTDRQRLSWLRLLRSENIGAVSFRNLIDHYKTAENALAALPELSRKGGLSKSLRIAT 75
Query: 70 QKNQQKK 76
++ +++
Sbjct: 76 LEDAERE 82
>gi|188582755|ref|YP_001926200.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
gi|179346253|gb|ACB81665.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
Length = 397
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 4/57 (7%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ LTD Q++ WLRLIR+ I P + R +IN FGSA AL+ +P+L +R AGKRA
Sbjct: 1 MQLTDAQRLDWLRLIRTGGIGPRSFRGLINRFGSASAALDALPDLTKR----AGKRA 53
>gi|319407290|emb|CBI80931.1| DNA processing chain A [Bartonella sp. 1-1C]
Length = 383
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 39/49 (79%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
LTD Q+++WLRL+RS+NI T R++I+++ +AE AL M+PEL++ G +
Sbjct: 2 LTDQQRLNWLRLLRSENIGAVTFRNLIDHYKTAENALAMLPELSKNGGL 50
>gi|319404285|emb|CBI77878.1| DNA processing chain A [Bartonella rochalimae ATCC BAA-1498]
Length = 383
Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 39/49 (79%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
LTD Q+++WLRL+RS+NI T R++I+++ +AE AL M+PEL++ G +
Sbjct: 2 LTDQQRLNWLRLLRSENIGAVTFRNLIDHYKTAENALAMLPELSKNGGL 50
>gi|241204123|ref|YP_002975219.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858013|gb|ACS55680.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 380
Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/51 (68%), Positives = 43/51 (84%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
GV+LT+ Q+I+WLRLIRSDNI PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 10 GVALTERQRIAWLRLIRSDNIGPATFRDLINHFGSAEAALAALPELSARGG 60
>gi|148256077|ref|YP_001240662.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
gi|146408250|gb|ABQ36756.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
Length = 372
Score = 58.9 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/57 (47%), Positives = 39/57 (68%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M+ + LTD ++ LRLIRSDN+ P T R ++N+FG+A AL+ +PELA+RG
Sbjct: 1 MDAISTRQELTDTERRDRLRLIRSDNVGPRTFRSLLNHFGTARAALDRLPELARRGG 57
>gi|319405728|emb|CBI79351.1| DNA processing chain A [Bartonella sp. AR 15-3]
Length = 383
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
LTD Q+++WLRL+RS+NI T R++I ++ +AE AL M+P+L ++G + R +
Sbjct: 2 LTDQQRLNWLRLLRSENIGAVTFRNLIEHYKTAENALAMLPQLNKKGGLAKSIRIATLDD 61
Query: 73 QQKK 76
+K+
Sbjct: 62 AEKE 65
>gi|116251502|ref|YP_767340.1| smf protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115256150|emb|CAK07231.1| putative smf protein [Rhizobium leguminosarum bv. viciae 3841]
Length = 380
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFG 43
GV LT+ Q+I+WLRLIRSDNI PAT RD+IN+FG
Sbjct: 10 GVVLTERQRIAWLRLIRSDNIGPATFRDLINHFG 43
>gi|86357273|ref|YP_469165.1| DNA processing chain A protein [Rhizobium etli CFN 42]
gi|86281375|gb|ABC90438.1| probable DNA processing chain A protein [Rhizobium etli CFN 42]
Length = 380
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 41/51 (80%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G L++ Q+I+WLRLIRSDN+ PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 10 GTVLSERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALAALPELSVRGG 60
>gi|296445900|ref|ZP_06887851.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
gi|296256568|gb|EFH03644.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
Length = 412
Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M+ V L+ +Q WLRLIRS+N+ P T R ++N FG AE AL+ +P L R A
Sbjct: 1 MSEPASAVRLSAEQLFHWLRLIRSENVGPRTFRQLVNRFGGAEAALDALPALVARSA 57
>gi|220923237|ref|YP_002498539.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
gi|219947844|gb|ACL58236.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
Length = 391
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQ 57
+ LTD Q++ WLRLIRS+ + P T R ++N FG A ALE +P+LA+
Sbjct: 1 MQLTDAQRLDWLRLIRSEGVGPRTFRGLVNRFGGAGAALEALPDLAR 47
>gi|209548899|ref|YP_002280816.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534655|gb|ACI54590.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 380
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 33/51 (64%), Positives = 41/51 (80%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G L++ Q+I+WLRLIRSDNI PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 10 GTVLSERQRIAWLRLIRSDNIGPATFRDLINHFGSAEAALAALPELSARGG 60
>gi|288958693|ref|YP_003449034.1| DNA processing protein [Azospirillum sp. B510]
gi|288911001|dbj|BAI72490.1| DNA processing protein [Azospirillum sp. B510]
Length = 378
Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 36/48 (75%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
LTD +++ W+RLIRS+N+ P T ++ ++G A +AL+ +P+LA+RG
Sbjct: 8 LTDSERLDWIRLIRSENVGPITFHRLLEHYGGAGKALDALPDLARRGG 55
>gi|304391708|ref|ZP_07373650.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
gi|303295937|gb|EFL90295.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
Length = 378
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
G+ L D+QK++WLRLIR+ + PAT D+I FG+A +AL +P+L
Sbjct: 9 AGIRLADEQKLAWLRLIRTPRVGPATFIDLIRRFGTASEALNALPDL 55
>gi|170742467|ref|YP_001771122.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
gi|168196741|gb|ACA18688.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
Length = 391
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQ 57
+ LTD Q++ WLRLIR++ I P T R ++N FG A ALE +P+LA+
Sbjct: 1 MQLTDAQRLDWLRLIRAEGIGPRTFRGLVNRFGGAGAALEALPDLAR 47
>gi|146341416|ref|YP_001206464.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
gi|146194222|emb|CAL78244.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
Length = 371
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M +NP L+ ++ LRLIRSD++ P T R +++ FG+A +AL+ +PELA+RG
Sbjct: 1 MDAINPT---TELSATERRDRLRLIRSDHVGPRTFRALLDQFGTARRALDRLPELARRGG 57
Query: 61 VYAGK 65
AG+
Sbjct: 58 ASAGR 62
>gi|218674768|ref|ZP_03524437.1| DNA processing chain A protein [Rhizobium etli GR56]
Length = 380
Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/51 (62%), Positives = 41/51 (80%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G L++ Q+I+WLRLIRSDN+ PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 10 GTVLSERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALAALPELSARGG 60
>gi|190891322|ref|YP_001977864.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
gi|190696601|gb|ACE90686.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
Length = 380
Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 22/34 (64%), Positives = 29/34 (85%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFG 43
G L++ Q+I+WLRLIRSDN+ PAT RD+IN+FG
Sbjct: 10 GTVLSERQRIAWLRLIRSDNVGPATFRDLINHFG 43
>gi|46200754|ref|ZP_00056433.2| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Magnetospirillum
magnetotacticum MS-1]
Length = 383
Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 36/53 (67%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+G L+ ++ WLRLIRS+N+ P T ++ FGSA +AL ++P+LA+RG
Sbjct: 11 EGKRQLSAAERFDWLRLIRSENVGPRTFSRLLERFGSAGEALAVLPDLARRGG 63
>gi|144898216|emb|CAM75080.1| DNA processing chain A [Magnetospirillum gryphiswaldense MSR-1]
Length = 377
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+L+ +++ WLRLIRS+N+ P T ++ FGSA +AL +P+LA+RG
Sbjct: 7 TLSASERLDWLRLIRSENVGPRTFIRLLERFGSAGRALAELPDLAKRGG 55
>gi|218513189|ref|ZP_03510029.1| DNA processing chain A protein [Rhizobium etli 8C-3]
Length = 352
Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/47 (63%), Positives = 39/47 (82%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
++ Q+I+WLRLIRSDN+ PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 1 SERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALAALPELSARGG 47
>gi|167645473|ref|YP_001683136.1| DNA protecting protein DprA [Caulobacter sp. K31]
gi|167347903|gb|ABZ70638.1| DNA protecting protein DprA [Caulobacter sp. K31]
Length = 366
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L+D ++++WLRL R++ + P ++ FGSAE+AL +PELA+R
Sbjct: 5 LSDKERLAWLRLARTETVGPVAFDHLLTRFGSAERALIALPELARRAG 52
>gi|154253273|ref|YP_001414097.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
gi|154157223|gb|ABS64440.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
Length = 372
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 35/48 (72%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L+ ++++ LRL RS+N+ P T RD++ +FG+A AL+ +P+LA RG
Sbjct: 5 LSPAERLARLRLARSENVGPVTFRDLLEHFGNALAALDALPDLASRGG 52
>gi|260431072|ref|ZP_05785043.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414900|gb|EEX08159.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
Length = 378
Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
T++ + SWLRL+RS + PAT R +++ GSA+ AL +PELA+ +
Sbjct: 17 TEEDRFSWLRLLRSRKVGPATFRRLLHEHGSAQNALAALPELARAAGI 64
>gi|114799220|ref|YP_760845.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
gi|114739394|gb|ABI77519.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
Length = 371
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
LTD Q++ WLRL R+ N+ P T ++ +G A +AL +PE+A R A
Sbjct: 7 LTDGQRLDWLRLARTQNVGPVTFAQLMLRYGDAGKALAALPEIASRAA 54
>gi|90417726|ref|ZP_01225638.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
gi|90337398|gb|EAS51049.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
Length = 376
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/51 (56%), Positives = 38/51 (74%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
GV L D+ +++WLRLIRS+N+ PAT R +IN +G AE AL +PELA RG
Sbjct: 10 GVRLPDETRLAWLRLIRSENVGPATFRSLINRYGGAEAALAALPELAARGG 60
>gi|46204190|ref|ZP_00050367.2| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Magnetospirillum
magnetotacticum MS-1]
Length = 182
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 39/56 (69%), Gaps = 4/56 (7%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
LTD Q++ WLRLIR++ + P T R +IN FGSA AL+ +P+L +R AGKRA
Sbjct: 3 LTDAQRLDWLRLIRTEGVGPRTFRGLINRFGSAAAALDALPDLTKR----AGKRAL 54
>gi|83594524|ref|YP_428276.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
gi|83577438|gb|ABC23989.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
Length = 374
Score = 48.1 bits (113), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 34/48 (70%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
LT +K+ LRL+R++N+ P T R ++ +GSA AL+ +P+LA+RG
Sbjct: 8 LTASEKLDRLRLLRTENVGPITWRRLMARYGSAASALDALPDLARRGG 55
>gi|99082178|ref|YP_614332.1| DNA processing protein DprA, putative [Ruegeria sp. TM1040]
gi|99038458|gb|ABF65070.1| DNA processing protein DprA putative [Ruegeria sp. TM1040]
Length = 382
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
T+DQ+ SWLRL+RS I T ++ +GSA+ LE +PELA V
Sbjct: 17 TEDQRYSWLRLLRSRGIGTVTFYRLLAEYGSAQNVLEKLPELAATSGV 64
>gi|56697910|ref|YP_168281.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
gi|56679647|gb|AAV96313.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
Length = 382
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
T++ + SWLRL+RS + P T R +++ G+A+ AL +PE+A+ V
Sbjct: 17 TEEDRFSWLRLLRSRRVGPTTFRRLMHEHGTAQNALAALPEVARAAGV 64
>gi|307292856|ref|ZP_07572702.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
gi|306880922|gb|EFN12138.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
Length = 360
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+++ ++ + LRLIRS I P T R ++ FGSA +AL +P+LA RG
Sbjct: 1 MSEQERFNRLRLIRSPRIGPVTFRQLMARFGSAGEALRAVPDLAARGG 48
>gi|149186760|ref|ZP_01865071.1| DNA processing chain A [Erythrobacter sp. SD-21]
gi|148829668|gb|EDL48108.1| DNA processing chain A [Erythrobacter sp. SD-21]
Length = 372
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+LT D+ + +RL+RS NI P + ++ FG+A +ALE +PEL ++G
Sbjct: 11 TLTQDEAFARIRLLRSPNIGPVSYAMLLARFGTAGEALEALPELGKKGG 59
>gi|87199818|ref|YP_497075.1| DNA processing protein DprA, putative [Novosphingobium
aromaticivorans DSM 12444]
gi|87135499|gb|ABD26241.1| DNA protecting protein DprA [Novosphingobium aromaticivorans DSM
12444]
Length = 375
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
+LT D+ + +RL+RS NI P + ++ F +A ALE +P+LA RGA G+ A+
Sbjct: 5 AAATLTRDEAFARIRLLRSPNIGPVSYHQLLRRFTTASAALEALPDLAVRGAA-RGRAAY 63
>gi|94497602|ref|ZP_01304171.1| DNA processing chain A [Sphingomonas sp. SKA58]
gi|94423019|gb|EAT08051.1| DNA processing chain A [Sphingomonas sp. SKA58]
Length = 360
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
+++ ++ LRLIRS I P + R ++ FGSA +AL IP LA+RG G RA V
Sbjct: 1 MSERERFDRLRLIRSPRIGPVSYRQLLARFGSASEALRAIPLLAERG----GGRASV 53
>gi|259418008|ref|ZP_05741927.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
gi|259346914|gb|EEW58728.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
Length = 382
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
T+DQ+ SWLRL+RS I T ++ +GSA+ LE +PE+A V
Sbjct: 17 TEDQRFSWLRLLRSRGIGTVTFYRLLAEYGSAQNVLEKLPEVAATSGV 64
>gi|163792865|ref|ZP_02186841.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
gi|159181511|gb|EDP66023.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
Length = 379
Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L +++ LRLIR++N+ P T R +I + +A AL+ +P+LA+RG
Sbjct: 8 LDQGERLDRLRLIRTENVGPVTFRHLIARYRTATAALQALPDLARRGG 55
>gi|295690151|ref|YP_003593844.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
gi|295432054|gb|ADG11226.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
Length = 365
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 33/48 (68%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L+D Q+++WLRL R++ + P ++ +G+ E+AL +P+L+++G
Sbjct: 6 LSDIQRLAWLRLARTETVGPVAFDHLLARYGTPERALSALPDLSRKGG 53
>gi|85708361|ref|ZP_01039427.1| DNA processing chain A [Erythrobacter sp. NAP1]
gi|85689895|gb|EAQ29898.1| DNA processing chain A [Erythrobacter sp. NAP1]
Length = 384
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 6 PLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
P + L+ + + +RL+RS N+ P T R ++ FGSAE ALE +P + RG
Sbjct: 8 PQQSKPRLSQTEAFARIRLLRSPNVGPVTYRQVLARFGSAEAALEQLPNVQLRG 61
>gi|16126686|ref|NP_421250.1| dprA protein [Caulobacter crescentus CB15]
gi|221235465|ref|YP_002517902.1| DNA processing protein [Caulobacter crescentus NA1000]
gi|13423992|gb|AAK24418.1| dprA protein [Caulobacter crescentus CB15]
gi|220964638|gb|ACL95994.1| DNA processing protein [Caulobacter crescentus NA1000]
Length = 365
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
L+D Q+ +WLRL R++ + P ++ +G+ E+AL +P+L+++G
Sbjct: 6 LSDIQRFAWLRLARTETVGPVAFDHLLTRYGTPERALSALPDLSRKGG 53
>gi|85373787|ref|YP_457849.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
gi|84786870|gb|ABC63052.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
Length = 367
Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 34/50 (68%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
V+L+ + + +RL+RS +I P + R ++ FG+AE ALE +P+L ++G
Sbjct: 4 VALSQAEAFARIRLLRSPHIGPVSYRQLMARFGTAEAALEALPDLGKKGG 53
>gi|83945523|ref|ZP_00957870.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
gi|83851099|gb|EAP88957.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
Length = 372
Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
SL+ +++ WLRL R+ + P T +I F +A +A++ +P+L++RG
Sbjct: 5 SLSPSERVDWLRLSRTSGVGPVTFAKLIERFETASRAIDALPDLSKRGG 53
>gi|294011703|ref|YP_003545163.1| DNA processing protein [Sphingobium japonicum UT26S]
gi|292675033|dbj|BAI96551.1| DNA processing protein [Sphingobium japonicum UT26S]
Length = 360
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+++ ++ + LRLIRS I P T R ++ FG+A +AL +P++A RG
Sbjct: 1 MSEQERFNRLRLIRSPRIGPVTFRQLMARFGTAGEALRALPDMAARGG 48
>gi|332185639|ref|ZP_08387387.1| DNA protecting protein DprA [Sphingomonas sp. S17]
gi|332014617|gb|EGI56674.1| DNA protecting protein DprA [Sphingomonas sp. S17]
Length = 359
Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 18 KISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ + LRL+R+ I P T R ++ FG AE ALE +P LA+RG A + A
Sbjct: 5 RFARLRLLRTHGIGPVTWRQLMARFGEAEVALEALPSLARRGGGEAPRPA 54
>gi|67458923|ref|YP_246547.1| putative DNA processing protein DprA [Rickettsia felis URRWXCal2]
gi|67004456|gb|AAY61382.1| Putatie DNA processing protein DprA [Rickettsia felis URRWXCal2]
Length = 382
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
D + I+ LRLIRS+NI P T +I FG A A++ P+ + RG + F + + +
Sbjct: 14 DIETINILRLIRSENIGPKTFFSLIKLFGDAATAIDNAPDFSLRGGKSKPIKIFSKSDAE 73
Query: 75 KK 76
K+
Sbjct: 74 KE 75
>gi|294084185|ref|YP_003550943.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663758|gb|ADE38859.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 367
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 32/44 (72%)
Query: 17 QKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+K++ +RLIR+ N+ P T + ++ + +A++AL IPELA+RG
Sbjct: 5 EKLARIRLIRTQNVGPMTYKLLMRRYKTAKEALRAIPELAKRGG 48
>gi|154247839|ref|YP_001418797.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
gi|154161924|gb|ABS69140.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
Length = 378
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G L+ Q++ WLRLIR++N+ P T R +IN FG A ALE +P LAQRG
Sbjct: 14 GELLSTTQRLDWLRLIRTENVGPRTFRALINQFGGAAAALEALPTLAQRGG 64
>gi|146278352|ref|YP_001168511.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
gi|145556593|gb|ABP71206.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
Length = 369
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
M P S D +++ LRLIRS + PAT R ++ GSA +ALE +P +A +
Sbjct: 1 MRPQAQNPSFPDRERVDRLRLIRSRRVGPATWRRLMAEHGSATRALEALPGIASAAGI 58
>gi|189183183|ref|YP_001936968.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
gi|189179954|dbj|BAG39734.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
Length = 386
Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 4/52 (7%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR 66
DD+ I LRL RS+N+ P T ++I FGSA+ AL+ + + + +G GKR
Sbjct: 15 DDETIYTLRLARSENVGPKTFFELIRLFGSAKVALQNVADFSLKG----GKR 62
>gi|103486697|ref|YP_616258.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
gi|98976774|gb|ABF52925.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
Length = 360
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGK 65
+ D ++++ LRLIR+ ++ P + ++ FGS E AL+ +P+L RG AGK
Sbjct: 1 MKDAERLARLRLIRTPHVGPVSWHQLMERFGSGEAALDALPDLVLRGG--AGK 51
>gi|319898957|ref|YP_004159050.1| DNA processing chain A [Bartonella clarridgeiae 73]
gi|319402921|emb|CBI76472.1| DNA processing chain A [Bartonella clarridgeiae 73]
Length = 383
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQKK 76
+RL+RS+NI T R++I+++ +AE AL ++P+L+++G + R + +K+
Sbjct: 1 MRLLRSENIGAVTFRNLIDHYKTAENALAILPKLSKKGGLPKSIRIATLDDAEKE 55
>gi|158424472|ref|YP_001525764.1| SMF protein [Azorhizobium caulinodans ORS 571]
gi|158331361|dbj|BAF88846.1| SMF protein [Azorhizobium caulinodans ORS 571]
Length = 374
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G L+ Q++ WLRLIR++N+ P T R +IN FG A ALE +P LA+RG
Sbjct: 5 GTRLSRAQRLDWLRLIRAENVGPRTFRALINQFGGAAAALEALPALARRGG 55
>gi|149200840|ref|ZP_01877815.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
gi|149145173|gb|EDM33199.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
Length = 356
Score = 42.7 bits (99), Expect = 0.019, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+SWLRL+RS + PAT ++ GSA+ AL +PE+A+ V
Sbjct: 1 MSWLRLLRSRRVGPATFHRLLAEHGSAQAALAALPEVARAAGV 43
>gi|157825577|ref|YP_001493297.1| putative DNA processing protein DprA [Rickettsia akari str.
Hartford]
gi|157799535|gb|ABV74789.1| Putatie DNA processing protein DprA [Rickettsia akari str.
