RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
(77 letters)
>gnl|CDD|31101 COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein
involved in DNA uptake [DNA replication, recombination,
and repair / Intracellular trafficking and secretion].
Length = 350
Score = 36.1 bits (83), Expect = 0.002
Identities = 10/46 (21%), Positives = 27/46 (58%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
++D ++++WL+L ++N+ P ++ +FG+ E L++ +
Sbjct: 1 MSDRERLAWLKLSSTNNLGPLNLLLLLKHFGNKESILKIPLPQLEI 46
>gnl|CDD|173840 cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA
dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase,
which catalyzes the oxidative decarboxylation of
glutaryl-CoA to crotonyl-CoA and carbon dioxide in the
catabolism of lysine, hydroxylysine, and tryptophan. It
uses electron transfer flavoprotein (ETF) as an electron
acceptor. GCD is a homotetramer. GCD deficiency leads to
a severe neurological disorder in humans.
Length = 386
Score = 25.8 bits (57), Expect = 3.0
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 39 INYFGSAEQALEMIPELAQ 57
I FGS EQ + +P+LA
Sbjct: 105 IYDFGSEEQKQKYLPKLAS 123
>gnl|CDD|73065 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyze bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome..
Length = 334
Score = 25.2 bits (55), Expect = 3.6
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 33 ATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
ATC Y S Q L M PE R AVY+
Sbjct: 10 ATC-----YMNSLLQQLYMTPEF--RNAVYS 33
>gnl|CDD|153223 cd03129, GAT1_Peptidase_E_like, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E_like
proteins. This group contains proteins similar to the
aspartyl dipeptidases Salmonella typhimurium peptidase E
and Xenopus laevis peptidase E and, extracellular
cyanophycinases from Pseudomonas anguilliseptica BI
(CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Cyanophycinases are intracellular exopeptidases which
hydrolyze the polymer cyanophycin (multi
L-arginyl-poly-L-aspartic acid) to the dipeptide
beta-Asp-Arg. Peptidase E and cyanophycinases are
thought to have a Ser-His-Glu catalytic triad which
differs from the Cys-His-Glu catalytic triad typical of
GATase1 domains by having a Ser in place of the reactive
Cys at the nucleophile elbow. Xenopus peptidase E is
developmentally regulated in response to thyroid hormone
and, it is thought to play a role in apoptosis during
tail reabsorption.
Length = 210
Score = 24.6 bits (54), Expect = 5.7
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 48 ALEMIPELAQRGAVYAG 64
L+ I + RG V G
Sbjct: 103 LLDAILKRVARGVVIGG 119
>gnl|CDD|30381 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 24.3 bits (53), Expect = 6.7
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 9 GGVSLTDDQKISWLRLIRSDNISPATCRDMIN--YFGSAEQALEMIPELAQRGAVYAG 64
G V L+ + + I + + D+I+ S E+A+ LA+ + G
Sbjct: 206 GSVLLSGGEGPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVG 263
>gnl|CDD|48106 cd03179, GST_C_1, GST_C family, unknown subfamily 1; composed of
uncharacterized bacterial proteins, with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal thioredoxin-fold domain and a
C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GSH binds
to the N-terminal domain while the hydrophobic
substrate occupies a pocket in the C-terminal domain..
Length = 105
Score = 24.4 bits (53), Expect = 7.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 33 ATCRDMINYFGSAEQALEMIPELAQRGAVYAG 64
AT R + Y G E E++ L +RG
Sbjct: 22 ATLRFLRVYLGLGEADAEVLAFLRERGHAALA 53
>gnl|CDD|73063 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin
molecules from polyubiquinated peptides by cleavage of
isopeptide bonds. They hydrolyse bonds involving the
carboxyl group of the C-terminal Gly residue of
ubiquitin. The purpose of the de-ubiquitination is
thought to be editing of the ubiquitin conjugates,
which could rescue them from degradation, as well as
recycling of the ubiquitin. The ubiquitin/proteasome
system is responsible for most protein turnover in the
mammalian cell, and with over 50 members, family C19 is
one of the largest families of peptidases in the human
genome..
Length = 305
Score = 24.5 bits (53), Expect = 7.4
Identities = 11/42 (26%), Positives = 14/42 (33%), Gaps = 5/42 (11%)
Query: 34 TCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQQK 75
TC Y S Q L +PEL Y R ++
Sbjct: 8 TC-----YLNSTLQCLRSVPELRDALKNYNPARRGANQSSDN 44
>gnl|CDD|35260 KOG0037, KOG0037, KOG0037, Ca2+-binding protein, EF-Hand protein
superfamily [Signal transduction mechanisms].
Length = 221
Score = 24.1 bits (52), Expect = 7.5
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMINYFGS 44
+ + L S TCR MI+ F
Sbjct: 74 ILAKELQQALSNGTWSPFSIETCRLMISMFDR 105
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.317 0.130 0.371
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 878,576
Number of extensions: 35207
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 13
Length of query: 77
Length of database: 6,263,737
Length adjustment: 47
Effective length of query: 30
Effective length of database: 5,248,114
Effective search space: 157443420
Effective search space used: 157443420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)