Hartford]
Length = 107
Score = 42.4 bits (98), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
D + I+ LRLIRSDNI P T +I FG A A++ P+ + +G
Sbjct: 14 DIETINILRLIRSDNIGPKTFCSLIQLFGDAGTAIDNAPDFSLQGG 59
>gi|91205529|ref|YP_537884.1| putative DNA processing protein DprA [Rickettsia bellii RML369-C]
gi|91069073|gb|ABE04795.1| Putative DNA processing protein DprA [Rickettsia bellii RML369-C]
Length = 84
Score = 42.4 bits (98), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
D + I+ LRLIRS+N+ P T +I FG A ++E I + + RG
Sbjct: 16 DLETINILRLIRSENVGPKTFYSLIKLFGDAATSIENIGDFSLRGG 61
>gi|209964829|ref|YP_002297744.1| DNA processing protein DprA, putative [Rhodospirillum centenum
SW]
gi|209958295|gb|ACI98931.1| DNA processing protein DprA, putative [Rhodospirillum centenum
SW]
Length = 381
Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
LT +++ WLRL R++N+ P T ++ FG+A AL +P+LA+RG
Sbjct: 12 LTAAERLDWLRLTRAENVGPITFHRLVERFGTATAALAALPDLARRGG 59
>gi|302382941|ref|YP_003818764.1| DNA protecting protein DprA [Brevundimonas subvibrioides ATCC
15264]
gi|302193569|gb|ADL01141.1| DNA protecting protein DprA [Brevundimonas subvibrioides ATCC
15264]
Length = 360
Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+SL + ++ + LRL R+D + P + + ++ FG+A +AL+++P+L ++G
Sbjct: 1 MSLPEAERFARLRLARADRVGPVSFQQLLERFGTAVRALDVLPDLVRKGG 50
>gi|296535601|ref|ZP_06897782.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
gi|296264117|gb|EFH10561.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
Length = 364
Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
+S LRL R++ I P T R ++ G+AE AL+ +P L QRG
Sbjct: 7 LSLLRLARTEGIGPLTFRRLLERHGTAEAALDALPSLPQRG 47
>gi|148284625|ref|YP_001248715.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
gi|146740064|emb|CAM80189.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
Length = 386
Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR 66
DD+ I LRL RS+N+ P T ++I FGSA+ AL+ + + +G GKR
Sbjct: 15 DDETIYTLRLARSENVGPKTFFELIRLFGSAKIALQNVAYFSLKG----GKR 62
>gi|83309780|ref|YP_420044.1| Rossmann fold nucleotide-binding protein [Magnetospirillum
magneticum AMB-1]
gi|82944621|dbj|BAE49485.1| Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magneticum AMB-1]
Length = 383
Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+G L+ ++ WLRLIRS+N+ P T ++ FGSA AL +P+LA++G
Sbjct: 11 EGKRQLSAAERFDWLRLIRSENVGPRTFSRLLERFGSASAALAALPDLARKGG 63
>gi|260427296|ref|ZP_05781275.1| protein smf [Citreicella sp. SE45]
gi|260421788|gb|EEX15039.1| protein smf [Citreicella sp. SE45]
Length = 398
Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
++D + +WLRL+RS + PAT +++ G+A AL+ +P++A V
Sbjct: 19 SEDDRFAWLRLLRSRRVGPATFWRLLSEHGTAVAALDALPQVAAAAGV 66
>gi|254420463|ref|ZP_05034187.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
gi|196186640|gb|EDX81616.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
Length = 356
Score = 40.8 bits (94), Expect = 0.056, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
+SL+ D++ + LRL R+D I P ++ +GSA + LE++P+L ++
Sbjct: 1 MSLSADERFARLRLARTDRIGPVAFSQLLGRYGSAIRVLEVLPDLVRK 48
>gi|182680321|ref|YP_001834467.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182636204|gb|ACB96978.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 429
Score = 40.4 bits (93), Expect = 0.078, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
L + ++ WLRL RS+ I P T +++ + SA AL +P+LA+R
Sbjct: 14 LDERERFDWLRLSRSEMIGPRTFLSLLDRYRSASSALAAVPDLARR 59
>gi|170746908|ref|YP_001753168.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
gi|170653430|gb|ACB22485.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
Length = 403
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFG 43
+ LT+ Q++ WLRLIR++ + P T R ++N FG
Sbjct: 1 MQLTEAQRLDWLRLIRTEGVGPRTFRRLVNRFG 33
>gi|298291505|ref|YP_003693444.1| DNA protecting protein DprA [Starkeya novella DSM 506]
gi|296928016|gb|ADH88825.1| DNA protecting protein DprA [Starkeya novella DSM 506]
Length = 369
Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
GV L Q+ WLRLIR++N+ P R ++N FG A AL+ +P LA+RG
Sbjct: 5 GVQLDLGQRRDWLRLIRTENVGPRAFRSLVNRFGGAAAALDALPALARRGG 55
>gi|258541853|ref|YP_003187286.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256632931|dbj|BAH98906.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256635988|dbj|BAI01957.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-03]
gi|256639043|dbj|BAI05005.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-07]
gi|256642097|dbj|BAI08052.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-22]
gi|256645152|dbj|BAI11100.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-26]
gi|256648207|dbj|BAI14148.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-32]
gi|256651260|dbj|BAI17194.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654251|dbj|BAI20178.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-12]
Length = 208
Score = 39.7 bits (91), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
+ LRL R++ + P T R +++ +GSA +ALE +P L RG
Sbjct: 6 ACLRLARTEQVGPRTWRKLVDKYGSAAEALEALPYLPVRG 45
>gi|329114375|ref|ZP_08243137.1| Protein Smf [Acetobacter pomorum DM001]
gi|326696451|gb|EGE48130.1| Protein Smf [Acetobacter pomorum DM001]
Length = 412
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
LRL R++ + P T R +++ +GSA ALE +P L RG
Sbjct: 8 LRLARTEQVGPRTWRKLVDKYGSAAAALEALPYLPVRG 45
>gi|217979954|ref|YP_002364101.1| DNA protecting protein DprA [Methylocella silvestris BL2]
gi|217505330|gb|ACK52739.1| DNA protecting protein DprA [Methylocella silvestris BL2]
Length = 422
Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGK 65
+ +LT ++ ++LRL RS+ I P T ++ +GSA+ ALE +P G V +GK
Sbjct: 1 MTSAAALTPQERFAFLRLYRSETIGPRTFVALLARYGSAQAALEALP-----GVVASGK 54
>gi|329889387|ref|ZP_08267730.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
gi|328844688|gb|EGF94252.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
Length = 362
Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
+L++ ++ + LRL R+D + P ++ FGSAE+AL +P+L
Sbjct: 3 ALSEAERFARLRLARTDRVGPVAFSQLLQRFGSAERALNALPDL 46
>gi|326387674|ref|ZP_08209280.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207720|gb|EGD58531.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
Length = 383
Score = 39.3 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
++ ++ + LRL+RS NI P + ++ FGSA L +P+L+ RG
Sbjct: 15 SEAERFARLRLLRSPNIGPVSYYQLLRRFGSAIATLPALPDLSARGG 61
>gi|126725956|ref|ZP_01741798.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
gi|126705160|gb|EBA04251.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
Length = 390
Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
D+ I WL+L RS + PAT ++ GSA AL +PE+A+ V
Sbjct: 18 DETIRWLQLYRSRRVGPATFYRLMTEHGSAGAALLALPEVARTSGV 63
>gi|159043687|ref|YP_001532481.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
gi|157911447|gb|ABV92880.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
Length = 379
Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELA 56
D+ + WL+LIRS + P T ++ +G+A AL+ +PE+
Sbjct: 22 DEALDWLQLIRSPRVGPVTFHKLLAEYGTARAALDALPEVG 62
>gi|157827245|ref|YP_001496309.1| putative DNA processing protein DprA [Rickettsia bellii OSU
85-389]
gi|157802549|gb|ABV79272.1| Putative DNA processing protein DprA [Rickettsia bellii OSU
85-389]
Length = 66
Score = 38.9 bits (89), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
D + I+ LRLIRS+N+ P T +I F A ++E I + + RG
Sbjct: 16 DLETINILRLIRSENVGPKTFYSLIKLFSDAATSIENIGDFSLRG 60
>gi|58616939|ref|YP_196138.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
gi|58416551|emb|CAI27664.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
Length = 375
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVY 62
L+ + +S LRLIR+ +I P+T +I + + LE +PEL ++ Y
Sbjct: 7 LSYQELVSCLRLIRTQHIGPSTFSALIKIYKTCNNVLEALPELIKKSKAY 56
>gi|57238947|ref|YP_180083.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|58578880|ref|YP_197092.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|57161026|emb|CAH57932.1| putative DNA processing protein chain A [Ehrlichia ruminantium
str. Welgevonden]
gi|58417506|emb|CAI26710.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
Length = 375
Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVY 62
L+ + +S LRLIR+ +I P+T +I + + LE +PEL ++ Y
Sbjct: 7 LSYQELVSCLRLIRTQHIGPSTFSALIKIYKTCNNVLEALPELIKKSKAY 56
>gi|260752380|ref|YP_003225273.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258551743|gb|ACV74689.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 385
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG A K A
Sbjct: 8 SMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGGGQAPKIA 63
>gi|4511994|gb|AAD21554.1| DNA processing chain A [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG A K A
Sbjct: 8 SMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGGGQAPKIA 63
>gi|56552090|ref|YP_162929.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543664|gb|AAV89818.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 385
Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG A K A
Sbjct: 8 SMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGGGQAPKIA 63
>gi|329851389|ref|ZP_08266146.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
gi|328840235|gb|EGF89807.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
Length = 372
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 30/45 (66%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
+D ++I+ LRL R++ + P ++ FGSAE+AL+ +P L ++
Sbjct: 11 SDAERIARLRLARTNRVGPVNFASLMLRFGSAERALQELPNLVKQ 55
>gi|197104784|ref|YP_002130161.1| dprA protein [Phenylobacterium zucineum HLK1]
gi|196478204|gb|ACG77732.1| dprA protein [Phenylobacterium zucineum HLK1]
Length = 362
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ LTD Q+ WLRL R++N+ P T +I FG AL +P+LA+RG
Sbjct: 3 LKLTDAQRRDWLRLARTENVGPVTFDQLIQRFGEPALALAALPDLARRGG 52
>gi|88657722|ref|YP_507678.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
gi|88599179|gb|ABD44648.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
Length = 375
Score = 38.1 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
L+ + IS LR+IR+ NI P+T +I + + + LE++P L ++ +
Sbjct: 7 LSHQELISCLRVIRTPNIGPSTFHALIKLYKTCQHILEVLPNLIKKSKI 55
>gi|126729116|ref|ZP_01744930.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
gi|126710106|gb|EBA09158.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
Length = 372
Score = 37.7 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+ WLRL+RS + AT ++ GSA ALE +PE+A+ V
Sbjct: 1 MDWLRLLRSRRVGVATFWRLLGEHGSARAALEALPEVARAAGV 43
>gi|241762041|ref|ZP_04760125.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373507|gb|EER63094.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 385
Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG A K A
Sbjct: 8 SMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGGGQAPKIA 63
>gi|312115161|ref|YP_004012757.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
gi|311220290|gb|ADP71658.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
Length = 487
Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 29/53 (54%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
K S +K LRLIR+ +I T +I +FGSA A++ +PE + G+
Sbjct: 99 KSSASTPSAEKRDRLRLIRTPHIGTVTFWQLIAHFGSAAAAIDALPEFVKHGS 151
>gi|73666848|ref|YP_302864.1| SMF protein [Ehrlichia canis str. Jake]
gi|72393989|gb|AAZ68266.1| SMF protein [Ehrlichia canis str. Jake]
Length = 374
Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
+K L+ + IS +RLIR+ NI P+T ++ + + + LE++P L ++
Sbjct: 1 MKTKKELSYQEFISCIRLIRTPNIGPSTFHALVKLYKTCQHTLEVLPNLIKK 52
>gi|296283690|ref|ZP_06861688.1| DNA processing chain A [Citromicrobium bathyomarinum JL354]
Length = 363
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+L+ + + +RL+RS I P + ++ +GS E A+E +P +A++G
Sbjct: 3 ALSQAEAFARIRLLRSPRIGPVSFAQLLARYGSGEAAVEALPGIAKKGG 51
>gi|84685604|ref|ZP_01013501.1| DNA processing protein DprA, putative [Maritimibacter
alkaliphilus HTCC2654]
gi|84666270|gb|EAQ12743.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2654]
Length = 375
Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
++WLRL+RS + T ++ GSA+ AL+ +PE+A+ V
Sbjct: 1 MAWLRLLRSRRVGVTTFFRLMGEHGSAQAALDALPEVAKTAGV 43
>gi|326403290|ref|YP_004283371.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
gi|325050151|dbj|BAJ80489.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
Length = 373
Score = 35.4 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 18 KISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
K + LRLIR++ + P T R + F S +AL+ +P LA++
Sbjct: 4 KATLLRLIRTEGVGPRTFRRLRERFASPGEALDALPALARQ 44
>gi|148259743|ref|YP_001233870.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
gi|146401424|gb|ABQ29951.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
Length = 373
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 18 KISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
K + LRLIR++ + P T R + F S +AL+ +P LA++
Sbjct: 4 KATLLRLIRTEGVGPRTFRRLRERFASPGEALDALPALARQ 44
Searching..................................................done
Results from round 2
>gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus
str. psy62]
gi|254039980|gb|ACT56776.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus
str. psy62]
Length = 77
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 77/77 (100%), Positives = 77/77 (100%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA
Sbjct: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
Query: 61 VYAGKRAFVQKNQQKKS 77
VYAGKRAFVQKNQQKKS
Sbjct: 61 VYAGKRAFVQKNQQKKS 77
>gi|315122272|ref|YP_004062761.1| hypothetical protein CKC_02620 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495674|gb|ADR52273.1| hypothetical protein CKC_02620 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 298
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/76 (69%), Positives = 62/76 (81%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M K+NP K GV LTDDQKISWLRLIRSDNI PAT RDMINYFGSAEQALEMIPEL+QRG
Sbjct: 1 MTKINPQKRGVYLTDDQKISWLRLIRSDNIGPATFRDMINYFGSAEQALEMIPELSQRGD 60
Query: 61 VYAGKRAFVQKNQQKK 76
+ R + +++ +K+
Sbjct: 61 INKKIRIYSKESAEKE 76
>gi|319408534|emb|CBI82187.1| DNA processing chain A [Bartonella schoenbuchensis R1]
Length = 404
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 51/76 (67%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G+ LTD Q+++WLRL+RS+N+ P T R++I+++ +AE AL ++PEL+++G
Sbjct: 1 MALKTEINKGIPLTDHQRLNWLRLLRSENVGPVTFRNLIDHYKTAENALAVLPELSRKGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
A R ++ +K+
Sbjct: 61 RCAPIRIATLEDAEKE 76
>gi|49475582|ref|YP_033623.1| DNA processing chain A [Bartonella henselae str. Houston-1]
gi|49238389|emb|CAF27616.1| DNA processing chain A [Bartonella henselae str. Houston-1]
Length = 410
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 49/76 (64%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ + G+ LTD Q+++WLRL+RS+NI + R++I+++ +AE AL +PEL+++G
Sbjct: 7 LGHKTGVNKGILLTDRQRLNWLRLLRSENIGAVSFRNLIDHYKTAENALAALPELSRKGG 66
Query: 61 VYAGKRAFVQKNQQKK 76
+ R ++ +K+
Sbjct: 67 LATSIRIATLEDAEKE 82
>gi|163868294|ref|YP_001609503.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
gi|161017950|emb|CAK01508.1| DNA processing chain A [Bartonella tribocorum CIP 105476]
Length = 404
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 50/76 (65%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + + G+ LTD Q++SWLRL+RS+NI + R++I+Y+ +AE AL +PEL+++G
Sbjct: 1 MGRKTEINKGILLTDHQRLSWLRLLRSENIGAVSFRNLIDYYKTAENALAALPELSRKGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
A + ++ +K+
Sbjct: 61 GAASLKIASLEDAEKE 76
>gi|121602381|ref|YP_989130.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
gi|120614558|gb|ABM45159.1| DNA protecting protein DprA [Bartonella bacilliformis KC583]
Length = 396
Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 46/68 (67%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
G LTD Q+++WLRL+RS+NI T R++I+++ +AE AL +PEL+++G + R
Sbjct: 3 KGTQLTDYQRLNWLRLLRSENIGAVTFRNLIDHYKTAENALAALPELSKKGGLGTAIRVA 62
Query: 69 VQKNQQKK 76
++ +K+
Sbjct: 63 TLEDAEKE 70
>gi|240850661|ref|YP_002972061.1| DNA processing chain A [Bartonella grahamii as4aup]
gi|240267784|gb|ACS51372.1| DNA processing chain A [Bartonella grahamii as4aup]
Length = 404
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 49/76 (64%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G+ LTD Q+++WLRL+RS+NI + R++I+++ +AE ALE +PEL+++G
Sbjct: 1 MGLKTGINKGILLTDRQRLNWLRLLRSENIGAVSFRNLIDHYKTAENALEALPELSRKGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
+ ++ +K+
Sbjct: 61 GSVSIKIASLEDAEKE 76
>gi|150396156|ref|YP_001326623.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
gi|150027671|gb|ABR59788.1| DNA protecting protein DprA [Sinorhizobium medicae WSM419]
Length = 383
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 52/76 (68%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + V+LT+ QKI+WLRLIRSDN+ PAT RD+IN+FG+AE ALE +PEL++RG
Sbjct: 1 MPQGGARGAVVALTERQKIAWLRLIRSDNVGPATFRDLINHFGTAEAALEALPELSRRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R ++ +++
Sbjct: 61 AERSFRVATVEDAERE 76
>gi|163759336|ref|ZP_02166422.1| putative smf protein [Hoeflea phototrophica DFL-43]
gi|162283740|gb|EDQ34025.1| putative smf protein [Hoeflea phototrophica DFL-43]
Length = 383
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 36/76 (47%), Positives = 51/76 (67%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + GV LTD Q++SWLRLIRSDN+ PAT RD+IN+FGSA+ A+E +PEL++RG
Sbjct: 1 MSAGGEGRRGVVLTDRQRLSWLRLIRSDNVGPATFRDLINHFGSADAAIEQLPELSRRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 61 SARAIRVASIEEAERE 76
>gi|222148310|ref|YP_002549267.1| DNA protecting protein DprA [Agrobacterium vitis S4]
gi|221735298|gb|ACM36261.1| DNA protecting protein DprA [Agrobacterium vitis S4]
Length = 383
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G++LT+ Q+ +WLRLIRSDN+ PAT RD+IN FG+AE+AL+M+PEL+QRG
Sbjct: 1 MSAGGSGRSGIALTEKQRTAWLRLIRSDNVGPATFRDLINNFGTAERALDMLPELSQRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 ATRSIRIATVAEAERE 76
>gi|49474246|ref|YP_032288.1| DNA processing chain A [Bartonella quintana str. Toulouse]
gi|49239750|emb|CAF26132.1| DNA processing chain A [Bartonella quintana str. Toulouse]
Length = 410
Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 48/73 (65%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ G+ LTD Q++SWLRL+RS+NI + R++I+++ +AE AL +PEL+++G +
Sbjct: 10 KTGINKGILLTDRQRLSWLRLLRSENIGAVSFRNLIDHYKTAENALAALPELSRKGGLSK 69
Query: 64 GKRAFVQKNQQKK 76
R ++ +++
Sbjct: 70 SLRIATLEDAERE 82
>gi|306845936|ref|ZP_07478503.1| DNA protecting protein DprA [Brucella sp. BO1]
gi|306273571|gb|EFM55416.1| DNA protecting protein DprA [Brucella sp. BO1]
Length = 393
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIASVDEAERE 76
>gi|326410760|gb|ADZ67824.1| DNA protecting protein DprA [Brucella melitensis M28]
gi|326554052|gb|ADZ88691.1| DNA protecting protein DprA [Brucella melitensis M5-90]
Length = 393
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|254720411|ref|ZP_05182222.1| SMF protein [Brucella sp. 83/13]
gi|265985430|ref|ZP_06098165.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306839012|ref|ZP_07471833.1| DNA protecting protein DprA [Brucella sp. NF 2653]
gi|264664022|gb|EEZ34283.1| DNA protecting protein DprA [Brucella sp. 83/13]
gi|306405918|gb|EFM62176.1| DNA protecting protein DprA [Brucella sp. NF 2653]
Length = 393
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISMDEAERE 76
>gi|254699839|ref|ZP_05161667.1| SMF protein [Brucella suis bv. 5 str. 513]
gi|261750312|ref|ZP_05994021.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
gi|261740065|gb|EEY27991.1| DNA protecting protein DprA [Brucella suis bv. 5 str. 513]
Length = 393
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|225686388|ref|YP_002734360.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|256262471|ref|ZP_05465003.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
gi|225642493|gb|ACO02406.1| DNA protecting protein DprA [Brucella melitensis ATCC 23457]
gi|263092207|gb|EEZ16504.1| SMF protein [Brucella melitensis bv. 2 str. 63/9]
Length = 393
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|294853600|ref|ZP_06794272.1| DNA processing protein [Brucella sp. NVSL 07-0026]
gi|294819255|gb|EFG36255.1| DNA processing protein [Brucella sp. NVSL 07-0026]
Length = 393
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|17989012|ref|NP_541645.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|62317541|ref|YP_223394.1| DNA processing protein DprA [Brucella abortus bv. 1 str. 9-941]
gi|83269522|ref|YP_418813.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189022796|ref|YP_001932537.1| SMF protein [Brucella abortus S19]
gi|225629094|ref|ZP_03787127.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237817089|ref|ZP_04596081.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|254698822|ref|ZP_05160650.1| SMF protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254705901|ref|ZP_05167729.1| SMF protein [Brucella pinnipedialis M163/99/10]
gi|254711129|ref|ZP_05172940.1| SMF protein [Brucella pinnipedialis B2/94]
gi|254712412|ref|ZP_05174223.1| SMF protein [Brucella ceti M644/93/1]
gi|254715484|ref|ZP_05177295.1| SMF protein [Brucella ceti M13/05/1]
gi|254732269|ref|ZP_05190847.1| SMF protein [Brucella abortus bv. 4 str. 292]
gi|256015379|ref|YP_003105388.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|256029510|ref|ZP_05443124.1| SMF protein [Brucella pinnipedialis M292/94/1]
gi|256043499|ref|ZP_05446426.1| SMF protein [Brucella melitensis bv. 1 str. Rev.1]
gi|256059205|ref|ZP_05449411.1| SMF protein [Brucella neotomae 5K33]
gi|256157705|ref|ZP_05455623.1| SMF protein [Brucella ceti M490/95/1]
gi|256253323|ref|ZP_05458859.1| SMF protein [Brucella ceti B1/94]
gi|256256223|ref|ZP_05461759.1| SMF protein [Brucella abortus bv. 9 str. C68]
gi|260167399|ref|ZP_05754210.1| DNA processing protein DprA, putative [Brucella sp. F5/99]
gi|260544777|ref|ZP_05820598.1| SMF protein [Brucella abortus NCTC 8038]
gi|260564694|ref|ZP_05835179.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260760064|ref|ZP_05872412.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260763303|ref|ZP_05875635.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260882451|ref|ZP_05894065.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|261217219|ref|ZP_05931500.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261220439|ref|ZP_05934720.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|261313331|ref|ZP_05952528.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261318720|ref|ZP_05957917.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261320090|ref|ZP_05959287.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261323154|ref|ZP_05962351.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261756809|ref|ZP_06000518.1| SMF protein [Brucella sp. F5/99]
gi|265986518|ref|ZP_06099075.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|265989917|ref|ZP_06102474.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str.
Rev.1]
gi|265996210|ref|ZP_06108767.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|297249580|ref|ZP_06933281.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
gi|17984851|gb|AAL53909.1| smf protein [Brucella melitensis bv. 1 str. 16M]
gi|62197734|gb|AAX76033.1| hypothetical DprA, DNA processing protein [Brucella abortus bv. 1
str. 9-941]
gi|82939796|emb|CAJ12804.1| SMF protein [Brucella melitensis biovar Abortus 2308]
gi|189021370|gb|ACD74091.1| SMF protein [Brucella abortus S19]
gi|225615590|gb|EEH12639.1| DNA protecting protein DprA [Brucella ceti str. Cudo]
gi|237787902|gb|EEP62118.1| DNA protecting protein DprA [Brucella abortus str. 2308 A]
gi|255998039|gb|ACU49726.1| DNA processing protein DprA, putative [Brucella microti CCM 4915]
gi|260098048|gb|EEW81922.1| SMF protein [Brucella abortus NCTC 8038]
gi|260152337|gb|EEW87430.1| SMF protein [Brucella melitensis bv. 1 str. 16M]
gi|260670382|gb|EEX57322.1| DNA protecting protein DprA [Brucella abortus bv. 4 str. 292]
gi|260673724|gb|EEX60545.1| DNA protecting protein DprA [Brucella abortus bv. 2 str. 86/8/59]
gi|260871979|gb|EEX79048.1| DNA protecting protein DprA [Brucella abortus bv. 9 str. C68]
gi|260919023|gb|EEX85676.1| DNA protecting protein DprA [Brucella ceti B1/94]
gi|260922308|gb|EEX88876.1| DNA protecting protein DprA [Brucella ceti M13/05/1]
gi|261292780|gb|EEX96276.1| DNA protecting protein DprA [Brucella ceti M644/93/1]
gi|261297943|gb|EEY01440.1| DNA protecting protein DprA [Brucella pinnipedialis B2/94]
gi|261299134|gb|EEY02631.1| DNA protecting protein DprA [Brucella neotomae 5K33]
gi|261302357|gb|EEY05854.1| DNA protecting protein DprA [Brucella pinnipedialis M163/99/10]
gi|261736793|gb|EEY24789.1| SMF protein [Brucella sp. F5/99]
gi|262550507|gb|EEZ06668.1| DNA protecting protein DprA [Brucella ceti M490/95/1]
gi|263000586|gb|EEZ13276.1| DNA protecting protein DprA [Brucella melitensis bv. 1 str.
Rev.1]
gi|264658715|gb|EEZ28976.1| DNA protecting protein DprA [Brucella pinnipedialis M292/94/1]
gi|297173449|gb|EFH32813.1| DNA processing protein [Brucella abortus bv. 5 str. B3196]
Length = 393
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|307317859|ref|ZP_07597297.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
gi|306896621|gb|EFN27369.1| DNA protecting protein DprA [Sinorhizobium meliloti AK83]
Length = 383
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 50/76 (65%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G +L++ QKI+WLRLIRSDN+ PAT RD+I++FG+AE ALE +PEL++RG
Sbjct: 1 MPPGGARRTGTALSERQKIAWLRLIRSDNVGPATFRDLISHFGNAEAALEALPELSRRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 ADRSFRIATVDEAERE 76
>gi|325292667|ref|YP_004278531.1| DNA processing chain A [Agrobacterium sp. H13-3]
gi|325060520|gb|ADY64211.1| DNA processing chain A [Agrobacterium sp. H13-3]
Length = 379
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G+ L+ Q+++WLRLIRSDNI P T R++IN+FGSAE+AL +P+L++RG
Sbjct: 1 MPHEETTRQGIELSARQRVAWLRLIRSDNIGPVTFRELINHFGSAEKALSALPDLSRRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R Q + +
Sbjct: 61 SLRSPRIATQAEAEDE 76
>gi|153010990|ref|YP_001372204.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
gi|151562878|gb|ABS16375.1| DNA protecting protein DprA [Ochrobactrum anthropi ATCC 49188]
Length = 388
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI P T RD+I + GSA A+EM+P+L RG
Sbjct: 1 MKESANSKTGIRLSDRQRLNWLRLIRTDNIGPVTFRDLILFCGSASSAIEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 61 SARPIRVASMDDAERE 76
>gi|256111481|ref|ZP_05452495.1| SMF protein [Brucella melitensis bv. 3 str. Ether]
gi|265992978|ref|ZP_06105535.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str.
Ether]
gi|262763848|gb|EEZ09880.1| DNA protecting protein DprA [Brucella melitensis bv. 3 str.
Ether]
Length = 388
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|254695655|ref|ZP_05157483.1| SMF protein [Brucella abortus bv. 3 str. Tulya]
gi|261216055|ref|ZP_05930336.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
gi|260917662|gb|EEX84523.1| DNA protecting protein DprA [Brucella abortus bv. 3 str. Tulya]
Length = 393
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|148558431|ref|YP_001257589.1| SMF protein [Brucella ovis ATCC 25840]
gi|148369716|gb|ABQ62588.1| SMF protein [Brucella ovis ATCC 25840]
Length = 393
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|222085614|ref|YP_002544144.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
gi|221723062|gb|ACM26218.1| DNA protecting protein DprA [Agrobacterium radiobacter K84]
Length = 383
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 52/76 (68%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + + G++LT+ Q+I+WLRLIRSDN+ P+T RD+I ++GSAE AL +P+L+QRG
Sbjct: 1 MVAGSAGRTGIALTEKQRIAWLRLIRSDNVGPSTFRDLIQHYGSAEAALAALPDLSQRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++ ++
Sbjct: 61 ATRVIRIASEQDALRE 76
>gi|319404285|emb|CBI77878.1| DNA processing chain A [Bartonella rochalimae ATCC BAA-1498]
Length = 383
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 44/64 (68%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
LTD Q+++WLRL+RS+NI T R++I+++ +AE AL M+PEL++ G + R +
Sbjct: 2 LTDQQRLNWLRLLRSENIGAVTFRNLIDHYKTAENALAMLPELSKNGGLRKPIRIATLDD 61
Query: 73 QQKK 76
+K+
Sbjct: 62 AEKE 65
>gi|319407290|emb|CBI80931.1| DNA processing chain A [Bartonella sp. 1-1C]
Length = 383
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 26/64 (40%), Positives = 44/64 (68%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
LTD Q+++WLRL+RS+NI T R++I+++ +AE AL M+PEL++ G + R +
Sbjct: 2 LTDQQRLNWLRLLRSENIGAVTFRNLIDHYKTAENALAMLPELSKNGGLRKPIRIATLDD 61
Query: 73 QQKK 76
+K+
Sbjct: 62 AEKE 65
>gi|319405728|emb|CBI79351.1| DNA processing chain A [Bartonella sp. AR 15-3]
Length = 383
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 43/64 (67%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
LTD Q+++WLRL+RS+NI T R++I ++ +AE AL M+P+L ++G + R +
Sbjct: 2 LTDQQRLNWLRLLRSENIGAVTFRNLIEHYKTAENALAMLPQLNKKGGLAKSIRIATLDD 61
Query: 73 QQKK 76
+K+
Sbjct: 62 AEKE 65
>gi|15965054|ref|NP_385407.1| hypothetical protein SMc01363 [Sinorhizobium meliloti 1021]
gi|15074233|emb|CAC45880.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
Length = 383
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 49/69 (71%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ G +L++ QKI+WLRLIRSDN+ PAT RD+I++FG+AE ALE +PEL++RG R
Sbjct: 8 RTGTALSERQKIAWLRLIRSDNVGPATFRDLISHFGNAEAALEALPELSRRGGADRSFRI 67
Query: 68 FVQKNQQKK 76
+++
Sbjct: 68 ATVDEAERE 76
>gi|209884919|ref|YP_002288776.1| SMF protein [Oligotropha carboxidovorans OM5]
gi|209873115|gb|ACI92911.1| SMF protein [Oligotropha carboxidovorans OM5]
Length = 377
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M++ P+ LTD Q+I WLRLIRSDN+ P T R ++N++GSA ALE +PELA+RG
Sbjct: 1 MERQTPVP--TRLTDAQRIDWLRLIRSDNVGPRTFRSLVNHYGSARAALERLPELARRGG 58
Query: 61 VYAGKRAFVQKNQQKK 76
R ++ +++
Sbjct: 59 ASRLGRICSIEDAERE 74
>gi|307301126|ref|ZP_07580895.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
gi|306904081|gb|EFN34667.1| DNA protecting protein DprA [Sinorhizobium meliloti BL225C]
Length = 383
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/69 (47%), Positives = 49/69 (71%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ G +L++ QKI+WLRLIRSDN+ PAT RD+I++FG+AE ALE +PEL++RG R
Sbjct: 8 RTGTALSERQKIAWLRLIRSDNVGPATFRDLISHFGNAEAALEALPELSRRGGADRSFRI 67
Query: 68 FVQKNQQKK 76
+++
Sbjct: 68 ATVDEAERE 76
>gi|163844754|ref|YP_001622409.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
gi|163675477|gb|ABY39587.1| DNA protecting protein DprA [Brucella suis ATCC 23445]
Length = 393
Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLR IR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRFIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|23500346|ref|NP_699786.1| DNA processing protein DprA [Brucella suis 1330]
gi|161620664|ref|YP_001594550.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|254702977|ref|ZP_05164805.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|260568110|ref|ZP_05838579.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261753586|ref|ZP_05997295.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
gi|23463962|gb|AAN33791.1| DNA processing protein DprA, putative [Brucella suis 1330]
gi|161337475|gb|ABX63779.1| DNA protecting protein DprA [Brucella canis ATCC 23365]
gi|260154775|gb|EEW89856.1| SMF protein [Brucella suis bv. 4 str. 40]
gi|261743339|gb|EEY31265.1| DNA protecting protein DprA [Brucella suis bv. 3 str. 686]
Length = 393
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 45/76 (59%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
MK+ K G+ L+D Q+++WLR IR+DNI T RD+I + GSA ALEM+P+L RG
Sbjct: 1 MKQGANPKTGIRLSDRQRLNWLRFIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R +++
Sbjct: 61 SARPIRIISVDEAERE 76
>gi|15888630|ref|NP_354311.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
gi|15156358|gb|AAK87096.1| DNA processing chain A [Agrobacterium tumefaciens str. C58]
Length = 380
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 47/76 (61%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G+ L+ Q+++WLRLIRSDNI P T R++IN+FGSAE+AL+ +PEL++ G
Sbjct: 1 MPHEETTRQGIELSARQRVAWLRLIRSDNIGPVTFRELINHFGSAEKALDALPELSKHGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +
Sbjct: 61 SSRRLRIATPSEAEGE 76
>gi|299135144|ref|ZP_07028335.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
gi|298590121|gb|EFI50325.1| DNA protecting protein DprA [Afipia sp. 1NLS2]
Length = 373
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M ++ + L D Q+I WLRLIRS+++ P T R ++N+ GSA ALE +P+LA+RG
Sbjct: 1 MDRLA--SAPIRLNDGQRIDWLRLIRSEHVGPRTFRSLVNHCGSARAALERLPDLARRGG 58
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 59 ASRPGRICSLEEAERE 74
>gi|227821656|ref|YP_002825626.1| DNA processing chain A [Sinorhizobium fredii NGR234]
gi|227340655|gb|ACP24873.1| DNA processing chain A [Sinorhizobium fredii NGR234]
Length = 386
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/62 (54%), Positives = 46/62 (74%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+ G +LT+ Q+I+WLRLIRSDN+ PAT RD++N+FGSAE ALE +PEL++RG R
Sbjct: 8 RNGTALTERQRIAWLRLIRSDNVGPATFRDLVNHFGSAEAALEALPELSRRGGAGGQFRV 67
Query: 68 FV 69
Sbjct: 68 AS 69
>gi|115525378|ref|YP_782289.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisA53]
gi|115519325|gb|ABJ07309.1| DNA protecting protein DprA [Rhodopseudomonas palustris BisA53]
Length = 372
Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ + +LTD Q++ WLRLIRSDN+ P T R ++N+FGSA AL+ +P+LA+RG
Sbjct: 1 MDNDRQSTTLTDAQRLDWLRLIRSDNVGPRTFRSLVNHFGSARAALDRLPDLARRGGAAR 60
Query: 64 GKRAFVQKNQQKK 76
R + +
Sbjct: 61 PGRIVSEHEAHLE 73
>gi|90423747|ref|YP_532117.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
gi|90105761|gb|ABD87798.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB18]
Length = 372
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ + L+D Q++ WLRLIRSDN+ P T R ++N+FGSA ALE +P+LA+RG
Sbjct: 1 MDNEQRTSHLSDAQRLDWLRLIRSDNVGPRTFRSLVNHFGSARAALERLPDLARRGGAAR 60
Query: 64 GKRAFVQKNQQKK 76
R + +
Sbjct: 61 PGRIVSEHEAHLE 73
>gi|254474217|ref|ZP_05087608.1| DNA processing chain A [Pseudovibrio sp. JE062]
gi|211956747|gb|EEA91956.1| DNA processing chain A [Pseudovibrio sp. JE062]
Length = 397
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 1/69 (1%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
L+D Q+++WLRLIRS+N+ P T R+++N+FGSA+ AL+ +PEL++RG R
Sbjct: 7 SRAPHLSDTQRLAWLRLIRSENVGPRTFRELLNHFGSAQAALDALPELSRRGG-KKSYRL 65
Query: 68 FVQKNQQKK 76
F Q + +
Sbjct: 66 FSQDKAEAE 74
>gi|328543466|ref|YP_004303575.1| DNA protecting protein DprA [polymorphum gilvum SL003B-26A1]
gi|326413210|gb|ADZ70273.1| DNA protecting protein DprA, putative [Polymorphum gilvum
SL003B-26A1]
Length = 380
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + L++ Q+++WLRLIRS+N+ P+T R ++N+FGSAE+AL+ +P L++RG
Sbjct: 1 MSRGPEPAKTPRLSEAQRLAWLRLIRSENVGPSTFRALVNHFGSAERALDALPALSRRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +
Sbjct: 61 -KPSIRVCPLHEAENE 75
>gi|300022164|ref|YP_003754775.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
gi|299523985|gb|ADJ22454.1| DNA protecting protein DprA [Hyphomicrobium denitrificans ATCC
51888]
Length = 399
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 45/66 (68%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
+L+D ++++ LRLIRS+N+ P T R++IN+FG A+ AL+ +PEL++RG R
Sbjct: 15 AALSDAERLACLRLIRSENVGPVTFRELINHFGGAQNALDALPELSRRGGFGRPVRVCPA 74
Query: 71 KNQQKK 76
+ +++
Sbjct: 75 PDAERE 80
>gi|27380215|ref|NP_771744.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
gi|27353369|dbj|BAC50369.1| DNA processing protein [Bradyrhizobium japonicum USDA 110]
Length = 380
Score = 99.3 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 2 KKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
++ + V LT+ ++I LRLIRSDN+ P T R ++++FGSA ALE +P+LA+RG
Sbjct: 7 DAVDAINPSVELTETERIDRLRLIRSDNVGPRTFRSLVDHFGSARAALERLPDLARRGGA 66
Query: 62 YAGKRAFVQKNQQKK 76
R + +
Sbjct: 67 ARSGRICSADEAKAE 81
>gi|148256077|ref|YP_001240662.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
gi|146408250|gb|ABQ36756.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. BTAi1]
Length = 372
Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ + LTD ++ LRLIRSDN+ P T R ++N+FG+A AL+ +PELA+RG
Sbjct: 1 MDAISTRQELTDTERRDRLRLIRSDNVGPRTFRSLLNHFGTARAALDRLPELARRGGAAR 60
Query: 64 GKRAFVQKNQQKK 76
R + +
Sbjct: 61 VGRICTIDEAEAE 73
>gi|92117808|ref|YP_577537.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
gi|91800702|gb|ABE63077.1| DNA processing protein DprA, putative [Nitrobacter hamburgensis
X14]
Length = 372
Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/66 (48%), Positives = 43/66 (65%), Gaps = 3/66 (4%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M NP + LTD Q+I WLRLIRS+N+ P T R ++N+FGSA +AL +P+LA+RG
Sbjct: 1 MDIRNPDR---RLTDSQRIDWLRLIRSENVGPRTFRSLVNHFGSAGEALARLPDLARRGG 57
Query: 61 VYAGKR 66
R
Sbjct: 58 ASRPGR 63
>gi|13470875|ref|NP_102444.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
gi|14021618|dbj|BAB48230.1| DNA processing chain A [Mesorhizobium loti MAFF303099]
Length = 377
Score = 97.8 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ G L+D Q+++WLRLIR+ N+ PA+ RD+IN FGSAE ALE++PEL G
Sbjct: 1 MSEPAAGPRLSDRQRLNWLRLIRTQNVGPASFRDLINRFGSAEVALEILPELMVSGGASR 60
Query: 64 GKRA 67
R
Sbjct: 61 IARI 64
>gi|319783706|ref|YP_004143182.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169594|gb|ADV13132.1| DNA protecting protein DprA [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 379
Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ G L+D Q++SWLRLIR+ N+ PA+ RD+IN FGSAE ALE++PEL G
Sbjct: 1 MSEPTAGPRLSDRQRLSWLRLIRTQNVGPASFRDLINRFGSAEAALEILPELMISGGAIR 60
Query: 64 GKRA 67
R
Sbjct: 61 IARI 64
>gi|307946437|ref|ZP_07661772.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
gi|307770101|gb|EFO29327.1| DNA protecting protein DprA [Roseibium sp. TrichSKD4]
Length = 378
Score = 97.0 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR 66
L + Q+++WLRLIRS+N+ P T RD+IN+FGSA+ AL +PE++ RG R
Sbjct: 6 PHKTPCLPEAQRLAWLRLIRSENVGPHTFRDLINHFGSADAALAALPEMSARGG-KRTLR 64
Query: 67 AFVQKNQQKK 76
+ + +
Sbjct: 65 VSPLHDAEAE 74
>gi|254691038|ref|ZP_05154292.1| SMF protein [Brucella abortus bv. 6 str. 870]
Length = 381
Score = 96.2 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
L+D Q+++WLRLIR+DNI T RD+I + GSA ALEM+P+L RG R
Sbjct: 1 LSDRQRLNWLRLIRTDNIGAVTFRDLILFCGSASNALEMLPDLNIRGGSARPIRIISVDE 60
Query: 73 QQKK 76
+++
Sbjct: 61 AERE 64
>gi|85716403|ref|ZP_01047375.1| SMF protein [Nitrobacter sp. Nb-311A]
gi|85696760|gb|EAQ34646.1| SMF protein [Nitrobacter sp. Nb-311A]
Length = 372
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M NP + L + Q+I WLRLIRS+N+ P T R ++N+FGSA +AL +P+LA+RG
Sbjct: 1 MDIRNPDR---RLNEAQRIDWLRLIRSENVGPRTFRSLVNHFGSASEALIRLPDLARRGG 57
Query: 61 VYAGKRAFVQKNQQKK 76
R + + +
Sbjct: 58 ASRPGRLCAEAEARNE 73
>gi|288958693|ref|YP_003449034.1| DNA processing protein [Azospirillum sp. B510]
gi|288911001|dbj|BAI72490.1| DNA processing protein [Azospirillum sp. B510]
Length = 378
Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 41/64 (64%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
LTD +++ W+RLIRS+N+ P T ++ ++G A +AL+ +P+LA+RG R +
Sbjct: 8 LTDSERLDWIRLIRSENVGPITFHRLLEHYGGAGKALDALPDLARRGGRAKPLRIAAKAE 67
Query: 73 QQKK 76
+++
Sbjct: 68 AERE 71
>gi|260459178|ref|ZP_05807433.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
gi|259034732|gb|EEW35988.1| DNA protecting protein DprA [Mesorhizobium opportunistum WSM2075]
Length = 383
Score = 95.5 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 42/66 (63%)
Query: 2 KKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
++ G L+D Q++SWLRLIR+ N+ PA+ RD+IN FGSAE ALE++PEL G
Sbjct: 6 TAVSEPAAGPRLSDRQRLSWLRLIRTQNVGPASFRDLINRFGSAEVALEVLPELMISGGA 65
Query: 62 YAGKRA 67
R
Sbjct: 66 NRIARI 71
>gi|46200754|ref|ZP_00056433.2| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Magnetospirillum
magnetotacticum MS-1]
Length = 383
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+G L+ ++ WLRLIRS+N+ P T ++ FGSA +AL ++P+LA+RG R
Sbjct: 11 EGKRQLSAAERFDWLRLIRSENVGPRTFSRLLERFGSAGEALAVLPDLARRGGARRPIRI 70
Query: 68 FVQKNQQKK 76
+ + +++
Sbjct: 71 CPKSDAERE 79
>gi|75676200|ref|YP_318621.1| SMF protein [Nitrobacter winogradskyi Nb-255]
gi|74421070|gb|ABA05269.1| SMF protein [Nitrobacter winogradskyi Nb-255]
Length = 372
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 41/65 (63%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
L++ Q+ WLRLIRSDN+ P T R ++N+FGSA +AL +P+LA+RG R +
Sbjct: 9 RLSEAQRTDWLRLIRSDNVGPRTFRSLVNHFGSASEALVRLPDLARRGGASRPSRLCTEA 68
Query: 72 NQQKK 76
+ +
Sbjct: 69 EARNE 73
>gi|110633709|ref|YP_673917.1| DNA protecting protein DprA [Mesorhizobium sp. BNC1]
gi|110284693|gb|ABG62752.1| DNA protecting protein DprA [Chelativorans sp. BNC1]
Length = 378
Score = 95.1 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 5 NPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
P GG L D Q+ +WLRLIR++N+ PAT R +IN FGSAE+AL+ +PELA+RG
Sbjct: 4 APPAGGPKLDDRQRQAWLRLIRTENVGPATFRMLINRFGSAEEALKALPELARRGGA 60
>gi|254501021|ref|ZP_05113172.1| DNA protecting protein DprA, putative [Labrenzia alexandrii
DFL-11]
gi|222437092|gb|EEE43771.1| DNA protecting protein DprA, putative [Labrenzia alexandrii
DFL-11]
Length = 378
Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
+ L++ Q+++WLRLIRS+N+ P T RD++N+ GSAE+AL+++PEL++RG R
Sbjct: 8 KTLRLSEAQRLAWLRLIRSENVGPTTFRDLLNHTGSAEKALQLLPELSRRGG-KKSYRLC 66
Query: 69 VQKNQQKK 76
Q + + +
Sbjct: 67 TQDDAEAE 74
>gi|86749541|ref|YP_486037.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
gi|86572569|gb|ABD07126.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
HaA2]
Length = 378
Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 48/76 (63%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + + +G LT+ Q++ WLRLIR+DN+ P T R +IN+FGSA ALE +PELA+RG
Sbjct: 1 MGERSSDQGTTVLTEAQRVDWLRLIRADNVGPRTFRSLINHFGSARAALERLPELARRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 61 AARAGRIPSEDEARRE 76
>gi|118590183|ref|ZP_01547586.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
gi|118437155|gb|EAV43793.1| hypothetical protein SIAM614_11733 [Stappia aggregata IAM 12614]
Length = 378
Score = 90.1 bits (222), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 50/75 (66%), Gaps = 4/75 (5%)
Query: 4 MNPLKGG--VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
MNP+ +L++ ++++WLRLIRS+N+ P T +++ + G+A++ALE++P+LA+RG
Sbjct: 1 MNPISDNRPTALSEAERLAWLRLIRSENVGPVTFSELLKHAGTAQRALELLPDLARRGG- 59
Query: 62 YAGKRAFVQKNQQKK 76
R ++ + +
Sbjct: 60 -KTGRICSVEDAEAE 73
>gi|316933647|ref|YP_004108629.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
gi|315601361|gb|ADU43896.1| DNA protecting protein DprA [Rhodopseudomonas palustris DX-1]
Length = 378
Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G LT+ Q+I WLRLIR++N+ P T R +IN+FGSA ALE +PELA+RG
Sbjct: 1 MGERGSDPGTTVLTEAQRIDWLRLIRAENVGPRTFRSLINHFGSARAALERLPELARRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 61 AARAGRIPSEDEARRE 76
>gi|323136208|ref|ZP_08071290.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
gi|322398282|gb|EFY00802.1| DNA protecting protein DprA [Methylocystis sp. ATCC 49242]
Length = 424
Score = 88.9 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ G L+D+Q + WLRLIRS+NI P T R ++N FG A ALE +P++A R
Sbjct: 1 MSGAAPGARLSDEQLVDWLRLIRSENIGPRTFRQLVNRFGGARAALEALPDIAARSLRDR 60
Query: 64 GKRAFVQKNQQKK 76
R + ++
Sbjct: 61 SIRIAPRDEIVQE 73
>gi|296445900|ref|ZP_06887851.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
gi|296256568|gb|EFH03644.1| DNA protecting protein DprA [Methylosinus trichosporium OB3b]
Length = 412
Score = 88.5 bits (218), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ V L+ +Q WLRLIRS+N+ P T R ++N FG AE AL+ +P L R A
Sbjct: 1 MSEPASAVRLSAEQLFHWLRLIRSENVGPRTFRQLVNRFGGAEAALDALPALVARSAQGR 60
Query: 64 GKRAFVQKNQQKK 76
R + +
Sbjct: 61 KIRIAEADEIRAE 73
>gi|91977499|ref|YP_570158.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
gi|91683955|gb|ABE40257.1| DNA processing protein DprA, putative [Rhodopseudomonas palustris
BisB5]
Length = 422
Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+G LT+ Q+I WLRLIR+DN+ P T R ++N+FGSA ALE +PELA+RG R
Sbjct: 52 QGTTRLTEAQRIDWLRLIRADNVGPRTFRSLVNHFGSARAALERLPELARRGGAARAGRI 111
Query: 68 FVQKNQQKK 76
+ +++
Sbjct: 112 PSEDEARRE 120
>gi|114707187|ref|ZP_01440085.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
gi|114537383|gb|EAU40509.1| DNA processing chain A [Fulvimarina pelagi HTCC2506]
Length = 377
Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
K GV+ T D ++SWLRL RS+N+ P T R +IN FG AE ALE +PELA+RG
Sbjct: 8 KKGVAFTYDMQVSWLRLYRSENVGPVTFRQLINRFGGAEAALEALPELAERGG 60
>gi|319898957|ref|YP_004159050.1| DNA processing chain A [Bartonella clarridgeiae 73]
gi|319402921|emb|CBI76472.1| DNA processing chain A [Bartonella clarridgeiae 73]
Length = 383
Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQKK 76
+RL+RS+NI T R++I+++ +AE AL ++P+L+++G + R + +K+
Sbjct: 1 MRLLRSENIGAVTFRNLIDHYKTAENALAILPKLSKKGGLPKSIRIATLDDAEKE 55
>gi|146341416|ref|YP_001206464.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
gi|146194222|emb|CAL78244.1| DNA processing chain A (DprA/Smf) [Bradyrhizobium sp. ORS278]
Length = 371
Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M+ + L+ ++ LRLIRSD++ P T R +++ FG+A +AL+ +PELA+RG A
Sbjct: 1 MDAINPTTELSATERRDRLRLIRSDHVGPRTFRALLDQFGTARRALDRLPELARRGGASA 60
Query: 64 GKRAFVQKNQQKK 76
G R + +
Sbjct: 61 G-RICSIDEAEAE 72
>gi|163792865|ref|ZP_02186841.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
gi|159181511|gb|EDP66023.1| Predicted Rossmann fold nucleotide-binding protein [alpha
proteobacterium BAL199]
Length = 379
Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 36/70 (51%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR 66
L +++ LRLIR++N+ P T R +I + +A AL+ +P+LA+RG
Sbjct: 2 PTALPHLDQGERLDRLRLIRTENVGPVTFRHLIARYRTATAALQALPDLARRGGRRRSLN 61
Query: 67 AFVQKNQQKK 76
+ +++
Sbjct: 62 VPSIGDAERE 71
>gi|240140065|ref|YP_002964542.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
gi|240010039|gb|ACS41265.1| DNA protecting protein DprA [Methylobacterium extorquens AM1]
Length = 397
Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 28/64 (43%), Positives = 40/64 (62%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
+ LTD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R A V+
Sbjct: 1 MQLTDAQRLDWLRLIRTDGIGPRTFRSLINRFGSASAALDALPDLTKRAGKRAVPPTKVE 60
Query: 71 KNQQ 74
++
Sbjct: 61 AERE 64
>gi|39936183|ref|NP_948459.1| DNA processing protein DprA [Rhodopseudomonas palustris CGA009]
gi|39650038|emb|CAE28561.1| DNA processing chain A [Rhodopseudomonas palustris CGA009]
Length = 380
Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ + + +G LT+ Q+I W+RLIR++N+ P T R +IN+FGSA ALE +PELA+RG
Sbjct: 3 VGERSSDQGTTVLTEAQRIDWMRLIRAENVGPRTFRSLINHFGSARAALERLPELARRGG 62
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 63 AARAGRIPSEDEARRE 78
>gi|144898216|emb|CAM75080.1| DNA processing chain A [Magnetospirillum gryphiswaldense MSR-1]
Length = 377
Score = 87.0 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
+L+ +++ WLRLIRS+N+ P T ++ FGSA +AL +P+LA+RG +
Sbjct: 7 TLSASERLDWLRLIRSENVGPRTFIRLLERFGSAGRALAELPDLAKRGGRARPIVVCPKD 66
Query: 72 NQQKK 76
++
Sbjct: 67 AALRE 71
>gi|86357273|ref|YP_469165.1| DNA processing chain A protein [Rhizobium etli CFN 42]
gi|86281375|gb|ABC90438.1| probable DNA processing chain A protein [Rhizobium etli CFN 42]
Length = 380
Score = 87.0 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 47/76 (61%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G L++ Q+I+WLRLIRSDN+ PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 1 MDAPSAGSKGTVLSERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALAALPELSVRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + ++
Sbjct: 61 ATRAIRIASEAEAHRE 76
>gi|192291901|ref|YP_001992506.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
gi|192285650|gb|ACF02031.1| DNA protecting protein DprA [Rhodopseudomonas palustris TIE-1]
Length = 378
Score = 86.6 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + K LT+ Q+I WLRLIR++N+ P T R +IN+FGSA ALE +PELA+RG
Sbjct: 1 MAERAKTKDQRHLTEAQRIDWLRLIRAENVGPRTFRSLINHFGSARAALERLPELARRGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 61 AARAGRIPSEDEARRE 76
>gi|154253273|ref|YP_001414097.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
gi|154157223|gb|ABS64440.1| DNA protecting protein DprA [Parvibaculum lavamentivorans DS-1]
Length = 372
Score = 86.6 bits (213), Expect = 9e-16, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 39/64 (60%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
L+ ++++ LRL RS+N+ P T RD++ +FG+A AL+ +P+LA RG + +
Sbjct: 5 LSPAERLARLRLARSENVGPVTFRDLLEHFGNALAALDALPDLASRGGARRSIKIASAAD 64
Query: 73 QQKK 76
+ +
Sbjct: 65 AEAE 68
>gi|241204123|ref|YP_002975219.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
gi|240858013|gb|ACS55680.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 380
Score = 86.2 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 50/76 (65%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M ++ GV+LT+ Q+I+WLRLIRSDNI PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 1 MDALSAGPKGVALTERQRIAWLRLIRSDNIGPATFRDLINHFGSAEAALAALPELSARGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + ++
Sbjct: 61 ATRAIRIASEAEAHRE 76
>gi|295982522|pdb|3MAJ|A Chain A, Crystal Structure Of Putative Dna Processing Protein
Dpra Fr Rhodopseudomonas Palustris Cga009
Length = 382
Score = 86.2 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ + + +G LT+ Q+I W RLIR++N+ P T R +IN+FGSA ALE +PELA+RG
Sbjct: 5 VGERSSDQGTTVLTEAQRIDWXRLIRAENVGPRTFRSLINHFGSARAALERLPELARRGG 64
Query: 61 VYAGKRAFVQKNQQKK 76
R + +++
Sbjct: 65 AARAGRIPSEDEARRE 80
>gi|254562490|ref|YP_003069585.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
gi|254269768|emb|CAX25740.1| DNA protecting protein DprA [Methylobacterium extorquens DM4]
Length = 397
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ LTD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R A
Sbjct: 1 MQLTDAQRLDWLRLIRTDGIGPRTFRGLINRFGSASAALDALPDLTKRAGKRA 53
>gi|116251502|ref|YP_767340.1| smf protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115256150|emb|CAK07231.1| putative smf protein [Rhizobium leguminosarum bv. viciae 3841]
Length = 380
Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/76 (48%), Positives = 49/76 (64%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M ++ GV LT+ Q+I+WLRLIRSDNI PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 1 MDALSAGPKGVVLTERQRIAWLRLIRSDNIGPATFRDLINHFGSAEAALAALPELSARGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + ++
Sbjct: 61 ATRAIRIASEAEAHRE 76
>gi|163852730|ref|YP_001640773.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
gi|163664335|gb|ABY31702.1| DNA protecting protein DprA [Methylobacterium extorquens PA1]
Length = 397
Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 27/53 (50%), Positives = 36/53 (67%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ LTD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R A
Sbjct: 1 MQLTDAQRLDWLRLIRTDGIGPRTFRGLINRFGSASAALDALPDLTKRAGKRA 53
>gi|209548899|ref|YP_002280816.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
gi|209534655|gb|ACI54590.1| DNA protecting protein DprA [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 380
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M ++ G L++ Q+I+WLRLIRSDNI PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 1 MDALSAGPKGTVLSERQRIAWLRLIRSDNIGPATFRDLINHFGSAEAALAALPELSARGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + ++
Sbjct: 61 ATRAIRIASEAEAHRE 76
>gi|83594524|ref|YP_428276.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
gi|83577438|gb|ABC23989.1| SMF protein [Rhodospirillum rubrum ATCC 11170]
Length = 374
Score = 84.7 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
LT +K+ LRL+R++N+ P T R ++ +GSA AL+ +P+LA+RG R
Sbjct: 4 AARPLTASEKLDRLRLLRTENVGPITWRRLMARYGSAASALDALPDLARRGGGAKPLRIC 63
Query: 69 VQKNQQKK 76
+++
Sbjct: 64 PLAAAKRE 71
>gi|218531570|ref|YP_002422386.1| DNA protecting protein DprA [Methylobacterium chloromethanicum
CM4]
gi|218523873|gb|ACK84458.1| DNA protecting protein DprA [Methylobacterium chloromethanicum
CM4]
Length = 397
Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ TD Q++ WLRLIR+D I P T R +IN FGSA AL+ +P+L +R A
Sbjct: 1 MQFTDAQRLDWLRLIRTDGIGPRTFRGLINRFGSASAALDALPDLTKRAGKRA 53
>gi|218674768|ref|ZP_03524437.1| DNA processing chain A protein [Rhizobium etli GR56]
Length = 380
Score = 84.3 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 47/76 (61%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + G L++ Q+I+WLRLIRSDN+ PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 1 MDAPSAGSKGTVLSERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALAALPELSARGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + ++
Sbjct: 61 ATRAIRIASEAEAHRE 76
>gi|220923237|ref|YP_002498539.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
gi|219947844|gb|ACL58236.1| DNA protecting protein DprA [Methylobacterium nodulans ORS 2060]
Length = 391
Score = 83.9 bits (206), Expect = 6e-15, Method: Composition-based stats.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
+ LTD Q++ WLRLIRS+ + P T R ++N FG A ALE +P+LA+ + +
Sbjct: 1 MQLTDAQRLDWLRLIRSEGVGPRTFRGLVNRFGGAGAALEALPDLARARG--KAVKVMTK 58
Query: 71 KNQQKK 76
+++
Sbjct: 59 AQGERE 64
>gi|188582755|ref|YP_001926200.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
gi|179346253|gb|ACB81665.1| DNA protecting protein DprA [Methylobacterium populi BJ001]
Length = 397
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ LTD Q++ WLRLIR+ I P + R +IN FGSA AL+ +P+L +R A
Sbjct: 1 MQLTDAQRLDWLRLIRTGGIGPRSFRGLINRFGSASAALDALPDLTKRAGKRA 53
>gi|190891322|ref|YP_001977864.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
gi|190696601|gb|ACE90686.1| DNA processing chain A protein [Rhizobium etli CIAT 652]
Length = 380
Score = 81.6 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 46/76 (60%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M G L++ Q+I+WLRLIRSDN+ PAT RD+IN+FGSAE AL +PEL+ RG
Sbjct: 1 MDAPRAGPKGTVLSERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALAALPELSARGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + ++
Sbjct: 61 ATRAIRIASEAEAHRE 76
>gi|83309780|ref|YP_420044.1| Rossmann fold nucleotide-binding protein [Magnetospirillum
magneticum AMB-1]
gi|82944621|dbj|BAE49485.1| Predicted Rossmann fold nucleotide-binding protein
[Magnetospirillum magneticum AMB-1]
Length = 383
Score = 80.8 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+G L+ ++ WLRLIRS+N+ P T ++ FGSA AL +P+LA++G R
Sbjct: 11 EGKRQLSAAERFDWLRLIRSENVGPRTFSRLLERFGSASAALAALPDLARKGGARRPIRI 70
Query: 68 FVQKNQQKK 76
+ + +++
Sbjct: 71 CPKADAERE 79
>gi|307292856|ref|ZP_07572702.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
gi|306880922|gb|EFN12138.1| DNA protecting protein DprA [Sphingobium chlorophenolicum L-1]
Length = 360
Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+++ ++ + LRLIRS I P T R ++ FGSA +AL +P+LA RG A
Sbjct: 1 MSEQERFNRLRLIRSPRIGPVTFRQLMARFGSAGEALRAVPDLAARGGGKASIVDAKAVE 60
Query: 73 QQ 74
Q+
Sbjct: 61 QE 62
>gi|294011703|ref|YP_003545163.1| DNA processing protein [Sphingobium japonicum UT26S]
gi|292675033|dbj|BAI96551.1| DNA processing protein [Sphingobium japonicum UT26S]
Length = 360
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+++ ++ + LRLIRS I P T R ++ FG+A +AL +P++A RG A
Sbjct: 1 MSEQERFNRLRLIRSPRIGPVTFRQLMARFGTAGEALRALPDMAARGGGKASIVDAKIIE 60
Query: 73 QQ 74
Q+
Sbjct: 61 QE 62
>gi|304391708|ref|ZP_07373650.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
gi|303295937|gb|EFL90295.1| DNA protecting protein DprA [Ahrensia sp. R2A130]
Length = 378
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPEL 55
M G+ L D+QK++WLRLIR+ + PAT D+I FG+A +AL +P+L
Sbjct: 1 MSDALAPTAGIRLADEQKLAWLRLIRTPRVGPATFIDLIRRFGTASEALNALPDL 55
>gi|170742467|ref|YP_001771122.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
gi|168196741|gb|ACA18688.1| DNA protecting protein DprA [Methylobacterium sp. 4-46]
Length = 391
Score = 79.3 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQ 57
+ LTD Q++ WLRLIR++ I P T R ++N FG A ALE +P+LA+
Sbjct: 1 MQLTDAQRLDWLRLIRAEGIGPRTFRGLVNRFGGAGAALEALPDLAR 47
>gi|167645473|ref|YP_001683136.1| DNA protecting protein DprA [Caulobacter sp. K31]
gi|167347903|gb|ABZ70638.1| DNA protecting protein DprA [Caulobacter sp. K31]
Length = 366
Score = 78.5 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR 66
L+D ++++WLRL R++ + P ++ FGSAE+AL +PELA+R + R
Sbjct: 5 LSDKERLAWLRLARTETVGPVAFDHLLTRFGSAERALIALPELARRAGRASPLR 58
>gi|260431072|ref|ZP_05785043.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
gi|260414900|gb|EEX08159.1| DNA protecting protein DprA [Silicibacter lacuscaerulensis
ITI-1157]
Length = 378
Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/48 (43%), Positives = 33/48 (68%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
T++ + SWLRL+RS + PAT R +++ GSA+ AL +PELA+ +
Sbjct: 17 TEEDRFSWLRLLRSRKVGPATFRRLLHEHGSAQNALAALPELARAAGI 64
>gi|83945523|ref|ZP_00957870.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
gi|83851099|gb|EAP88957.1| dprA protein [Oceanicaulis alexandrii HTCC2633]
Length = 372
Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
SL+ +++ WLRL R+ + P T +I F +A +A++ +P+L++RG +A +
Sbjct: 5 SLSPSERVDWLRLSRTSGVGPVTFAKLIERFETASRAIDALPDLSKRGGRAKPLKAIARD 64
Query: 72 NQQKK 76
+ +
Sbjct: 65 QAEDE 69
>gi|103486697|ref|YP_616258.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
gi|98976774|gb|ABF52925.1| DNA processing protein DprA, putative [Sphingopyxis alaskensis
RB2256]
Length = 360
Score = 76.6 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+ D ++++ LRLIR+ ++ P + ++ FGS E AL+ +P+L RG R +
Sbjct: 1 MKDAERLARLRLIRTPHVGPVSWHQLMERFGSGEAALDALPDLVLRGGAGKA-RIAPAEV 59
Query: 73 QQKK 76
+++
Sbjct: 60 AERE 63
>gi|114799220|ref|YP_760845.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
gi|114739394|gb|ABI77519.1| DNA protecting protein DprA [Hyphomonas neptunium ATCC 15444]
Length = 371
Score = 76.2 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 31/55 (56%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
LTD Q++ WLRL R+ N+ P T ++ +G A +AL +PE+A R A
Sbjct: 7 LTDGQRLDWLRLARTQNVGPVTFAQLMLRYGDAGKALAALPEIASRAARGKSITI 61
>gi|218513189|ref|ZP_03510029.1| DNA processing chain A protein [Rhizobium etli 8C-3]
Length = 352
Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 43/63 (68%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQ 73
++ Q+I+WLRLIRSDN+ PAT RD+IN+FGSAE AL +PEL+ RG R +
Sbjct: 1 SERQRIAWLRLIRSDNVGPATFRDLINHFGSAEAALAALPELSARGGATRAIRIASEAEA 60
Query: 74 QKK 76
++
Sbjct: 61 HRE 63
>gi|16126686|ref|NP_421250.1| dprA protein [Caulobacter crescentus CB15]
gi|221235465|ref|YP_002517902.1| DNA processing protein [Caulobacter crescentus NA1000]
gi|13423992|gb|AAK24418.1| dprA protein [Caulobacter crescentus CB15]
gi|220964638|gb|ACL95994.1| DNA processing protein [Caulobacter crescentus NA1000]
Length = 365
Score = 75.4 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 37/65 (56%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
L+D Q+ +WLRL R++ + P ++ +G+ E+AL +P+L+++G ++
Sbjct: 5 RLSDIQRFAWLRLARTETVGPVAFDHLLTRYGTPERALSALPDLSRKGGRAVPLSLPPRE 64
Query: 72 NQQKK 76
+++
Sbjct: 65 AIEQE 69
>gi|67458923|ref|YP_246547.1| putative DNA processing protein DprA [Rickettsia felis URRWXCal2]
gi|67004456|gb|AAY61382.1| Putatie DNA processing protein DprA [Rickettsia felis URRWXCal2]
Length = 382
Score = 75.4 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
D + I+ LRLIRS+NI P T +I FG A A++ P+ + RG + F + + +
Sbjct: 14 DIETINILRLIRSENIGPKTFFSLIKLFGDAATAIDNAPDFSLRGGKSKPIKIFSKSDAE 73
Query: 75 KK 76
K+
Sbjct: 74 KE 75
>gi|56697910|ref|YP_168281.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
gi|56679647|gb|AAV96313.1| DNA processing protein DprA, putative [Ruegeria pomeroyi DSS-3]
Length = 382
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
T++ + SWLRL+RS + P T R +++ G+A+ AL +PE+A+ V
Sbjct: 17 TEEDRFSWLRLLRSRRVGPTTFRRLMHEHGTAQNALAALPEVARAAGV 64
>gi|85708361|ref|ZP_01039427.1| DNA processing chain A [Erythrobacter sp. NAP1]
gi|85689895|gb|EAQ29898.1| DNA processing chain A [Erythrobacter sp. NAP1]
Length = 384
Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 39/72 (54%)
Query: 6 PLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGK 65
P + L+ + + +RL+RS N+ P T R ++ FGSAE ALE +P + RG
Sbjct: 8 PQQSKPRLSQTEAFARIRLLRSPNVGPVTYRQVLARFGSAEAALEQLPNVQLRGNKTFRP 67
Query: 66 RAFVQKNQQKKS 77
A + +++ +S
Sbjct: 68 AAAERIDREIES 79
>gi|295690151|ref|YP_003593844.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
gi|295432054|gb|ADG11226.1| DNA protecting protein DprA [Caulobacter segnis ATCC 21756]
Length = 365
Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 38/65 (58%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
L+D Q+++WLRL R++ + P ++ +G+ E+AL +P+L+++G ++
Sbjct: 5 RLSDIQRLAWLRLARTETVGPVAFDHLLARYGTPERALSALPDLSRKGGRAVPLTLPPRE 64
Query: 72 NQQKK 76
+++
Sbjct: 65 AIERE 69
>gi|99082178|ref|YP_614332.1| DNA processing protein DprA, putative [Ruegeria sp. TM1040]
gi|99038458|gb|ABF65070.1| DNA processing protein DprA putative [Ruegeria sp. TM1040]
Length = 382
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQ 73
T+DQ+ SWLRL+RS I T ++ +GSA+ LE +PELA V G + + +
Sbjct: 17 TEDQRYSWLRLLRSRGIGTVTFYRLLAEYGSAQNVLEKLPELAATSGV-KGYKIYSKDAL 75
Query: 74 QKK 76
+
Sbjct: 76 DAE 78
>gi|209964829|ref|YP_002297744.1| DNA processing protein DprA, putative [Rhodospirillum centenum
SW]
gi|209958295|gb|ACI98931.1| DNA processing protein DprA, putative [Rhodospirillum centenum
SW]
Length = 381
Score = 74.3 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ LT +++ WLRL R++N+ P T ++ FG+A AL +P+LA+RG
Sbjct: 3 IQSPTARRPLTAAERLDWLRLTRAENVGPITFHRLVERFGTATAALAALPDLARRGGRAK 62
Query: 64 GKRAFVQKNQQKK 76
R + +++
Sbjct: 63 PLRVPSKVEVERE 75
>gi|90417726|ref|ZP_01225638.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
gi|90337398|gb|EAS51049.1| DNA processing protein DprA, putative [Aurantimonas manganoxydans
SI85-9A1]
Length = 376
Score = 73.9 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + GV L D+ +++WLRLIRS+N+ PAT R +IN +G AE AL +PELA RG
Sbjct: 1 MSPSDAPPHGVRLPDETRLAWLRLIRSENVGPATFRSLINRYGGAEAALAALPELAARGG 60
Query: 61 VYAGKRAFVQKNQQKK 76
R + +
Sbjct: 61 --RSVRVESLAAAEDE 74
>gi|94497602|ref|ZP_01304171.1| DNA processing chain A [Sphingomonas sp. SKA58]
gi|94423019|gb|EAT08051.1| DNA processing chain A [Sphingomonas sp. SKA58]
Length = 360
Score = 73.9 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+++ ++ LRLIRS I P + R ++ FGSA +AL IP LA+RG A
Sbjct: 1 MSERERFDRLRLIRSPRIGPVSYRQLLARFGSASEALRAIPLLAERGGGRASVADAGAVE 60
Query: 73 QQ 74
++
Sbjct: 61 RE 62
>gi|87199818|ref|YP_497075.1| DNA processing protein DprA, putative [Novosphingobium
aromaticivorans DSM 12444]
gi|87135499|gb|ABD26241.1| DNA protecting protein DprA [Novosphingobium aromaticivorans DSM
12444]
Length = 375
Score = 73.5 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 6 PLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGK 65
+LT D+ + +RL+RS NI P + ++ F +A ALE +P+LA RGA G+
Sbjct: 2 NAAAAATLTRDEAFARIRLLRSPNIGPVSYHQLLRRFTTASAALEALPDLAVRGAA-RGR 60
Query: 66 RAFVQKNQQK 75
A+ ++
Sbjct: 61 AAYRPIPTER 70
>gi|149186760|ref|ZP_01865071.1| DNA processing chain A [Erythrobacter sp. SD-21]
gi|148829668|gb|EDL48108.1| DNA processing chain A [Erythrobacter sp. SD-21]
Length = 372
Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
+LT D+ + +RL+RS NI P + ++ FG+A +ALE +PEL ++G RA +
Sbjct: 10 ATLTQDEAFARIRLLRSPNIGPVSYAMLLARFGTAGEALEALPELGKKGG--RQYRAAPR 67
Query: 71 KNQQKK 76
+++
Sbjct: 68 DRIERE 73
>gi|85373787|ref|YP_457849.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
gi|84786870|gb|ABC63052.1| DNA processing chain A [Erythrobacter litoralis HTCC2594]
Length = 367
Score = 73.1 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
V+L+ + + +RL+RS +I P + R ++ FG+AE ALE +P+L ++G R +
Sbjct: 4 VALSQAEAFARIRLLRSPHIGPVSYRQLMARFGTAEAALEALPDLGKKGG--RQYRPAPR 61
Query: 71 KNQQKK 76
+++
Sbjct: 62 DRIERE 67
>gi|326387674|ref|ZP_08209280.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207720|gb|EGD58531.1| DNA processing protein DprA, putative [Novosphingobium
nitrogenifigens DSM 19370]
Length = 383
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 34/76 (44%)
Query: 2 KKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+ ++ ++ + LRL+RS NI P + ++ FGSA L +P+L+ RG
Sbjct: 3 TRGANWGPASEASEAERFARLRLLRSPNIGPVSYYQLLRRFGSAIATLPALPDLSARGGA 62
Query: 62 YAGKRAFVQKNQQKKS 77
+ + ++
Sbjct: 63 PYRPIGTDRIEAEVEA 78
>gi|158424472|ref|YP_001525764.1| SMF protein [Azorhizobium caulinodans ORS 571]
gi|158331361|dbj|BAF88846.1| SMF protein [Azorhizobium caulinodans ORS 571]
Length = 374
Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
G L+ Q++ WLRLIR++N+ P T R +IN FG A ALE +P LA+RG R
Sbjct: 5 GTRLSRAQRLDWLRLIRAENVGPRTFRALINQFGGAAAALEALPALARRGGRLMPPRIPT 64
Query: 70 QKNQQKK 76
Q +
Sbjct: 65 LDEAQAE 71
>gi|182680321|ref|YP_001834467.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica
ATCC 9039]
gi|182636204|gb|ACB96978.1| DNA protecting protein DprA [Beijerinckia indica subsp. indica
ATCC 9039]
Length = 429
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR 66
L + ++ WLRL RS+ I P T +++ + SA AL +P+LA+R +
Sbjct: 8 PLAQKELDERERFDWLRLSRSEMIGPRTFLSLLDRYRSASSALAAVPDLARRKG--RPIK 65
Query: 67 AFVQKNQQKK 76
+ +++
Sbjct: 66 LADTSDVERE 75
>gi|259418008|ref|ZP_05741927.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
gi|259346914|gb|EEW58728.1| DNA protecting protein DprA [Silicibacter sp. TrichCH4B]
Length = 382
Score = 72.0 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQ 73
T+DQ+ SWLRL+RS I T ++ +GSA+ LE +PE+A V G + + +
Sbjct: 17 TEDQRFSWLRLLRSRGIGTVTFYRLLAEYGSAQNVLEKLPEVAATSGV-KGYKTYSKDAL 75
Query: 74 QKK 76
+
Sbjct: 76 DAE 78
>gi|294084185|ref|YP_003550943.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
gi|292663758|gb|ADE38859.1| DNA protecting protein DprA [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 367
Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
+K++ +RLIR+ N+ P T + ++ + +A++AL IPELA+RG + +
Sbjct: 4 SEKLARIRLIRTQNVGPMTYKLLMRRYKTAKEALRAIPELAKRGGRKLVPASLAVAEAE 62
>gi|146278352|ref|YP_001168511.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
gi|145556593|gb|ABP71206.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17025]
Length = 369
Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
M P S D +++ LRLIRS + PAT R ++ GSA +ALE +P +A +
Sbjct: 1 MRPQAQNPSFPDRERVDRLRLIRSRRVGPATWRRLMAEHGSATRALEALPGIASAAGIDR 60
>gi|154247839|ref|YP_001418797.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
gi|154161924|gb|ABS69140.1| DNA protecting protein DprA [Xanthobacter autotrophicus Py2]
Length = 378
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/70 (41%), Positives = 39/70 (55%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR 66
G L+ Q++ WLRLIR++N+ P T R +IN FG A ALE +P LAQRG R
Sbjct: 11 PGPGELLSTTQRLDWLRLIRTENVGPRTFRALINQFGGAAAALEALPTLAQRGGRLLPPR 70
Query: 67 AFVQKNQQKK 76
+ Q +
Sbjct: 71 IPDLPDAQAE 80
>gi|302382941|ref|YP_003818764.1| DNA protecting protein DprA [Brevundimonas subvibrioides ATCC
15264]
gi|302193569|gb|ADL01141.1| DNA protecting protein DprA [Brevundimonas subvibrioides ATCC
15264]
Length = 360
Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 35/50 (70%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+SL + ++ + LRL R+D + P + + ++ FG+A +AL+++P+L ++G
Sbjct: 1 MSLPEAERFARLRLARADRVGPVSFQQLLERFGTAVRALDVLPDLVRKGG 50
>gi|157825577|ref|YP_001493297.1| putative DNA processing protein DprA [Rickettsia akari str.
Hartford]
gi|157799535|gb|ABV74789.1| Putatie DNA processing protein DprA [Rickettsia akari str.
Hartford]
Length = 107
Score = 68.9 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
D + I+ LRLIRSDNI P T +I FG A A++ P+ + +G + F + +
Sbjct: 14 DIETINILRLIRSDNIGPKTFCSLIQLFGDAGTAIDNAPDFSLQGGQSKQIKIFNKSDAA 73
Query: 75 KK 76
K+
Sbjct: 74 KE 75
>gi|329889387|ref|ZP_08267730.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
gi|328844688|gb|EGF94252.1| DNA protecting protein DprA [Brevundimonas diminuta ATCC 11568]
Length = 362
Score = 68.1 bits (165), Expect = 3e-10, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
+L++ ++ + LRL R+D + P ++ FGSAE+AL +P+L + G
Sbjct: 2 TALSEAERFARLRLARTDRVGPVAFSQLLQRFGSAERALNALPDLIRSRGRS-GYSIPTP 60
Query: 71 KNQQKK 76
+ + +
Sbjct: 61 ETVEAE 66
>gi|332185639|ref|ZP_08387387.1| DNA protecting protein DprA [Sphingomonas sp. S17]
gi|332014617|gb|EGI56674.1| DNA protecting protein DprA [Sphingomonas sp. S17]
Length = 359
Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 18 KISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFV 69
+ + LRL+R+ I P T R ++ FG AE ALE +P LA+RG A + A
Sbjct: 5 RFARLRLLRTHGIGPVTWRQLMARFGEAEVALEALPSLARRGGGEAPRPADT 56
>gi|159043687|ref|YP_001532481.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
gi|157911447|gb|ABV92880.1| DNA protecting protein DprA [Dinoroseobacter shibae DFL 12]
Length = 379
Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQ 73
+ D+ + WL+LIRS + P T ++ +G+A AL+ +PE+ + R +
Sbjct: 20 SVDEALDWLQLIRSPRVGPVTFHKLLAEYGTARAALDALPEVGSAAGL-KDLRPIARDRV 78
Query: 74 QKK 76
+K+
Sbjct: 79 EKE 81
>gi|260427296|ref|ZP_05781275.1| protein smf [Citreicella sp. SE45]
gi|260421788|gb|EEX15039.1| protein smf [Citreicella sp. SE45]
Length = 398
Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
++D + +WLRL+RS + PAT +++ G+A AL+ +P++A V
Sbjct: 19 SEDDRFAWLRLLRSRRVGPATFWRLLSEHGTAVAALDALPQVAAAAGV 66
>gi|296283690|ref|ZP_06861688.1| DNA processing chain A [Citromicrobium bathyomarinum JL354]
Length = 363
Score = 66.6 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+L+ + + +RL+RS I P + ++ +GS E A+E +P +A++G
Sbjct: 3 ALSQAEAFARIRLLRSPRIGPVSFAQLLARYGSGEAAVEALPGIAKKGG 51
>gi|189183183|ref|YP_001936968.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
gi|189179954|dbj|BAG39734.1| DNA processing protein Smf [Orientia tsutsugamushi str. Ikeda]
Length = 386
Score = 66.2 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 34/62 (54%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
DD+ I LRL RS+N+ P T ++I FGSA+ AL+ + + + +G + +
Sbjct: 15 DDETIYTLRLARSENVGPKTFFELIRLFGSAKVALQNVADFSLKGGKRKPIKIYTNSEAL 74
Query: 75 KK 76
++
Sbjct: 75 QE 76
>gi|91205529|ref|YP_537884.1| putative DNA processing protein DprA [Rickettsia bellii RML369-C]
gi|91069073|gb|ABE04795.1| Putative DNA processing protein DprA [Rickettsia bellii RML369-C]
Length = 84
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQ 73
D + I+ LRLIRS+N+ P T +I FG A ++E I + + RG + F + +
Sbjct: 16 DLETINILRLIRSENVGPKTFYSLIKLFGDAATSIENIGDFSLRGGKSKPIKIFSKSDA 74
>gi|254420463|ref|ZP_05034187.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
gi|196186640|gb|EDX81616.1| DNA protecting protein DprA, putative [Brevundimonas sp. BAL3]
Length = 356
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+SL+ D++ + LRL R+D I P ++ +GSA + LE++P+L ++ +
Sbjct: 1 MSLSADERFARLRLARTDRIGPVAFSQLLGRYGSAIRVLEVLPDLVRKSGAAS 53
>gi|149200840|ref|ZP_01877815.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
gi|149145173|gb|EDM33199.1| DNA processing protein DprA, putative [Roseovarius sp. TM1035]
Length = 356
Score = 65.8 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+SWLRL+RS + PAT ++ GSA+ AL +PE+A+ V
Sbjct: 1 MSWLRLLRSRRVGPATFHRLLAEHGSAQAALAALPEVARAAGV 43
>gi|217979954|ref|YP_002364101.1| DNA protecting protein DprA [Methylocella silvestris BL2]
gi|217505330|gb|ACK52739.1| DNA protecting protein DprA [Methylocella silvestris BL2]
Length = 422
Score = 65.0 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+LT ++ ++LRL RS+ I P T ++ +GSA+ ALE +P + G
Sbjct: 2 TSAAALTPQERFAFLRLYRSETIGPRTFVALLARYGSAQAALEALPGVVASGKAGRPIAL 61
Query: 68 F 68
Sbjct: 62 A 62
>gi|126725956|ref|ZP_01741798.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
gi|126705160|gb|EBA04251.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2150]
Length = 390
Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+ D+ I WL+L RS + PAT ++ GSA AL +PE+A+ V
Sbjct: 16 SADETIRWLQLYRSRRVGPATFYRLMTEHGSAGAALLALPEVARTSGV 63
>gi|46204190|ref|ZP_00050367.2| COG0758: Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [Magnetospirillum
magnetotacticum MS-1]
Length = 182
Score = 63.1 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ LTD Q++ WLRLIR++ + P T R +IN FGSA AL+ +P+L +R A
Sbjct: 1 MQLTDAQRLDWLRLIRTEGVGPRTFRGLINRFGSAAAALDALPDLTKRAGKRA 53
>gi|148284625|ref|YP_001248715.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
gi|146740064|emb|CAM80189.1| DNA processing protein [Orientia tsutsugamushi str. Boryong]
Length = 386
Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
DD+ I LRL RS+N+ P T ++I FGSA+ AL+ + + +G + +
Sbjct: 15 DDETIYTLRLARSENVGPKTFFELIRLFGSAKIALQNVAYFSLKGGKRKPIKIYTNSEAL 74
Query: 75 KK 76
++
Sbjct: 75 QE 76
>gi|312115161|ref|YP_004012757.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
gi|311220290|gb|ADP71658.1| DNA protecting protein DprA [Rhodomicrobium vannielii ATCC 17100]
Length = 487
Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 6 PLKGG---VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVY 62
P + G S +K LRLIR+ +I T +I +FGSA A++ +PE + G+
Sbjct: 94 PPRAGKSSASTPSAEKRDRLRLIRTPHIGTVTFWQLIAHFGSAAAAIDALPEFVKHGSRV 153
Query: 63 AGKRA 67
+ K
Sbjct: 154 SPKSV 158
>gi|298291505|ref|YP_003693444.1| DNA protecting protein DprA [Starkeya novella DSM 506]
gi|296928016|gb|ADH88825.1| DNA protecting protein DprA [Starkeya novella DSM 506]
Length = 369
Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
GV L Q+ WLRLIR++N+ P R ++N FG A AL+ +P LA+RG R
Sbjct: 4 RGVQLDLGQRRDWLRLIRTENVGPRAFRSLVNRFGGAAAALDALPALARRGGGLIPPRI 62
>gi|197104784|ref|YP_002130161.1| dprA protein [Phenylobacterium zucineum HLK1]
gi|196478204|gb|ACG77732.1| dprA protein [Phenylobacterium zucineum HLK1]
Length = 362
Score = 61.6 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
+ LTD Q+ WLRL R++N+ P T +I FG AL +P+LA+RG R +
Sbjct: 3 LKLTDAQRRDWLRLARTENVGPVTFDQLIQRFGEPALALAALPDLARRGGRSH-IRIPTE 61
Query: 71 KNQQK 75
+
Sbjct: 62 AQAED 66
>gi|58616939|ref|YP_196138.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
gi|58416551|emb|CAI27664.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Gardel]
Length = 375
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR-AFVQ 70
L+ + +S LRLIR+ +I P+T +I + + LE +PEL ++ Y
Sbjct: 6 KLSYQELVSCLRLIRTQHIGPSTFSALIKIYKTCNNVLEALPELIKKSKAYDKINTICSI 65
Query: 71 KNQQKK 76
+ +++
Sbjct: 66 ETAEQE 71
>gi|57238947|ref|YP_180083.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|58578880|ref|YP_197092.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
gi|57161026|emb|CAH57932.1| putative DNA processing protein chain A [Ehrlichia ruminantium
str. Welgevonden]
gi|58417506|emb|CAI26710.1| Smf protein (DNA processing chain A) [Ehrlichia ruminantium str.
Welgevonden]
Length = 375
Score = 61.6 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR-AFVQ 70
L+ + +S LRLIR+ +I P+T +I + + LE +PEL ++ Y
Sbjct: 6 KLSYQELVSCLRLIRTQHIGPSTFSALIKIYKTCNNVLEALPELIKKSKAYDKINTICSI 65
Query: 71 KNQQKK 76
+ +++
Sbjct: 66 ETAEQE 71
>gi|329851389|ref|ZP_08266146.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
gi|328840235|gb|EGF89807.1| DNA protecting protein DprA [Asticcacaulis biprosthecum C19]
Length = 372
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+D ++I+ LRL R++ + P ++ FGSAE+AL+ +P L ++
Sbjct: 11 SDAERIARLRLARTNRVGPVNFASLMLRFGSAERALQELPNLVKQTG 57
>gi|126729116|ref|ZP_01744930.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
gi|126710106|gb|EBA09158.1| DNA processing protein DprA, putative [Sagittula stellata E-37]
Length = 372
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ WLRL+RS + AT ++ GSA ALE +PE+A+ V
Sbjct: 1 MDWLRLLRSRRVGVATFWRLLGEHGSARAALEALPEVARAAGVER 45
>gi|329114375|ref|ZP_08243137.1| Protein Smf [Acetobacter pomorum DM001]
gi|326696451|gb|EGE48130.1| Protein Smf [Acetobacter pomorum DM001]
Length = 412
Score = 61.2 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
+ LRL R++ + P T R +++ +GSA ALE +P L RG
Sbjct: 6 ACLRLARTEQVGPRTWRKLVDKYGSAAAALEALPYLPVRG 45
>gi|254294345|ref|YP_003060368.1| DNA protecting protein DprA [Hirschia baltica ATCC 49814]
gi|254042876|gb|ACT59671.1| DNA protecting protein DprA [Hirschia baltica ATCC 49814]
Length = 373
Score = 60.8 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYF-GSAEQALEMIPELAQRGAVYAGKRAFVQ 70
+L+D ++ L+L+R+ N+ P T +++ F G + L+ +P L R + +
Sbjct: 7 TLSDGERAKRLQLLRTPNVGPMTYAQLMSRFSGDIDAVLDALPNLTTRAGKHRDFKLPSL 66
Query: 71 KNQQKK 76
+++
Sbjct: 67 SIIERE 72
>gi|258541853|ref|YP_003187286.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256632931|dbj|BAH98906.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-01]
gi|256635988|dbj|BAI01957.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-03]
gi|256639043|dbj|BAI05005.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-07]
gi|256642097|dbj|BAI08052.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-22]
gi|256645152|dbj|BAI11100.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-26]
gi|256648207|dbj|BAI14148.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-32]
gi|256651260|dbj|BAI17194.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654251|dbj|BAI20178.1| DNA processing chain A SMF [Acetobacter pasteurianus IFO 3283-12]
Length = 208
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 27/40 (67%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
+ LRL R++ + P T R +++ +GSA +ALE +P L RG
Sbjct: 6 ACLRLARTEQVGPRTWRKLVDKYGSAAEALEALPYLPVRG 45
>gi|84685604|ref|ZP_01013501.1| DNA processing protein DprA, putative [Maritimibacter
alkaliphilus HTCC2654]
gi|84666270|gb|EAQ12743.1| DNA processing protein DprA, putative [Rhodobacterales bacterium
HTCC2654]
Length = 375
Score = 60.4 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
++WLRL+RS + T ++ GSA+ AL+ +PE+A+ V
Sbjct: 1 MAWLRLLRSRRVGVTTFFRLMGEHGSAQAALDALPEVAKTAGV 43
>gi|4511994|gb|AAD21554.1| DNA processing chain A [Zymomonas mobilis subsp. mobilis ZM4]
Length = 385
Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG + +
Sbjct: 7 PSMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGG-GQAPKIASE 65
Query: 71 KNQQKK 76
K ++
Sbjct: 66 KTVNEE 71
>gi|260752380|ref|YP_003225273.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|258551743|gb|ACV74689.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
Length = 385
Score = 60.4 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG + +
Sbjct: 7 PSMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGG-GQAPKIASE 65
Query: 71 KNQQKK 76
K ++
Sbjct: 66 KTVNEE 71
>gi|56552090|ref|YP_162929.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ZM4]
gi|56543664|gb|AAV89818.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ZM4]
Length = 385
Score = 60.0 bits (144), Expect = 9e-08, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG + +
Sbjct: 7 PSMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGG-GQAPKIASE 65
Query: 71 KNQQKK 76
K ++
Sbjct: 66 KTVNEE 71
>gi|241762041|ref|ZP_04760125.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|241373507|gb|EER63094.1| DNA protecting protein DprA [Zymomonas mobilis subsp. mobilis
ATCC 10988]
Length = 385
Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQ 70
S+T++ + LRLIR+ I T +I + S ++AL+ +P LA+RG + +
Sbjct: 7 PSMTEEDYRASLRLIRTPRIGAVTYNRLITRYSSPQEALKAVPLLAKRGG-GQAPKIASE 65
Query: 71 KNQQKK 76
K ++
Sbjct: 66 KTVNEE 71
>gi|296535601|ref|ZP_06897782.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
gi|296264117|gb|EFH10561.1| DNA protecting protein DprA [Roseomonas cervicalis ATCC 49957]
Length = 364
Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
+ +S LRL R++ I P T R ++ G+AE AL+ +P L QRG
Sbjct: 1 MKPRAALSLLRLARTEGIGPLTFRRLLERHGTAEAALDALPSLPQRG 47
>gi|170746908|ref|YP_001753168.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
gi|170653430|gb|ACB22485.1| DNA protecting protein DprA [Methylobacterium radiotolerans JCM
2831]
Length = 403
Score = 58.5 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGS 44
+ LT+ Q++ WLRLIR++ + P T R ++N FG
Sbjct: 1 MQLTEAQRLDWLRLIRTEGVGPRTFRRLVNRFGG 34
>gi|326403290|ref|YP_004283371.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
gi|325050151|dbj|BAJ80489.1| putative DNA processing protein [Acidiphilium multivorum AIU301]
Length = 373
Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQKK 76
LRLIR++ + P T R + F S +AL+ +P LA++ R +++
Sbjct: 8 LRLIRTEGVGPRTFRRLRERFASPGEALDALPALARQVGRRGNLRIPPPAEIRRE 62
>gi|148259743|ref|YP_001233870.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
gi|146401424|gb|ABQ29951.1| DNA protecting protein DprA [Acidiphilium cryptum JF-5]
Length = 373
Score = 57.7 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQKK 76
LRLIR++ + P T R + F S +AL+ +P LA++ R +++
Sbjct: 8 LRLIRTEGVGPRTFRRLRERFASPGEALDALPALARQVGRRGNLRIPPPAEIRRE 62
>gi|88657722|ref|YP_507678.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
gi|88599179|gb|ABD44648.1| putative DNA processing protein DprA [Ehrlichia chaffeensis str.
Arkansas]
Length = 375
Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKR-AFVQ 70
L+ + IS LR+IR+ NI P+T +I + + + LE++P L ++ +
Sbjct: 6 ELSHQELISCLRVIRTPNIGPSTFHALIKLYKTCQHILEVLPNLIKKSKINNKIHNICSI 65
Query: 71 KNQQKK 76
+ + +
Sbjct: 66 EAAELE 71
>gi|73666848|ref|YP_302864.1| SMF protein [Ehrlichia canis str. Jake]
gi|72393989|gb|AAZ68266.1| SMF protein [Ehrlichia canis str. Jake]
Length = 374
Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 8 KGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGK-R 66
K L+ + IS +RLIR+ NI P+T ++ + + + LE++P L ++
Sbjct: 2 KTKKELSYQEFISCIRLIRTPNIGPSTFHALVKLYKTCQHTLEVLPNLIKKSNTNDKLYN 61
Query: 67 AFVQKNQQKK 76
+ + +
Sbjct: 62 ICSIETAELE 71
>gi|254463787|ref|ZP_05077198.1| DNA protecting protein DprA [Rhodobacterales bacterium Y4I]
gi|206684695|gb|EDZ45177.1| DNA protecting protein DprA [Rhodobacterales bacterium Y4I]
Length = 365
Score = 56.2 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+RS + P T ++ +GSA+ AL+ +PE+A+ +
Sbjct: 1 MRSKRVGPVTFHRLLAEYGSAQNALDALPEVARSAGI 37
>gi|254511723|ref|ZP_05123790.1| DNA protecting protein DprA [Rhodobacteraceae bacterium KLH11]
gi|221535434|gb|EEE38422.1| DNA protecting protein DprA [Rhodobacteraceae bacterium KLH11]
Length = 351
Score = 55.4 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+RS + PAT R ++ GSA+ AL +PE+A+ +
Sbjct: 1 MRSRKVGPATFRRLLREHGSAQNALAALPEMARAAGI 37
>gi|325267229|ref|ZP_08133892.1| DNA protecting protein DprA [Kingella denitrificans ATCC 33394]
gi|324981290|gb|EGC16939.1| DNA protecting protein DprA [Kingella denitrificans ATCC 33394]
Length = 397
Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 31/63 (49%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+ ++ +W++L + I + +I + GSAE+AL+ L + Y + A +
Sbjct: 1 MTETERFAWVQLAFTPYIGAESFTQLIEHCGSAEEALKAPAALVAQLGRYGKQAAAAWHD 60
Query: 73 QQK 75
K
Sbjct: 61 TDK 63
>gi|114327469|ref|YP_744626.1| DNA processing protein [Granulibacter bethesdensis CGDNIH1]
gi|114315643|gb|ABI61703.1| DNA processing protein [Granulibacter bethesdensis CGDNIH1]
Length = 378
Score = 54.6 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 27/62 (43%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T + LRL R++ I P +I F SA AL +P L + ++ ++
Sbjct: 1 MTPHDALDRLRLARTEGIGPTAYGRLITRFRSAGAALRALPGLPRAASLIIPSEEAIRAE 60
Query: 73 QQ 74
+
Sbjct: 61 ME 62
>gi|294678614|ref|YP_003579229.1| DNA protecting protein DprA [Rhodobacter capsulatus SB 1003]
gi|294477434|gb|ADE86822.1| DNA protecting protein DprA [Rhodobacter capsulatus SB 1003]
Length = 383
Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVY 62
++ ++S+LRL RS + T ++ GSA AL+ +P +A+
Sbjct: 18 EEDELSFLRLARSRRVGATTFHRLLKDHGSAAAALDALPGIARAAGSA 65
>gi|157827245|ref|YP_001496309.1| putative DNA processing protein DprA [Rickettsia bellii OSU
85-389]
gi|157802549|gb|ABV79272.1| Putative DNA processing protein DprA [Rickettsia bellii OSU
85-389]
Length = 66
Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
D + I+ LRLIRS+N+ P T +I F A ++E I + + RG
Sbjct: 16 DLETINILRLIRSENVGPKTFYSLIKLFSDAATSIENIGDFSLRG 60
>gi|325133183|gb|EGC55854.1| putative DNA processing protein DprA [Neisseria meningitidis
M6190]
Length = 395
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++++FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLHHFGSAQNALSA 39
>gi|325138795|gb|EGC61347.1| putative DNA processing protein DprA [Neisseria meningitidis
ES14902]
Length = 395
Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++++FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLHHFGSAQNALSA 39
>gi|261378982|ref|ZP_05983555.1| putative DNA processing protein DprA [Neisseria cinerea ATCC
14685]
gi|269144597|gb|EEZ71015.1| putative DNA processing protein DprA [Neisseria cinerea ATCC
14685]
Length = 397
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T++++ +WL+L + I + ++++FGSA+ AL
Sbjct: 1 MTENERFAWLQLAFTPYIGAESFLLLLHHFGSAQNALSA 39
>gi|254796757|ref|YP_003081593.1| DNA processing chain A [Neorickettsia risticii str. Illinois]
gi|254590002|gb|ACT69364.1| DNA processing chain A [Neorickettsia risticii str. Illinois]
Length = 375
Score = 50.4 bits (119), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
L+ + + WL+L R+ + T + +I+ +G+AE AL + + QR R F + +
Sbjct: 6 LSKSELLFWLQLSRT--VGEVTFQSLISLYGTAENALGQLSTIQQR---TKKTRPFSKTD 60
Query: 73 QQKK 76
K+
Sbjct: 61 ALKE 64
>gi|325197405|gb|ADY92861.1| putative DNA processing protein DprA [Neisseria meningitidis
G2136]
Length = 395
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA+ AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQK 75
+K
Sbjct: 60 AEK 62
>gi|254671143|emb|CBA08189.1| DNA processing chain A [Neisseria meningitidis alpha153]
Length = 395
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA+ AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQK 75
+K
Sbjct: 60 AEK 62
>gi|88608661|ref|YP_506277.1| putative DNA processing protein DprA [Neorickettsia sennetsu str.
Miyayama]
gi|88600830|gb|ABD46298.1| putative DNA processing protein DprA [Neorickettsia sennetsu str.
Miyayama]
Length = 378
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
L+ + + WL+L R+ + T + +I+ +G+AE AL + + QR + F + +
Sbjct: 6 LSKSELLFWLQLSRT--VGEVTFQSLISLYGTAENALGQLSTIQQR---TKKIKPFSKTD 60
Query: 73 QQKK 76
K+
Sbjct: 61 ALKE 64
>gi|325135225|gb|EGC57850.1| putative DNA processing protein DprA [Neisseria meningitidis
M13399]
Length = 397
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQKK 76
+K+
Sbjct: 60 AEKR 63
>gi|304388917|ref|ZP_07370964.1| DNA protecting protein DprA [Neisseria meningitidis ATCC 13091]
gi|304337051|gb|EFM03238.1| DNA protecting protein DprA [Neisseria meningitidis ATCC 13091]
Length = 395
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA 39
>gi|325145438|gb|EGC67714.1| putative DNA processing protein DprA [Neisseria meningitidis
M01-240013]
gi|325205209|gb|ADZ00662.1| putative DNA processing protein DprA [Neisseria meningitidis
M04-240196]
Length = 397
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQKK 76
+K+
Sbjct: 60 AEKR 63
>gi|254672820|emb|CBA06971.1| DNA processing chain A [Neisseria meningitidis alpha275]
Length = 395
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQK 75
+K
Sbjct: 60 AEK 62
>gi|308388334|gb|ADO30654.1| SMF-family protein [Neisseria meningitidis alpha710]
gi|325131151|gb|EGC53872.1| putative DNA processing protein DprA [Neisseria meningitidis
OX99.30304]
gi|325137175|gb|EGC59770.1| putative DNA processing protein DprA [Neisseria meningitidis
M0579]
gi|325203049|gb|ADY98503.1| putative DNA processing protein DprA [Neisseria meningitidis
M01-240149]
gi|325207153|gb|ADZ02605.1| putative DNA processing protein DprA [Neisseria meningitidis
NZ-05/33]
Length = 395
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQKK 76
+K+
Sbjct: 60 AEKR 63
>gi|325203235|gb|ADY98688.1| putative DNA processing protein DprA [Neisseria meningitidis
M01-240355]
Length = 395
Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQK 75
+K
Sbjct: 60 AEK 62
>gi|15676044|ref|NP_273174.1| DNA processing chain A [Neisseria meningitidis MC58]
gi|7225332|gb|AAF40575.1| DNA processing chain A [Neisseria meningitidis MC58]
gi|316985962|gb|EFV64901.1| DNA protecting protein DprA [Neisseria meningitidis H44/76]
gi|325141261|gb|EGC63760.1| putative DNA processing protein DprA [Neisseria meningitidis
CU385]
gi|325199330|gb|ADY94785.1| putative DNA processing protein DprA [Neisseria meningitidis
H44/76]
Length = 397
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA 39
>gi|319411401|emb|CBY91812.1| Smf protein (DNA processing chain A) [Neisseria meningitidis WUE
2594]
Length = 395
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA 39
>gi|218767196|ref|YP_002341708.1| DprA homolog [Neisseria meningitidis Z2491]
gi|121051204|emb|CAM07475.1| DprA homolog [Neisseria meningitidis Z2491]
Length = 395
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA 39
>gi|261391654|emb|CAX49102.1| Smf protein (DNA processing chain A) [Neisseria meningitidis
8013]
Length = 395
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA 39
>gi|161870938|ref|YP_001600118.1| DNA processing chain A [Neisseria meningitidis 053442]
gi|161596491|gb|ABX74151.1| DNA processing chain A [Neisseria meningitidis 053442]
Length = 395
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRRFGSAQNALSA 39
>gi|313667412|ref|YP_004047696.1| SMF-family protein [Neisseria lactamica ST-640]
gi|313004874|emb|CBN86300.1| SMF-family protein [Neisseria lactamica 020-06]
Length = 395
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSAQNALSA 39
>gi|254805838|ref|YP_003084059.1| DNA processing protein DprA [Neisseria meningitidis alpha14]
gi|254669380|emb|CBA08516.1| DNA processing protein DprA [Neisseria meningitidis alpha14]
Length = 395
Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQK 75
+K
Sbjct: 60 AEK 62
>gi|261400041|ref|ZP_05986166.1| putative DNA processing protein DprA [Neisseria lactamica ATCC
23970]
gi|269210264|gb|EEZ76719.1| putative DNA processing protein DprA [Neisseria lactamica ATCC
23970]
Length = 397
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA 39
>gi|309378540|emb|CBX22812.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 397
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA 39
>gi|83950056|ref|ZP_00958789.1| DNA processing protein DprA, putative [Roseovarius nubinhibens
ISM]
gi|83837955|gb|EAP77251.1| DNA processing protein DprA, putative [Roseovarius nubinhibens
ISM]
Length = 362
Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+RS + T ++ FG+AE AL +P++A+ V
Sbjct: 1 MRSRRVGITTFYRLLAKFGTAENALAALPDIARAAGV 37
>gi|296315164|ref|ZP_06865105.1| putative DNA processing protein DprA [Neisseria polysaccharea
ATCC 43768]
gi|296837973|gb|EFH21911.1| putative DNA processing protein DprA [Neisseria polysaccharea
ATCC 43768]
Length = 397
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA 39
>gi|121633994|ref|YP_974239.1| SMF-family protein [Neisseria meningitidis FAM18]
gi|120865700|emb|CAM09427.1| SMF-family protein [Neisseria meningitidis FAM18]
Length = 397
Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+D++ +WL+L + I + ++ FGSA AL P AV + A +N
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA-PAEQVAPAVRHKQAAEAWRN 59
Query: 73 QQKK 76
+K+
Sbjct: 60 AEKR 63
>gi|325129152|gb|EGC52000.1| putative DNA processing protein DprA [Neisseria meningitidis
N1568]
Length = 397
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLLRRFGSASNALSA 39
>gi|261380552|ref|ZP_05985125.1| DNA processing protein DprA [Neisseria subflava NJ9703]
gi|284796520|gb|EFC51867.1| DNA processing protein DprA [Neisseria subflava NJ9703]
Length = 396
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPE---------LAQRGAVYA 63
+T++++ +WL+L + I + ++ FGSA+ AL + A A
Sbjct: 1 MTENERFAWLQLAFTPYIGAESFLVLLQQFGSAQAALNAPADKIAALVRHKQAAESWRNA 60
Query: 64 GKRAFVQKNQQ 74
KRA Q++ +
Sbjct: 61 DKRALAQQSAE 71
>gi|241760431|ref|ZP_04758525.1| DNA protecting protein DprA [Neisseria flavescens SK114]
gi|241319100|gb|EER55593.1| DNA protecting protein DprA [Neisseria flavescens SK114]
Length = 396
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPE---------LAQRGAVYA 63
+T++++ +WL+L + I + ++ FGSA+ AL + A A
Sbjct: 1 MTENERFAWLQLAFTPYIGAESFLVLLQQFGSAQAALNAPADKIAALVRHKQAAESWRNA 60
Query: 64 GKRAFVQKNQQ 74
KRA Q++ +
Sbjct: 61 DKRALAQQSAE 71
>gi|319639529|ref|ZP_07994276.1| SMF-family protein [Neisseria mucosa C102]
gi|317399100|gb|EFV79774.1| SMF-family protein [Neisseria mucosa C102]
Length = 396
Score = 48.5 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPE---------LAQRGAVYA 63
+T++++ +WL+L + I + ++ FGSA+ AL + A A
Sbjct: 1 MTENERFAWLQLAFTPYIGAESFLVLLQQFGSAQAALSAPADKIAALVRHKQAAESWRNA 60
Query: 64 GKRAFVQKNQQ 74
KRA Q++ +
Sbjct: 61 DKRALAQQSAE 71
>gi|114570266|ref|YP_756946.1| DNA protecting protein DprA [Maricaulis maris MCS10]
gi|114340728|gb|ABI66008.1| DNA protecting protein DprA [Maricaulis maris MCS10]
Length = 387
Score = 48.1 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
+ +++ WLRL R+ + I ++G+A A++ +P A+
Sbjct: 7 SHTERVMWLRLARTRGLGAIGFARAIAHYGNAADAIDDLPARARSAG 53
>gi|163733552|ref|ZP_02140995.1| DNA processing protein DprA, putative [Roseobacter litoralis Och
149]
gi|161393340|gb|EDQ17666.1| DNA processing protein DprA, putative [Roseobacter litoralis Och
149]
Length = 358
Score = 48.1 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+RS + AT + ++ G+A+ AL +PE+A+ V
Sbjct: 1 MRSRRVGIATYKRLLTEHGTAQNALAALPEVARAAGVEK 39
>gi|240116726|ref|ZP_04730788.1| DprA [Neisseria gonorrhoeae PID18]
gi|268602397|ref|ZP_06136564.1| DNA processing chain A [Neisseria gonorrhoeae PID18]
gi|268586528|gb|EEZ51204.1| DNA processing chain A [Neisseria gonorrhoeae PID18]
Length = 398
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 4 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 42
>gi|294789444|ref|ZP_06754681.1| putative DNA processing protein DprA [Simonsiella muelleri ATCC
29453]
gi|294482657|gb|EFG30347.1| putative DNA processing protein DprA [Simonsiella muelleri ATCC
29453]
Length = 421
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+TD + +W++L + I + +I +FG A+ AL
Sbjct: 1 MTDSDRYAWIQLALTPYIGADSFLLLIQHFGDAQAALRA 39
>gi|260439513|ref|ZP_05793329.1| DprA [Neisseria gonorrhoeae DGI2]
gi|291042750|ref|ZP_06568491.1| DNA protecting protein DprA [Neisseria gonorrhoeae DGI2]
gi|291013184|gb|EFE05150.1| DNA protecting protein DprA [Neisseria gonorrhoeae DGI2]
Length = 395
Score = 47.7 bits (112), Expect = 5e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 39
>gi|240118948|ref|ZP_04733010.1| DprA [Neisseria gonorrhoeae PID1]
Length = 398
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 4 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 42
>gi|240124486|ref|ZP_04737442.1| DprA [Neisseria gonorrhoeae PID332]
gi|317165352|gb|ADV08893.1| DprA [Neisseria gonorrhoeae TCDC-NG08107]
Length = 398
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 4 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 42
>gi|194099892|ref|YP_002003029.1| DprA [Neisseria gonorrhoeae NCCP11945]
gi|240015122|ref|ZP_04722035.1| DprA [Neisseria gonorrhoeae DGI18]
gi|240017572|ref|ZP_04724112.1| DprA [Neisseria gonorrhoeae FA6140]
gi|240113990|ref|ZP_04728480.1| DprA [Neisseria gonorrhoeae MS11]
gi|240122193|ref|ZP_04735155.1| DprA [Neisseria gonorrhoeae PID24-1]
gi|268600055|ref|ZP_06134222.1| DNA processing chain A [Neisseria gonorrhoeae MS11]
gi|193935182|gb|ACF31006.1| DprA [Neisseria gonorrhoeae NCCP11945]
gi|268584186|gb|EEZ48862.1| DNA processing chain A [Neisseria gonorrhoeae MS11]
Length = 398
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 4 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 42
>gi|240129161|ref|ZP_04741822.1| DprA [Neisseria gonorrhoeae SK-93-1035]
gi|268687544|ref|ZP_06154406.1| DNA processing chain A [Neisseria gonorrhoeae SK-93-1035]
gi|268627828|gb|EEZ60228.1| DNA processing chain A [Neisseria gonorrhoeae SK-93-1035]
Length = 398
Score = 47.7 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 4 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 42
>gi|240124645|ref|ZP_04737531.1| DprA [Neisseria gonorrhoeae SK-92-679]
gi|268683219|ref|ZP_06150081.1| DNA processing chain A [Neisseria gonorrhoeae SK-92-679]
gi|268623503|gb|EEZ55903.1| DNA processing chain A [Neisseria gonorrhoeae SK-92-679]
Length = 397
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 4 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 42
>gi|239997897|ref|ZP_04717821.1| DprA [Neisseria gonorrhoeae 35/02]
Length = 398
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 4 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 42
>gi|268683117|ref|ZP_06149979.1| DNA processing chain A [Neisseria gonorrhoeae PID332]
gi|268623401|gb|EEZ55801.1| DNA processing chain A [Neisseria gonorrhoeae PID332]
Length = 395
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 39
>gi|240081714|ref|ZP_04726257.1| DprA [Neisseria gonorrhoeae FA19]
gi|268597812|ref|ZP_06131979.1| DNA processing chain A [Neisseria gonorrhoeae FA19]
gi|268604659|ref|ZP_06138826.1| DNA processing chain A [Neisseria gonorrhoeae PID1]
gi|268551600|gb|EEZ46619.1| DNA processing chain A [Neisseria gonorrhoeae FA19]
gi|268588790|gb|EEZ53466.1| DNA processing chain A [Neisseria gonorrhoeae PID1]
Length = 395
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 39
>gi|59802185|ref|YP_208897.1| hypothetical protein NGO1865 [Neisseria gonorrhoeae FA 1090]
gi|293398230|ref|ZP_06642435.1| DNA processing protein [Neisseria gonorrhoeae F62]
gi|59719080|gb|AAW90485.1| putative DNA processing chain A [Neisseria gonorrhoeae FA 1090]
gi|291611493|gb|EFF40563.1| DNA processing protein [Neisseria gonorrhoeae F62]
Length = 395
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 39
>gi|254494747|ref|ZP_05107918.1| DNA processing chain A [Neisseria gonorrhoeae 1291]
gi|226513787|gb|EEH63132.1| DNA processing chain A [Neisseria gonorrhoeae 1291]
Length = 395
Score = 47.3 bits (111), Expect = 6e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 39
>gi|268593749|ref|ZP_06127916.1| DNA processing chain A [Neisseria gonorrhoeae 35/02]
gi|268547138|gb|EEZ42556.1| DNA processing chain A [Neisseria gonorrhoeae 35/02]
Length = 395
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T+D++ +WL+L + I + ++ FGSA+ AL
Sbjct: 1 MTEDERFAWLQLAFTPYIGAESFLLLMRSFGSAQNALSA 39
>gi|148556726|ref|YP_001264308.1| DNA protecting protein DprA [Sphingomonas wittichii RW1]
gi|148501916|gb|ABQ70170.1| DNA protecting protein DprA [Sphingomonas wittichii RW1]
Length = 592
Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
G L +++++ LRLIR+ I P +I FGS +AL +P LA+RG
Sbjct: 227 GTADLDGNERLARLRLIRTPRIGPVAYSQLIRRFGSGVEALAALPALARRGG 278
>gi|126461618|ref|YP_001042732.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17029]
gi|126103282|gb|ABN75960.1| DNA protecting protein DprA [Rhodobacter sphaeroides ATCC 17029]
Length = 372
Score = 46.9 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+ +++ LRLIRS + PAT R ++ G+A AL +P +A +
Sbjct: 13 AEAERLDRLRLIRSRRVGPATWRRLMAEHGTAAGALAALPGVAAVAGI 60
>gi|298370610|ref|ZP_06981925.1| smf protein [Neisseria sp. oral taxon 014 str. F0314]
gi|298281220|gb|EFI22710.1| smf protein [Neisseria sp. oral taxon 014 str. F0314]
Length = 393
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+ + ++ +WL+L + + + ++ YFGSA+ AL+
Sbjct: 1 MNETERFAWLQLAFTPYVGAESFLILLQYFGSAQAALDA 39
>gi|255263932|ref|ZP_05343274.1| DNA protecting protein DprA [Thalassiobium sp. R2A62]
gi|255106267|gb|EET48941.1| DNA protecting protein DprA [Thalassiobium sp. R2A62]
Length = 197
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+RS + +T R ++ SA AL +P++A+ V
Sbjct: 1 MRSRRVGISTFRHLLAEHCSASAALIALPDVAKSAGV 37
>gi|56416598|ref|YP_153672.1| DNA processing protein, chain A [Anaplasma marginale str. St.
Maries]
gi|222474964|ref|YP_002563379.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Florida]
gi|56387830|gb|AAV86417.1| DNA processing protein, chain A [Anaplasma marginale str. St.
Maries]
gi|222419100|gb|ACM49123.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Florida]
Length = 377
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + + D ++ +R++R+ I P + +I + + E AL+ + G
Sbjct: 1 MDPSTNITSAAVIRDC-LVACIRIMRTAKIGPIAFQKLIKLYKTPELALDAL----AHGE 55
Query: 61 VYAGKRAFVQKNQQKK 76
+ R + + +K+
Sbjct: 56 LGNVGRICPEDDAEKE 71
>gi|296117478|ref|ZP_06836065.1| putative DNA processing chain A [Gluconacetobacter hansenii ATCC
23769]
gi|295975999|gb|EFG82790.1| putative DNA processing chain A [Gluconacetobacter hansenii ATCC
23769]
Length = 375
Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMI 52
+ LRL R+ I P + +I +G A AL+M+
Sbjct: 11 ACLRLARTRGIGPVSYHRLIRKYGDAGAALDML 43
>gi|225075474|ref|ZP_03718673.1| hypothetical protein NEIFLAOT_00479 [Neisseria flavescens
NRL30031/H210]
gi|224953193|gb|EEG34402.1| hypothetical protein NEIFLAOT_00479 [Neisseria flavescens
NRL30031/H210]
Length = 396
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPE---------LAQRGAVYA 63
+T++++ +WL+L + I + ++ FG+A+ AL + A A
Sbjct: 1 MTENERFAWLQLAFTPYIGAESFLVLLQQFGNAQAALNAPADRIAALVRHKQAAESWRNA 60
Query: 64 GKRAFVQKNQQ 74
KRA Q++ +
Sbjct: 61 DKRALAQQSAE 71
>gi|297717816|gb|ADI50051.1| putative DNA processing protein DprA [Candidatus Odyssella
thessalonicensis L13]
Length = 361
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMI 52
+ D ISWL+L N+ P T ++ FG E+AL +
Sbjct: 1 MNDKDLISWLKLAYCKNVGPITFWQALSRFGCCEEALAWL 40
>gi|269958987|ref|YP_003328776.1| putativeDNA recombination-mediator protein A [Anaplasma centrale
str. Israel]
gi|269848818|gb|ACZ49462.1| putativeDNA recombination-mediator protein A [Anaplasma centrale
str. Israel]
Length = 378
Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 13/76 (17%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGA 60
M + + D ++ +R++R+ I P + +I + + E AL+ + G
Sbjct: 1 MDPSTNITSAAVIRDC-LVACIRIMRTAKIGPIAFQKLIKLYKTPELALDAL----AHGE 55
Query: 61 VYAGKRAFVQKNQQKK 76
+ R + + +K+
Sbjct: 56 LGNVGRICPEDDAEKE 71
>gi|221638586|ref|YP_002524848.1| DNA protecting protein DprA [Rhodobacter sphaeroides KD131]
gi|221159367|gb|ACM00347.1| DNA protecting protein DprA [Rhodobacter sphaeroides KD131]
Length = 372
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGS 44
+ +++ LRLIRS + PAT R ++ G+
Sbjct: 13 AEAERLDRLRLIRSRRVGPATWRRLMAEHGT 43
>gi|238021547|ref|ZP_04601973.1| hypothetical protein GCWU000324_01447 [Kingella oralis ATCC
51147]
gi|237866161|gb|EEP67203.1| hypothetical protein GCWU000324_01447 [Kingella oralis ATCC
51147]
Length = 389
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+T+ ++ +WL+L + +I + ++ +G+A AL+ E+ + A
Sbjct: 1 MTESERQAWLQLAFTPHIGAESFALLLQMYGTASAALQAPAEVIAQLGKQA 51
>gi|255067823|ref|ZP_05319678.1| DNA processing protein DprA [Neisseria sicca ATCC 29256]
gi|255047914|gb|EET43378.1| DNA processing protein DprA [Neisseria sicca ATCC 29256]
Length = 403
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T++ +++WL+L + + ++ FGSA+ AL+
Sbjct: 1 MTENDRLAWLQLAFTPYVGAEGFLLLLQRFGSAKAALDA 39
>gi|332967865|gb|EGK06961.1| SMF-family protein [Kingella kingae ATCC 23330]
Length = 401
Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T+ ++ +W+ L + I + +I + GSA +AL L + A + + A +
Sbjct: 8 VTESERCAWIELALTPYIGAESFLRLIEHCGSAAEALRAPVNLVAQLAHHGKQAAAAWTD 67
Query: 73 QQK 75
+ K
Sbjct: 68 KSK 70
>gi|288575792|ref|ZP_06393972.1| DNA protecting protein DprA [Neisseria mucosa ATCC 25996]
gi|288566999|gb|EFC88559.1| DNA protecting protein DprA [Neisseria mucosa ATCC 25996]
Length = 355
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+T++ +++WL+L + + ++ FGSA+ AL+
Sbjct: 1 MTENDRLAWLQLAFTPYVGAEGFLLLLQRFGSAKAALDA 39
>gi|254463451|ref|ZP_05076867.1| DNA protecting protein DprA [Rhodobacterales bacterium HTCC2083]
gi|206680040|gb|EDZ44527.1| DNA protecting protein DprA [Rhodobacteraceae bacterium HTCC2083]
Length = 356
Score = 45.8 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+RS + AT ++ +GSA ALE +P++A +
Sbjct: 1 MRSRRVGIATFYRFLSEYGSACAALEALPKIASNAGLSK 39
>gi|84501686|ref|ZP_00999858.1| DNA processing protein DprA, putative [Oceanicola batsensis
HTCC2597]
gi|84390307|gb|EAQ02866.1| DNA processing protein DprA, putative [Oceanicola batsensis
HTCC2597]
Length = 372
Score = 44.6 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+RS + +T +++ G+A AL +PE+A V
Sbjct: 1 MRSRRVGISTFYRLLSEHGTASAALVALPEIAAAAGV 37
>gi|218461880|ref|ZP_03501971.1| DNA processing chain A protein [Rhizobium etli Kim 5]
Length = 31
Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 1 MKKMNPLKGGVSLTDDQKISWLRLIRSDNIS 31
M + G L++ Q+I+WLRLIRSDN+
Sbjct: 1 MDAPSAGSKGTVLSERQRIAWLRLIRSDNVG 31
>gi|304321726|ref|YP_003855369.1| DNA processing protein [Parvularcula bermudensis HTCC2503]
gi|303300628|gb|ADM10227.1| DNA processing protein [Parvularcula bermudensis HTCC2503]
Length = 371
Score = 44.2 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP--ELAQRG 59
D+ ++ LRL R+ + P T R +I+ FGSA + + E+ ++G
Sbjct: 8 DETLAALRLARTVGLGPLTFRRLIDRFGSAIAVIRGLDSGEIPRKG 53
>gi|330994161|ref|ZP_08318089.1| Protein smf [Gluconacetobacter sp. SXCC-1]
gi|329758628|gb|EGG75144.1| Protein smf [Gluconacetobacter sp. SXCC-1]
Length = 390
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGSAEQALEMI 52
++ LRL R+D I P + ++ GS + AL ++
Sbjct: 10 LACLRLARTDGIGPVSYHRLVRTHGSVQAALALL 43
>gi|126737264|ref|ZP_01752999.1| DNA processing protein DprA, putative [Roseobacter sp. SK209-2-6]
gi|126721849|gb|EBA18552.1| DNA processing protein DprA, putative [Roseobacter sp. SK209-2-6]
Length = 423
Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 28 DNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
I P R +I +GSA+ L+ +P++A +
Sbjct: 31 RRIGPVNFRRLIGQYGSAQNVLDALPKMADAAGIAG 66
>gi|221069821|ref|ZP_03545926.1| DNA protecting protein DprA [Comamonas testosteroni KF-1]
gi|220714844|gb|EED70212.1| DNA protecting protein DprA [Comamonas testosteroni KF-1]
Length = 397
Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
D + ++WLRL+ + + T R ++ GSAE + P + A A +A +
Sbjct: 15 DAETLAWLRLLLTPGLGRTTARRLLTRAGSAEAVWRLPPSIWAECASQAQIKAGSEPPAD 74
Query: 75 KK 76
+
Sbjct: 75 WE 76
>gi|83943948|ref|ZP_00956405.1| DNA processing protein DprA, putative [Sulfitobacter sp. EE-36]
gi|83845195|gb|EAP83075.1| DNA processing protein DprA, putative [Sulfitobacter sp. EE-36]
Length = 365
Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 30 ISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+ T M+ +G+A ALE +P++A+ V
Sbjct: 22 VGVVTYYRMLRDYGTARAALEALPDVARAAGV 53
>gi|110679407|ref|YP_682414.1| DNA processing protein DprA, putative [Roseobacter denitrificans
OCh 114]
gi|109455523|gb|ABG31728.1| DNA processing protein DprA, putative [Roseobacter denitrificans
OCh 114]
Length = 389
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 5 NPLKGGVSL---TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
NP L ++D++ S LRL+RS + T + ++ G+A+ AL +PE+A+ V
Sbjct: 7 NPSSTHPPLPPTSEDEQFSRLRLLRSRRVGITTYKRLLTEHGTAQNALAALPEVARAAGV 66
Query: 62 YA 63
Sbjct: 67 EK 68
>gi|77462726|ref|YP_352230.1| hypothetical protein RSP_2177 [Rhodobacter sphaeroides 2.4.1]
gi|77387144|gb|ABA78329.1| hypothetical protein RSP_2177 [Rhodobacter sphaeroides 2.4.1]
Length = 372
Score = 43.1 bits (100), Expect = 0.012, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGS 44
+ + + LRLIRS + PAT R ++ G+
Sbjct: 13 AEAEWLDRLRLIRSRRVGPATWRRLMAEHGT 43
>gi|332557608|ref|ZP_08411930.1| hypothetical protein RSWS8N_01115 [Rhodobacter sphaeroides WS8N]
gi|332275320|gb|EGJ20635.1| hypothetical protein RSWS8N_01115 [Rhodobacter sphaeroides WS8N]
Length = 372
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGS 44
+ + + LRLIRS + PAT R ++ G+
Sbjct: 13 AEAEWLDRLRLIRSRRVGPATWRRLMAEHGT 43
>gi|254440562|ref|ZP_05054056.1| DNA protecting protein DprA, putative [Octadecabacter antarcticus
307]
gi|198256008|gb|EDY80322.1| DNA protecting protein DprA, putative [Octadecabacter antarcticus
307]
Length = 344
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 30 ISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+ P T ++ GSA AL+ +P +A+ V
Sbjct: 1 MGPVTYARLLAEHGSAAAALDALPHIARDAGV 32
>gi|126733565|ref|ZP_01749312.1| DNA processing protein DprA, putative [Roseobacter sp. CCS2]
gi|126716431|gb|EBA13295.1| DNA processing protein DprA, putative [Roseobacter sp. CCS2]
Length = 379
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
T+D+ + LRL+RS + AT R ++ GSA AL +P++A+ V
Sbjct: 17 TEDEAVDRLRLLRSRRVGVATYRRLLAEHGSAADALNALPDVAKAAGV 64
>gi|149915652|ref|ZP_01904178.1| DNA processing protein DprA, putative [Roseobacter sp. AzwK-3b]
gi|149810544|gb|EDM70387.1| DNA processing protein DprA, putative [Roseobacter sp. AzwK-3b]
Length = 357
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIP 53
+RS + P+T ++ GSA+ AL +P
Sbjct: 1 MRSRRVGPSTFYRLLTEHGSAQAALVALP 29
>gi|91203661|emb|CAJ71314.1| strongly similar to competence protein DprA [Candidatus Kuenenia
stuttgartiensis]
Length = 367
Score = 43.1 bits (100), Expect = 0.013, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMI-PELAQRGAVYAGKRAFVQK 71
+T+ + I LRL + I T + ++ FGS + + PEL + + + +
Sbjct: 1 MTEFEAI--LRLHMTKGIGARTYQTLVERFGSIAGVFQAVKPELEKLPGIGGKIANAILE 58
Query: 72 NQQK 75
Q+
Sbjct: 59 ESQR 62
>gi|89055649|ref|YP_511100.1| DNA processing protein DprA, putative [Jannaschia sp. CCS1]
gi|88865198|gb|ABD56075.1| DNA protecting protein DprA [Jannaschia sp. CCS1]
Length = 402
Score = 43.1 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 28 DNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
+ PAT ++ G+A AL+ +PE+A V
Sbjct: 55 RRVGPATYLRLLAEHGTAAAALDALPEVAAAAGVQK 90
>gi|322420083|ref|YP_004199306.1| DNA protecting protein DprA [Geobacter sp. M18]
gi|320126470|gb|ADW14030.1| DNA protecting protein DprA [Geobacter sp. M18]
Length = 359
Score = 43.1 bits (100), Expect = 0.015, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEM-IPEL-AQRGAVYAGKRAFVQKN 72
W L + T ++ +FGS E+AL+ + EL + +G A RA VQ +
Sbjct: 6 WFALKSVPQVGNVTFLRLLAHFGSPERALKASLRELGSVKGVSAAAARAIVQHD 59
>gi|83954521|ref|ZP_00963232.1| DNA processing protein DprA, putative [Sulfitobacter sp.
NAS-14.1]
gi|83840805|gb|EAP79976.1| DNA processing protein DprA, putative [Sulfitobacter sp.
NAS-14.1]
Length = 365
Score = 42.3 bits (98), Expect = 0.019, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 30 ISPATCRDMINYFGSAEQALEMIPELAQRGAV 61
+ T M+ +G+A ALE +P++A+ V
Sbjct: 22 VGVVTYYRMLRDYGTARAALEALPDVARAAGV 53
>gi|58039717|ref|YP_191681.1| DNA processing chain A [Gluconobacter oxydans 621H]
gi|58002131|gb|AAW61025.1| DNA processing chain A [Gluconobacter oxydans 621H]
Length = 394
Score = 42.3 bits (98), Expect = 0.020, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 23/72 (31%)
Query: 5 NPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAG 64
L +I LRL R+ + P ++ +GSA AL +P +R
Sbjct: 3 ASPDMRPVLPATDRIDILRLARTTGVGPINFARLMTQYGSAGAALAALPGRMRRAGRRED 62
Query: 65 KRAFVQKNQQKK 76
+
Sbjct: 63 PVIPTVSRMSDE 74
>gi|95929065|ref|ZP_01311810.1| DNA processing protein DprA, putative [Desulfuromonas acetoxidans
DSM 684]
gi|95134966|gb|EAT16620.1| DNA processing protein DprA, putative [Desulfuromonas acetoxidans
DSM 684]
Length = 363
Score = 42.3 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 17 QKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQKK 76
Q+I WLRL + + +I+++GSAE AL + P+ A K Q
Sbjct: 4 QEIFWLRLHLTAGLGRQRLIQLIHHYGSAEAALAVSPQHWAEHAQVKSKSLGTPPEAQDP 63
Query: 77 S 77
+
Sbjct: 64 T 64
>gi|116747661|ref|YP_844348.1| DNA protecting protein DprA [Syntrophobacter fumaroxidans MPOB]
gi|116696725|gb|ABK15913.1| DNA protecting protein DprA [Syntrophobacter fumaroxidans MPOB]
Length = 386
Score = 41.9 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQRGAVYAGKRAF 68
G S + +I+WL L ++ + +IN FGS L+ P ELA + GK
Sbjct: 6 GASSGESDRIAWLALRLVPDLGNRSVLRLINRFGSPRAVLDAEPKELATVEGL-RGKAIS 64
Query: 69 VQKNQQ 74
+ ++
Sbjct: 65 ALQRKE 70
>gi|312958122|ref|ZP_07772645.1| DNA processing protein [Pseudomonas fluorescens WH6]
gi|311287553|gb|EFQ66111.1| DNA processing protein [Pseudomonas fluorescens WH6]
Length = 367
Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
++ + + LRL R + P R +I FGSA +A+
Sbjct: 3 PSNSHEISPSELEARLRLHRLPEVGPKRFRVLIEAFGSASKAISA 47
>gi|146296271|ref|YP_001180042.1| DNA protecting protein DprA [Caldicellulosiruptor saccharolyticus
DSM 8903]
gi|145409847|gb|ABP66851.1| DNA protecting protein DprA [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 380
Score = 40.8 bits (94), Expect = 0.058, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG---AVYAGKRA 67
+ ++D++K+ WL L I P R + FGS E A E G ++ R
Sbjct: 16 LKMSDERKLYWLWLYTIKGIGPKKFRQIKQEFGSLENAYLNRKEFNLEGFSSSIKQLIRD 75
Query: 68 FVQKNQQK 75
K +K
Sbjct: 76 SDLKEAEK 83
>gi|229587598|ref|YP_002869717.1| hypothetical protein PFLU0020 [Pseudomonas fluorescens SBW25]
gi|229359464|emb|CAY46305.1| conserved SMF-related protein [Pseudomonas fluorescens SBW25]
Length = 364
Score = 40.8 bits (94), Expect = 0.061, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
MNP+ ++ + + LRL R + P R +I FGSA +A+
Sbjct: 1 MNPINCH-EISPSELEARLRLHRLPELGPKRFRLLIEAFGSASKAISA 47
>gi|88811386|ref|ZP_01126641.1| SMF protein [Nitrococcus mobilis Nb-231]
gi|88791275|gb|EAR22387.1| SMF protein [Nitrococcus mobilis Nb-231]
Length = 371
Score = 40.8 bits (94), Expect = 0.066, Method: Composition-based stats.
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
D+ +++WLRL R+ + T + ++ F + L
Sbjct: 7 DESRVAWLRLYRTPGLGARTFQRILECFQTPAAFLAA 43
>gi|119387028|ref|YP_918083.1| DNA protecting protein DprA [Paracoccus denitrificans PD1222]
gi|119377623|gb|ABL72387.1| DNA protecting protein DprA [Paracoccus denitrificans PD1222]
Length = 418
Score = 40.4 bits (93), Expect = 0.075, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 19 ISWLRLIRSDNISPATCRDMINYFGS 44
++ LRLIRS + PAT +++ GS
Sbjct: 24 LAILRLIRSRRVGPATFHRLLDEHGS 49
>gi|118578968|ref|YP_900218.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
gi|118501678|gb|ABK98160.1| DNA protecting protein DprA [Pelobacter propionicus DSM 2379]
Length = 371
Score = 40.4 bits (93), Expect = 0.088, Method: Composition-based stats.
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQRGAV 61
+++ W+ L + T R ++ F + AL P ELA+ +
Sbjct: 8 SEELYWIGLKSVAGVGSVTFRRLLERFDTPRAALHAAPEELARVRGM 54
>gi|255034029|ref|YP_003084650.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053]
gi|254946785|gb|ACT91485.1| DNA protecting protein DprA [Dyadobacter fermentans DSM 18053]
Length = 372
Score = 40.0 bits (92), Expect = 0.098, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 8/70 (11%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQA-------LEMIPELAQRGAVYAGKR 66
+D +KI L L+ + I T R +I+Y GSA Q L IP + + V A
Sbjct: 5 SDAEKICILALMHTPGIGAVTIRQLISYCGSASQVFESDYRKLIKIPGIGDK-IVKAILN 63
Query: 67 AFVQKNQQKK 76
+ +K+
Sbjct: 64 KSTLEYAEKE 73
>gi|255002940|ref|ZP_05277904.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Puerto Rico]
gi|255004065|ref|ZP_05278866.1| DNA processing protein, chain A dprA (smf) [Anaplasma marginale
str. Virginia]
Length = 354
Score = 40.0 bits (92), Expect = 0.099, Method: Composition-based stats.
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 25 IRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQKK 76
+R+ I P + +I + + E AL+ + G + R + + +K+
Sbjct: 1 MRTAKIGPIAFQKLIKLYKTPELALDAL----AHGELGNVGRICPEDDAEKE 48
>gi|288941785|ref|YP_003444025.1| DNA protecting protein DprA [Allochromatium vinosum DSM 180]
gi|288897157|gb|ADC62993.1| DNA protecting protein DprA [Allochromatium vinosum DSM 180]
Length = 377
Score = 40.0 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
WL LI + + P T ++ FGS L
Sbjct: 14 DWLALILAPRVGPRTFARLVEGFGSPSAVLAA 45
>gi|171057039|ref|YP_001789388.1| DNA protecting protein DprA [Leptothrix cholodnii SP-6]
gi|170774484|gb|ACB32623.1| DNA protecting protein DprA [Leptothrix cholodnii SP-6]
Length = 379
Score = 40.0 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+ D+ +WL+L+ + + + R ++ FGS + L ++ R V A +
Sbjct: 1 MDRDELAAWLQLLETPGVGRQSARRLLAAFGSPQAVLSA--SVSARAGVIDKATAAKLEQ 58
Query: 73 Q 73
Sbjct: 59 A 59
>gi|329118699|ref|ZP_08247400.1| SMF-family protein [Neisseria bacilliformis ATCC BAA-1200]
gi|327465202|gb|EGF11486.1| SMF-family protein [Neisseria bacilliformis ATCC BAA-1200]
Length = 422
Score = 39.6 bits (91), Expect = 0.13, Method: Composition-based stats.
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 17 QKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
++ +WL+L +I T ++ +FG+A A
Sbjct: 24 EREAWLKLALMPHIGAETFLQLVKHFGTAADAWRA 58
>gi|260775016|ref|ZP_05883916.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio coralliilyticus ATCC BAA-450]
gi|260609106|gb|EEX35265.1| rossmann fold nucleotide-binding protein Smf possibly involved in
DNA uptake [Vibrio coralliilyticus ATCC BAA-450]
Length = 371
Score = 39.6 bits (91), Expect = 0.15, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKN 72
+T ++ +WL L + I P T + ++ S ++ PE +R + ++Q
Sbjct: 1 MTKEELTAWLSLYFTPRIGPKTFQRLVA-VDSPVNIIDSSPETLRRLGFSDSQLNYLQHR 59
Query: 73 QQKK 76
+
Sbjct: 60 AAED 63
>gi|294671201|ref|ZP_06736055.1| hypothetical protein NEIELOOT_02909 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307139|gb|EFE48382.1| hypothetical protein NEIELOOT_02909 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 405
Score = 39.6 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGS 44
T+ ++ WLRL +I + +I +FG+
Sbjct: 3 TEQERHYWLRLALVPHIGAESFLQLIRHFGT 33
>gi|332531649|ref|ZP_08407546.1| DNA protecting protein dpra [Hylemonella gracilis ATCC 19624]
gi|332039012|gb|EGI75441.1| DNA protecting protein dpra [Hylemonella gracilis ATCC 19624]
Length = 416
Score = 39.2 bits (90), Expect = 0.17, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP 53
+ ++ +WLRL+ + + P + R ++ FGS E L P
Sbjct: 1 MEREELGAWLRLLLAPGLGPVSTRRLLAAFGSPEAVLTQSP 41
>gi|77456247|ref|YP_345752.1| SMF protein [Pseudomonas fluorescens Pf0-1]
gi|77380250|gb|ABA71763.1| DNA protecting protein DprA [Pseudomonas fluorescens Pf0-1]
Length = 366
Score = 39.2 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 10 GVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
S++ + + LRL R + P ++ FGSA +A+
Sbjct: 6 SASVSPAELEARLRLHRLPEVGPKRFAKLLEAFGSASKAISA 47
>gi|300115534|ref|YP_003762109.1| DNA protecting protein DprA [Nitrosococcus watsonii C-113]
gi|299541471|gb|ADJ29788.1| DNA protecting protein DprA [Nitrosococcus watsonii C-113]
Length = 368
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
D++ WL L R+ + + ++ +GS A+ PE + + R +
Sbjct: 2 DERAYWLALHRAPGVGSISFCRLLEKYGSP-AAIFAAPE--RVAGLSGEVRHY 51
>gi|302342564|ref|YP_003807093.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
gi|301639177|gb|ADK84499.1| DNA protecting protein DprA [Desulfarculus baarsii DSM 2075]
Length = 376
Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAE-------QALEMIPELAQRGAV 61
+L+ ++ + WL L + T +++ FG +AL +P L + A
Sbjct: 6 DNAALSREELLDWLGLRLIPGVGGVTFARLLDAFGRPGRALGAPLEALSAVPGLRRTLAE 65
Query: 62 YAGKRAFVQK 71
+RA+ ++
Sbjct: 66 AISRRAWSEE 75
>gi|77166459|ref|YP_344984.1| SMF protein [Nitrosococcus oceani ATCC 19707]
gi|254435425|ref|ZP_05048932.1| DNA protecting protein DprA, putative [Nitrosococcus oceani
AFC27]
gi|76884773|gb|ABA59454.1| DNA protecting protein DprA [Nitrosococcus oceani ATCC 19707]
gi|207088536|gb|EDZ65808.1| DNA protecting protein DprA, putative [Nitrosococcus oceani
AFC27]
Length = 368
Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
D++ WL L R+ + + ++ +GS AL PE + + G + +
Sbjct: 2 DERAYWLALHRAPGVGSVSFCRLLEKYGSP-TALFTSPE--RLAGLSDGIQHY 51
>gi|254447541|ref|ZP_05061007.1| DNA protecting protein DprA [gamma proteobacterium HTCC5015]
gi|198262884|gb|EDY87163.1| DNA protecting protein DprA [gamma proteobacterium HTCC5015]
Length = 373
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQK 75
D+ +WLRL + N+ AT +++ GSA L M P + + AF+Q Q
Sbjct: 2 DELSAWLRLWLAPNLGAATSARLVSTAGSAPAVLRMRPNQLRECGLSDEAIAFLQAEQSP 61
Query: 76 KS 77
S
Sbjct: 62 AS 63
>gi|163868037|ref|YP_001609241.1| excinuclease ABC subunit C [Bartonella tribocorum CIP 105476]
gi|161017688|emb|CAK01246.1| excinuclease ABC subunit C [Bartonella tribocorum CIP 105476]
Length = 661
Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 DNISPATCRDMINYFGSAEQALEM-IPELAQRGAVYAGK 65
+NI P R ++++FGSA+ + + +L + + A
Sbjct: 612 ENIGPTRKRALLHHFGSAKAVADASLEDLKKVTGISAAI 650
>gi|254477402|ref|ZP_05090788.1| DNA protecting protein DprA [Ruegeria sp. R11]
gi|214031645|gb|EEB72480.1| DNA protecting protein DprA [Ruegeria sp. R11]
Length = 362
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 34 TCRDMINYFGSAEQALEMIPELAQRGAV 61
T +I GS + AL +PE+A+ +
Sbjct: 2 TYHRLIAKHGSVQNALSALPEMARAAGI 29
>gi|153869947|ref|ZP_01999450.1| DNA processing chain A [Beggiatoa sp. PS]
gi|152073589|gb|EDN70552.1| DNA processing chain A [Beggiatoa sp. PS]
Length = 420
Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEM 51
WL L+R+ + P +I F S E
Sbjct: 11 WLALLRAPGVGPVNFVRLIKNFESPRGVFEA 41
>gi|121606769|ref|YP_984098.1| DNA protecting protein DprA [Polaromonas naphthalenivorans CJ2]
gi|120595738|gb|ABM39177.1| DNA protecting protein DprA [Polaromonas naphthalenivorans CJ2]
Length = 399
Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 7 LKGGVSLTDDQKI-SWLRLIRSDNISPATCRDMINYFGSAEQALE 50
L+ G + D Q++ +WLRL + + T R ++ FGSA+ E
Sbjct: 10 LQAGEDVKDSQELQAWLRLALTPGVGNTTARKLLAAFGSAQAIFE 54
>gi|296120323|ref|YP_003628101.1| DNA protecting protein DprA [Planctomyces limnophilus DSM 3776]
gi|296012663|gb|ADG65902.1| DNA protecting protein DprA [Planctomyces limnophilus DSM 3776]
Length = 368
Score = 38.1 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRA 67
+TD + L+L+ I PAT +I + GS LE + ++ + + +
Sbjct: 1 MTDAALVDALQLMLIPKIGPATYERLIQHLGSPTAVLEASAAVLEQAGLSSTLAS 55
>gi|148265710|ref|YP_001232416.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
gi|146399210|gb|ABQ27843.1| DNA protecting protein DprA [Geobacter uraniireducens Rf4]
Length = 359
Score = 38.1 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEM-IPELAQRGAVYAGKRAFVQKN-----QQ 74
W L + T R ++ F + E+AL+ EL+ V A A + + +
Sbjct: 6 WFALKSIPLVGNVTFRRLLERFDTPERALKASASELSTVKGVSAAAAASILTHDYRPFAE 65
Query: 75 KKS 77
++S
Sbjct: 66 RES 68
>gi|320161003|ref|YP_004174227.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
gi|319994856|dbj|BAJ63627.1| putative DNA processing protein [Anaerolinea thermophila UNI-1]
Length = 370
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVY 62
D ++ W+ + R ++N+FGS E A E + +
Sbjct: 2 DSRLYWIGFNMVRGVGAVRFRTLLNHFGSLEIAWNAPQEALKEAGLS 48
>gi|209543807|ref|YP_002276036.1| DNA protecting protein DprA [Gluconacetobacter diazotrophicus PAl
5]
gi|209531484|gb|ACI51421.1| DNA protecting protein DprA [Gluconacetobacter diazotrophicus PAl
5]
Length = 395
Score = 38.1 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAE 46
+ LRL R++ + P R ++ +G AE
Sbjct: 9 ARLRLARTEGVGPVGYRKLLLDYGDAE 35
>gi|162145885|ref|YP_001600343.1| DNA processing chain A [Gluconacetobacter diazotrophicus PAl 5]
gi|161784459|emb|CAP53989.1| putative DNA processing chain A [Gluconacetobacter diazotrophicus
PAl 5]
Length = 395
Score = 38.1 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAE 46
+ LRL R++ + P R ++ +G AE
Sbjct: 9 ARLRLARTEGVGPVGYRKLLLDYGDAE 35
>gi|160896284|ref|YP_001561866.1| DNA protecting protein DprA [Delftia acidovorans SPH-1]
gi|160361868|gb|ABX33481.1| DNA protecting protein DprA [Delftia acidovorans SPH-1]
Length = 405
Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 5 NPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQ 47
L+ L ++ +WLRL+ + + T R ++ G A+
Sbjct: 3 AALQSTDRLAPEELSAWLRLLLTPGVGRTTARRLLAACGGAQN 45
>gi|124265474|ref|YP_001019478.1| putative SMF protein [Methylibium petroleiphilum PM1]
gi|124258249|gb|ABM93243.1| putative SMF protein [Methylibium petroleiphilum PM1]
Length = 365
Score = 37.7 bits (86), Expect = 0.48, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
+WLRL+ + +I T R ++ FGS + + P +A R + A K A
Sbjct: 9 AWLRLLETPSIGRDTARRLLAAFGSPQAVFDA-PPVALRELLTAEKAAA 56
>gi|268316813|ref|YP_003290532.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252]
gi|262334347|gb|ACY48144.1| excinuclease ABC, C subunit [Rhodothermus marinus DSM 4252]
Length = 615
Score = 37.7 bits (86), Expect = 0.50, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 24 LIRSDNISPATCRDMINYFGSAEQALEM-IPELAQRGAVYAGKRAFVQKNQQKKS 77
L+ I P T ++ +FGSA + E + LA +R + S
Sbjct: 560 LLDIPGIGPRTVEKLLQHFGSARRVREADLEALAAVVGRARAERIRQHFDAASTS 614
>gi|225025550|ref|ZP_03714742.1| hypothetical protein EIKCOROL_02450 [Eikenella corrodens ATCC
23834]
gi|224941696|gb|EEG22905.1| hypothetical protein EIKCOROL_02450 [Eikenella corrodens ATCC
23834]
Length = 430
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
++++W++L I T ++ ++GSA
Sbjct: 5 AERLAWIQLALMPYIGAETFYELCRHYGSAAAVWAA 40
>gi|114321777|ref|YP_743460.1| DNA protecting protein DprA [Alkalilimnicola ehrlichii MLHE-1]
gi|114228171|gb|ABI57970.1| DNA protecting protein DprA [Alkalilimnicola ehrlichii MLHE-1]
Length = 379
Score = 37.7 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQRG---AVYAGKRAFVQ 70
D + + L L R + +I++FGS L P EL + G AV A
Sbjct: 4 DPELRARLALWRVPGLGARGWWRLIDHFGSPRHVLAAPPAELHRCGLPAAVVEAIHAATP 63
Query: 71 KNQQ 74
++
Sbjct: 64 ESAD 67
>gi|167630278|ref|YP_001680777.1| DNA processing protein dpra, putative [Heliobacterium
modesticaldum Ice1]
gi|167593018|gb|ABZ84766.1| DNA processing protein dpra, putative [Heliobacterium
modesticaldum Ice1]
Length = 378
Score = 37.7 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQA 48
++ SW+ L I P ++ +FG+A A
Sbjct: 8 SERDSWIALSALPGIGPRRFYALLGHFGTARNA 40
>gi|20088995|ref|NP_615070.1| Hef nuclease [Methanosarcina acetivorans C2A]
gi|19913848|gb|AAM03550.1| helicase [Methanosarcina acetivorans C2A]
Length = 821
Score = 37.7 bits (86), Expect = 0.58, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 2 KKMNP--LKGGVSLTDDQKISWLRLIRS-DNISPATCRDMINYFGSAEQALEMIPELAQR 58
+++NP K +L++ Q+ LI S NI P R+++ +FGS + L+ E ++
Sbjct: 744 REINPHGKKSASTLSEQQEY----LISSISNIGPKAARNLLLHFGSVKAVLQADTEELKK 799
Query: 59 GAVYAGKRAFVQKN 72
+ K A K
Sbjct: 800 VKLIGPKTAARIKE 813
>gi|253700153|ref|YP_003021342.1| DNA protecting protein DprA [Geobacter sp. M21]
gi|251775003|gb|ACT17584.1| DNA protecting protein DprA [Geobacter sp. M21]
Length = 359
Score = 37.7 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEM-IPELAQRGAVYAGKRAFV 69
W L + + T +++ FG+ E+AL+ + EL++ V A +
Sbjct: 6 WFALKSAPLVGNVTFLRLLSRFGTPERALKASLQELSEVKGVSPQAAASI 55
>gi|197119085|ref|YP_002139512.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
gi|197088445|gb|ACH39716.1| DNA uptake/processing protein SMF [Geobacter bemidjiensis Bem]
Length = 359
Score = 37.7 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQRGAVY 62
W L + + T +++ FG+ E+ LE P EL++ V
Sbjct: 6 WFALKSAPLVGNVTFLRLLSRFGTPERVLEASPQELSEVRGVS 48
>gi|220933380|ref|YP_002512279.1| smf protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219994690|gb|ACL71292.1| smf protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 375
Score = 37.3 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 13 LTDDQKI-SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
+TD + +WLRL + + P +I FG QAL + + + +F+ +
Sbjct: 1 MTDTDVLTAWLRLWHAPGVGPGILSGLIERFGGPLQALSAPTQALREAGLGDDALSFLDR 60
Query: 72 NQQKK 76
+ Q K
Sbjct: 61 HAQPK 65
>gi|86131171|ref|ZP_01049770.1| Smf protein DNA processing chain A [Dokdonia donghaensis MED134]
gi|85818582|gb|EAQ39742.1| Smf protein DNA processing chain A [Dokdonia donghaensis MED134]
Length = 367
Score = 37.3 bits (85), Expect = 0.66, Method: Composition-based stats.
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALE 50
+T+ + ++ L L + N+ + + ++ +FGSA LE
Sbjct: 1 MTEKELLALLTLQYTPNLGDGSIKKLLQHFGSAMAVLE 38
>gi|319953068|ref|YP_004164335.1| DNA protecting protein dpra [Cellulophaga algicola DSM 14237]
gi|319421728|gb|ADV48837.1| DNA protecting protein DprA [Cellulophaga algicola DSM 14237]
Length = 367
Score = 37.3 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALE 50
+TD + IS L+L R NI T + +I++ G+ E
Sbjct: 1 MTDSELISLLKLQRIPNIGDVTAKKLISHCGNPNAVFE 38
>gi|104779339|ref|YP_605837.1| Smf protein, DNA processing chain A [Pseudomonas entomophila L48]
gi|95108326|emb|CAK13020.1| putative Smf protein, DNA processing chain A [Pseudomonas
entomophila L48]
Length = 365
Score = 37.3 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 4 MNPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
M + + + + LRL R + +I FGSA AL
Sbjct: 1 MTEPRSSPC-SPAELEARLRLHRLPDAGLRRFHTLIEAFGSASSALTA 47
>gi|299531888|ref|ZP_07045288.1| DNA protecting protein DprA [Comamonas testosteroni S44]
gi|298720063|gb|EFI61020.1| DNA protecting protein DprA [Comamonas testosteroni S44]
Length = 397
Score = 37.3 bits (85), Expect = 0.75, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP 53
D + ++WLRL+ + + T R ++ GSA+ A+ +P
Sbjct: 15 DAEILAWLRLLLTPGLGRTTARRLLASAGSAD-AVWRLP 52
>gi|264680867|ref|YP_003280777.1| DNA protecting protein DprA [Comamonas testosteroni CNB-2]
gi|262211383|gb|ACY35481.1| DNA protecting protein DprA [Comamonas testosteroni CNB-2]
Length = 397
Score = 37.3 bits (85), Expect = 0.79, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP 53
D + ++WLRL+ + + T R ++ GSA+ A+ +P
Sbjct: 15 DAEILAWLRLLLTPGLGRTTARRLLASAGSAD-AVWRLP 52
>gi|332291882|ref|YP_004430491.1| DNA protecting protein DprA [Krokinobacter diaphorus 4H-3-7-5]
gi|332169968|gb|AEE19223.1| DNA protecting protein DprA [Krokinobacter diaphorus 4H-3-7-5]
Length = 367
Score = 36.9 bits (84), Expect = 0.81, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALE 50
+++ + +S L L + N+ T + +I FGSAE+ L+
Sbjct: 1 MSEKELLSLLALQHTPNLGDGTIKKLIQQFGSAEEVLK 38
>gi|73543092|ref|YP_297612.1| SMF protein [Ralstonia eutropha JMP134]
gi|72120505|gb|AAZ62768.1| SMF protein [Ralstonia eutropha JMP134]
Length = 379
Score = 36.9 bits (84), Expect = 0.81, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFG 43
D ++WLRL+ + I P T R ++ FG
Sbjct: 19 DDTLAWLRLVSAPGIGPVTVRLLLAAFG 46
>gi|37521330|ref|NP_924707.1| hypothetical protein gll1761 [Gloeobacter violaceus PCC 7421]
gi|35212327|dbj|BAC89702.1| gll1761 [Gloeobacter violaceus PCC 7421]
Length = 360
Score = 36.9 bits (84), Expect = 0.87, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
++ W+ +S + P T R + +FGS + A E
Sbjct: 3 SERAYWVAWRQSPGVGPLTIRRLREHFGSLQAAWEA 38
>gi|325286330|ref|YP_004262120.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489]
gi|324321784|gb|ADY29249.1| DNA protecting protein DprA [Cellulophaga lytica DSM 7489]
Length = 366
Score = 36.9 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQ 47
+T + I+ LRL NI T + +I + GSA Q
Sbjct: 1 MTTTELIATLRLQSIPNIGSVTAKKLIAHCGSASQ 35
>gi|326319400|ref|YP_004237072.1| DNA protecting protein DprA [Acidovorax avenae subsp. avenae ATCC
19860]
gi|323376236|gb|ADX48505.1| DNA protecting protein DprA [Acidovorax avenae subsp. avenae ATCC
19860]
Length = 403
Score = 36.9 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFG-------SAEQALEMIPELAQRGAVYA-G 64
+ D+ +WLRL+ + + P T R ++ FG E AL + AQ A+ A
Sbjct: 1 MQRDELSAWLRLMLTPGVGPGTARRLLAAFGLPQQIFQQPEGALAALATSAQAKALCAVP 60
Query: 65 KRAFVQKNQ 73
++
Sbjct: 61 PGLAALEDA 69
>gi|254488483|ref|ZP_05101688.1| DNA processing protein [Roseobacter sp. GAI101]
gi|214045352|gb|EEB85990.1| DNA processing protein [Roseobacter sp. GAI101]
Length = 347
Score = 36.9 bits (84), Expect = 0.98, Method: Composition-based stats.
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 34 TCRDMINYFGSAEQALEMIPELAQRGAV 61
T + ++ G+A+ AL +PE+A+ V
Sbjct: 3 TYKRLLIEHGTAQNALVALPEVARAAGV 30
>gi|239908043|ref|YP_002954784.1| SMF protein [Desulfovibrio magneticus RS-1]
gi|239797909|dbj|BAH76898.1| SMF protein [Desulfovibrio magneticus RS-1]
Length = 455
Score = 36.9 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 4/50 (8%)
Query: 5 NPLKGGVSLTDD----QKISWLRLIRSDNISPATCRDMINYFGSAEQALE 50
P + DD + ++ LRL I P T R + + + SA AL
Sbjct: 7 APPQAATWADDDAFVAECLACLRLRLQPGIGPRTVRRIFDRYDSAVAALA 56
>gi|292493777|ref|YP_003529216.1| DNA protecting protein DprA [Nitrosococcus halophilus Nc4]
gi|291582372|gb|ADE16829.1| DNA protecting protein DprA [Nitrosococcus halophilus Nc4]
Length = 368
Score = 36.5 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 17 QKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELA 56
++ WL L R+ I ++ +GS L PE A
Sbjct: 3 ERACWLALHRAPGIGSIGFGRLLKEYGSPAAVLAA-PEKA 41
>gi|86608165|ref|YP_476927.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556707|gb|ABD01664.1| DNA protecting protein DprA [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 385
Score = 36.5 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 6 PLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
G + ++ WL R I P + + +FGS E+A +
Sbjct: 15 EPSRGPGHEERERPYWLAWARIKGIGPHRLKRLAEFFGSLERAWQA 60
>gi|148545342|ref|YP_001265444.1| DNA protecting protein DprA [Pseudomonas putida F1]
gi|148509400|gb|ABQ76260.1| DNA protecting protein DprA [Pseudomonas putida F1]
Length = 365
Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+ LRL R R +++ FGSA AL
Sbjct: 16 ARLRLHRLPETGLRRFRTLLDAFGSASSALSA 47
>gi|163781568|ref|ZP_02176568.1| hypothetical protein HG1285_01758 [Hydrogenivirga sp. 128-5-R1-1]
gi|159882788|gb|EDP76292.1| hypothetical protein HG1285_01758 [Hydrogenivirga sp. 128-5-R1-1]
Length = 336
Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEM-IPELAQRGAVYAGKRAFVQKNQQK 75
WLRL + + T + FG AE L +L + +K
Sbjct: 7 WLRLKLTKGVGEITLYRLYKTFGGAENILSADYKDLKGCVGESRARAILSGDFDEK 62
>gi|306841750|ref|ZP_07474436.1| DNA protecting protein DprA [Brucella sp. BO2]
gi|306288155|gb|EFM59542.1| DNA protecting protein DprA [Brucella sp. BO2]
Length = 345
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 49 LEMIPELAQRGAVYAGKRAFVQKNQQKK 76
+EM+P+L RG R +++
Sbjct: 1 MEMLPDLNIRGGSARPIRIASVDEAERE 28
>gi|269925224|ref|YP_003321847.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798]
gi|269788884|gb|ACZ41025.1| DNA protecting protein DprA [Thermobaculum terrenum ATCC BAA-798]
Length = 365
Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEM 51
W+ R +I PA R ++ +FG ++A E
Sbjct: 13 WIAFSRIPSIGPARIRKLLAHFGGLQRAWEA 43
>gi|94970368|ref|YP_592416.1| DNA processing protein DprA, putative [Candidatus Koribacter
versatilis Ellin345]
gi|94552418|gb|ABF42342.1| DNA protecting protein DprA [Candidatus Koribacter versatilis
Ellin345]
Length = 385
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 11 VSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM-IPELAQRGAVYAGKRAFV 69
+ ++ Q+ WL L + + P R ++ +FG E+ + EL G A ++
Sbjct: 6 PTTSNRQR-QWLALSLTPQLGPTRGRRLVEHFGDVERIFRASLTELEASGLPAASAQSIA 64
Query: 70 Q----KNQQKK 76
+ + +
Sbjct: 65 LGKSYELAEDE 75
>gi|330806736|ref|YP_004351198.1| hypothetical protein PSEBR_a72 [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|327374844|gb|AEA66194.1| Conserved hypothetical protein [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
Length = 364
Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 7 LKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
L ++ + + LRL R + P ++ FGSA +A+
Sbjct: 3 LPESTPVSPAELEARLRLHRLPELGPKRFMTLMEAFGSASKAISA 47
>gi|91790470|ref|YP_551422.1| DNA processing protein DprA [Polaromonas sp. JS666]
gi|91699695|gb|ABE46524.1| DNA protecting protein DprA [Polaromonas sp. JS666]
Length = 374
Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQ 47
+ + +WLRL + + T R ++ FGSA+
Sbjct: 1 MDTQELRAWLRLTLTPGVGNETARQLLATFGSAQA 35
>gi|161526294|ref|YP_001581306.1| DNA protecting protein DprA [Burkholderia multivorans ATCC 17616]
gi|189348992|ref|YP_001944620.1| DNA processing protein [Burkholderia multivorans ATCC 17616]
gi|160343723|gb|ABX16809.1| DNA protecting protein DprA [Burkholderia multivorans ATCC 17616]
gi|189333014|dbj|BAG42084.1| DNA processing protein [Burkholderia multivorans ATCC 17616]
Length = 425
Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
+LT +WL+L + ++ PA R +++ FGSA+ L + + RA
Sbjct: 5 ALTRAGLRAWLQLAHAPSLPPAVLRALLDAFGSADALLRAPDDAIAAASSPTAVRAVRAS 64
Query: 72 N 72
Sbjct: 65 E 65
>gi|120602206|ref|YP_966606.1| DNA protecting protein DprA [Desulfovibrio vulgaris DP4]
gi|120562435|gb|ABM28179.1| DNA protecting protein DprA [Desulfovibrio vulgaris DP4]
Length = 668
Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAF 68
L L ++ + + +I +FGSA A++ P LA G +A
Sbjct: 40 LALRHTEGLGARSHIRLIRHFGSAYAAVQRAPHLAGSGVRQQAAQAL 86
>gi|221214667|ref|ZP_03587637.1| DNA protecting protein DprA [Burkholderia multivorans CGD1]
gi|221165557|gb|EED98033.1| DNA protecting protein DprA [Burkholderia multivorans CGD1]
Length = 510
Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
+LT +WL+L + ++ PA R +++ FGSA+ L + + RA
Sbjct: 90 ALTRAGLRAWLQLAHAPSLPPAVLRALLDAFGSADALLRAPDDAIAAASSPTAVRAVRAS 149
Query: 72 N 72
Sbjct: 150 E 150
>gi|221201857|ref|ZP_03574894.1| DNA protecting protein DprA [Burkholderia multivorans CGD2M]
gi|221207637|ref|ZP_03580645.1| DNA protecting protein DprA [Burkholderia multivorans CGD2]
gi|221172483|gb|EEE04922.1| DNA protecting protein DprA [Burkholderia multivorans CGD2]
gi|221178277|gb|EEE10687.1| DNA protecting protein DprA [Burkholderia multivorans CGD2M]
Length = 478
Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 27/61 (44%)
Query: 12 SLTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQK 71
+LT +WL+L + ++ PA R +++ FGSA+ L + + RA
Sbjct: 53 ALTRAGLRAWLQLAHAPSLPPAVLRALLDAFGSADALLRAPDDAIAAASSPTAVRAVRAS 112
Query: 72 N 72
Sbjct: 113 E 113
>gi|167031106|ref|YP_001666337.1| DNA protecting protein DprA [Pseudomonas putida GB-1]
gi|166857594|gb|ABY96001.1| DNA protecting protein DprA [Pseudomonas putida GB-1]
Length = 365
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+ LRL R R +++ FGSA AL
Sbjct: 16 ARLRLHRLPETGLRRFRTLLDAFGSASCALSA 47
>gi|241664934|ref|YP_002983294.1| DNA protecting protein DprA [Ralstonia pickettii 12D]
gi|240866961|gb|ACS64622.1| DNA protecting protein DprA [Ralstonia pickettii 12D]
Length = 401
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAE-------QALEM-IPELAQRG 59
+ +WLRL + + P R ++ FG + AL +PE R
Sbjct: 26 AELAAWLRLTETPGVGPVAARQLLAAFGLPQDIFAQPYAALAKVLPERQARA 77
>gi|46580474|ref|YP_011282.1| DNA processing protein DprA [Desulfovibrio vulgaris str.
Hildenborough]
gi|46449893|gb|AAS96542.1| DNA processing protein DprA, putative [Desulfovibrio vulgaris
str. Hildenborough]
gi|311234216|gb|ADP87070.1| DNA protecting protein DprA [Desulfovibrio vulgaris RCH1]
Length = 663
Score = 35.4 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
L L ++ + + +I +FGSA A++ P LA G
Sbjct: 40 LALRHTEGLGARSHIRLIRHFGSAFAAVQRAPHLAGSG 77
>gi|300313961|ref|YP_003778053.1| SMF protein involved in DNA uptake protein [Herbaspirillum
seropedicae SmR1]
gi|300076746|gb|ADJ66145.1| SMF protein involved in DNA uptake protein [Herbaspirillum
seropedicae SmR1]
Length = 378
Score = 35.4 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 21 WLRLIRSDNISPATCRDMINYFG-------SAEQALEMI--PELAQR 58
WLRL ++ + PAT R ++ FG + AL + P LA R
Sbjct: 21 WLRLSLAEGVGPATARRLLAAFGLPGQLWQADASALAAVVSPALAAR 67
>gi|114330415|ref|YP_746637.1| DNA protecting protein DprA [Nitrosomonas eutropha C91]
gi|114307429|gb|ABI58672.1| DNA protecting protein DprA [Nitrosomonas eutropha C91]
Length = 373
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 15 DDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
D SWLRL ++ + + R ++ FG + L
Sbjct: 4 DRDIESWLRLGLTEGVGSGSLRRLLVAFGDPAEVLAA 40
>gi|94266973|ref|ZP_01290622.1| SMF protein [delta proteobacterium MLMS-1]
gi|93452328|gb|EAT02959.1| SMF protein [delta proteobacterium MLMS-1]
Length = 381
Score = 35.0 bits (79), Expect = 3.1, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQRGAVYAGKRAFVQKN 72
TD + + WL L+ + + P ++ +G L +L G A A Q +
Sbjct: 5 TDKRLLDWLTLLFTPGLGPVAAGRLLAGYGGMAAILAATAKDLQAHGLRPASAEALAQGS 64
Query: 73 QQKKS 77
+ ++
Sbjct: 65 ARPRA 69
>gi|283852862|ref|ZP_06370124.1| DNA protecting protein DprA [Desulfovibrio sp. FW1012B]
gi|283571772|gb|EFC19770.1| DNA protecting protein DprA [Desulfovibrio sp. FW1012B]
Length = 437
Score = 35.0 bits (79), Expect = 3.2, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRG 59
+ LRL + + P T + + + + SA +AL + +G
Sbjct: 33 ACLRLRNTPGLGPRTWKRIFDRYPSAAEALADVRAFGAQG 72
>gi|300692921|ref|YP_003753916.1| smf, DNA processing chain A (drpA) [Ralstonia solanacearum PSI07]
gi|299079981|emb|CBJ52658.1| putative smf, DNA processing chain A (drpA) [Ralstonia
solanacearum PSI07]
Length = 401
Score = 35.0 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 8/61 (13%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFG--------SAEQALEMIPELAQRGAVYAGKRA 67
+ +WLRL + I P R ++ FG S ++++PE R + A
Sbjct: 26 AELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALVKVLPERQARALLAEPDEA 85
Query: 68 F 68
Sbjct: 86 L 86
>gi|134093406|ref|YP_001098481.1| putative nucleotide-binding protein involved in DNA uptake (Smf
protein) [Herminiimonas arsenicoxydans]
gi|133737309|emb|CAL60352.1| putative DNA protecting protein DprA [Herminiimonas
arsenicoxydans]
Length = 372
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
SWLRL ++ + P T R ++ FG E
Sbjct: 9 SWLRLEQTPGVGPDTARKLLGAFGLPENIFAA 40
>gi|119509167|ref|ZP_01628318.1| SMF protein [Nodularia spumigena CCY9414]
gi|119466333|gb|EAW47219.1| SMF protein [Nodularia spumigena CCY9414]
Length = 372
Score = 35.0 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+++ WL R + P R + +FG+ A
Sbjct: 3 EERAYWLAWARISGVGPVLLRRLHQHFGTLATAWNA 38
>gi|309780260|ref|ZP_07675011.1| SMF family protein [Ralstonia sp. 5_7_47FAA]
gi|308920963|gb|EFP66609.1| SMF family protein [Ralstonia sp. 5_7_47FAA]
Length = 401
Score = 35.0 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAE-------QALEM-IPELAQRG 59
+ +WLRL + + P R ++ FG + AL +PE R
Sbjct: 26 AELAAWLRLTETPGVGPVAARQLLAAFGLPQDIFAQPYAALAKVLPERQARA 77
>gi|94263095|ref|ZP_01286914.1| SMF protein [delta proteobacterium MLMS-1]
gi|93456638|gb|EAT06746.1| SMF protein [delta proteobacterium MLMS-1]
Length = 381
Score = 35.0 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 14 TDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQRGAVYAGKRAFVQKN 72
TD + + WL L+ + + P ++ +G L +L G A A Q +
Sbjct: 5 TDKRLLDWLTLLFTPGLGPVAAGRLLAGYGGMAAILAATAKDLQAHGLRPASAEALAQGS 64
Query: 73 QQKKS 77
+ ++
Sbjct: 65 ARPRA 69
>gi|17544787|ref|NP_518189.1| SMF protein [Ralstonia solanacearum GMI1000]
gi|17427076|emb|CAD13596.1| putative smf protein (predicted rossmann fold nucleotide-binding
protein involved in dna uptake) [Ralstonia solanacearum
GMI1000]
Length = 401
Score = 34.6 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAE-------QALEM-IPELAQRGAVYAGKRA 67
+ +WLRL + I P R ++ FG + AL +PE R + A
Sbjct: 26 AELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALAKVLPERQARALLAEPDEA 85
Query: 68 F 68
Sbjct: 86 L 86
>gi|260221948|emb|CBA31022.1| Protein smf [Curvibacter putative symbiont of Hydra
magnipapillata]
Length = 392
Score = 34.6 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 18/39 (46%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEM 51
+ ++ SWLRL + + T R ++ +FG E
Sbjct: 5 MDAEELRSWLRLELTSGVGNVTARSLLQHFGLPNSIFEA 43
>gi|163786973|ref|ZP_02181420.1| DNA processing protein [Flavobacteriales bacterium ALC-1]
gi|159876861|gb|EDP70918.1| DNA processing protein [Flavobacteriales bacterium ALC-1]
Length = 367
Score = 34.6 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQ 47
+TD Q I L L I T + +IN+ GSAE
Sbjct: 1 MTDQQLIYALALQHVPKIGSTTAKKLINHCGSAEA 35
>gi|207727556|ref|YP_002255950.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum MolK2]
gi|206590793|emb|CAQ56405.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum MolK2]
Length = 403
Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFG--------SAEQALEMIPELAQRGAVYAGKRA 67
+ +WLRL + I P R ++ FG S ++ +PE R + A
Sbjct: 26 AELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALVKTLPERQARALLAEPDEA 85
Query: 68 F 68
Sbjct: 86 L 86
>gi|83748635|ref|ZP_00945653.1| Smf protein [Ralstonia solanacearum UW551]
gi|207741947|ref|YP_002258339.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum
IPO1609]
gi|83724679|gb|EAP71839.1| Smf protein [Ralstonia solanacearum UW551]
gi|206593333|emb|CAQ60260.1| smf protein (predicted rossmann fold nucleotide-binding protein
involved in dna uptake) [Ralstonia solanacearum
IPO1609]
Length = 403
Score = 34.6 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFG--------SAEQALEMIPELAQRGAVYAGKRA 67
+ +WLRL + I P R ++ FG S ++ +PE R + A
Sbjct: 26 AELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALVKTLPERQARALLAEPDEA 85
Query: 68 F 68
Sbjct: 86 L 86
>gi|299068357|emb|CBJ39581.1| putative smf, DNA processing chain A (drpA) [Ralstonia
solanacearum CMR15]
Length = 401
Score = 34.6 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFGSAE-------QALEM-IPELAQRGAVYAGKRA 67
+ +WLRL + I P R ++ FG + AL +PE R + A
Sbjct: 26 AELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALAKVLPERQARALLAEPDEA 85
Query: 68 F 68
Sbjct: 86 L 86
>gi|189426316|ref|YP_001953493.1| DNA protecting protein DprA [Geobacter lovleyi SZ]
gi|189422575|gb|ACD96973.1| DNA protecting protein DprA [Geobacter lovleyi SZ]
Length = 364
Score = 34.6 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQ 74
SW+ L + I P R ++ F + P A R + +
Sbjct: 5 SWIALRAVEGIGPVLFRRLLERFETPGHVFSAAP------GALATVRGVTPQIAE 53
>gi|187930744|ref|YP_001901231.1| DNA protecting protein DprA [Ralstonia pickettii 12J]
gi|187727634|gb|ACD28799.1| DNA protecting protein DprA [Ralstonia pickettii 12J]
Length = 402
Score = 34.6 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 8/47 (17%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAE-------QALEM-IPELAQRG 59
WLRL + + P R ++ FG + AL +PE R
Sbjct: 31 WLRLTETPGVGPVAARQLLAAFGLPQDIFAQPYAALAKVLPERQARA 77
>gi|77918023|ref|YP_355838.1| Rossmann-fold nucleotide-binding protein [Pelobacter carbinolicus
DSM 2380]
gi|77544106|gb|ABA87668.1| DNA protecting protein DprA [Pelobacter carbinolicus DSM 2380]
Length = 366
Score = 34.2 bits (77), Expect = 5.3, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIP 53
+WLRL + + A ++ FGS E AL P
Sbjct: 7 AWLRLHLTPGLGRAGIIRLMEAFGSPEAALIASP 40
>gi|300705528|ref|YP_003747131.1| smf, DNA processing chain a (drpa) [Ralstonia solanacearum
CFBP2957]
gi|299073192|emb|CBJ44550.1| putative smf, DNA processing chain A (drpA) [Ralstonia
solanacearum CFBP2957]
Length = 403
Score = 34.2 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 16 DQKISWLRLIRSDNISPATCRDMINYFG--------SAEQALEMIPELAQRG 59
+ +WLRL + I P R ++ FG S ++++PE R
Sbjct: 26 AELAAWLRLTETPGIGPVAARQLLAAFGLPQDIFRQSYAALVKVLPERQARA 77
>gi|258545463|ref|ZP_05705697.1| DNA processing protein DprA [Cardiobacterium hominis ATCC 15826]
gi|258519296|gb|EEV88155.1| DNA processing protein DprA [Cardiobacterium hominis ATCC 15826]
Length = 369
Score = 34.2 bits (77), Expect = 5.9, Method: Composition-based stats.
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEM--------IPELAQ 57
+W L+R+ + T ++ FGS E +P L+
Sbjct: 7 AWCALLRAPGVGSKTYHTLLEAFGSPEAFFHAPTADIRKRLPNLSA 52
>gi|332525406|ref|ZP_08401566.1| putative SMF protein [Rubrivivax benzoatilyticus JA2]
gi|332108675|gb|EGJ09899.1| putative SMF protein [Rubrivivax benzoatilyticus JA2]
Length = 365
Score = 33.8 bits (76), Expect = 7.3, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIP-ELAQRGAVY 62
+W RL+++ + R ++ FGS E L P L + G
Sbjct: 9 AWFRLLQTPGLGREGARRLLAAFGSPEAVLAASPVALTELGGPA 52
>gi|294338533|emb|CAZ86862.1| Protein smf (DNA-processing chain A) [Thiomonas sp. 3As]
Length = 379
Score = 33.8 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 20 SWLRLIRSDNISPATCRDMINYFG 43
WLRL+++ + T R +++ FG
Sbjct: 9 DWLRLMQTPGVGALTARQLLSAFG 32
>gi|260575925|ref|ZP_05843920.1| DNA protecting protein DprA [Rhodobacter sp. SW2]
gi|259021851|gb|EEW25152.1| DNA protecting protein DprA [Rhodobacter sp. SW2]
Length = 378
Score = 33.8 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 22 LRLIRSDNISPATCRDMINYFGSAE 46
L+L RS + P T +I GS +
Sbjct: 22 LQLSRSRRVGPVTYHRLIADHGSVQ 46
>gi|15805160|ref|NP_293846.1| smf protein [Deinococcus radiodurans R1]
gi|6457785|gb|AAF09710.1|AE001874_7 smf protein [Deinococcus radiodurans R1]
Length = 370
Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 27 SDNISPATCRDMINYFGSAEQALEM-IPELAQRGAV 61
+ + P ++ +FGSAE AL + EL + +
Sbjct: 22 TPGLGPRRIENLRRHFGSAEAALAAPLTELRRVEGL 57
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.302 0.137 0.385
Lambda K H
0.267 0.0426 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,398,602,243
Number of Sequences: 14124377
Number of extensions: 46977748
Number of successful extensions: 125800
Number of sequences better than 10.0: 380
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 125274
Number of HSP's gapped (non-prelim): 540
length of query: 77
length of database: 4,842,793,630
effective HSP length: 48
effective length of query: 29
effective length of database: 4,164,823,534
effective search space: 120779882486
effective search space used: 120779882486
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.7 bits)
S2: 76 (33.8 bits)