RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
(77 letters)
>gnl|CDD|181323 PRK08250, PRK08250, glutamine amidotransferase; Provisional.
Length = 235
Score = 27.2 bits (61), Expect = 0.88
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 31 SPATCRDMINYFGS-AEQAL 49
SP T R+ YF S AEQ L
Sbjct: 57 SPRTTREECPYFDSKAEQRL 76
>gnl|CDD|184100 PRK13509, PRK13509, transcriptional repressor UlaR; Provisional.
Length = 251
Score = 27.3 bits (61), Expect = 1.0
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 13 LTDDQKISWLRLIRSDNISPATCRDMIN 40
L ++ ++I ISPAT R IN
Sbjct: 14 LAQLGFVTVEKVIERLGISPATARRDIN 41
>gnl|CDD|130852 TIGR01792, urease_alph, urease, alpha subunit. This model
describes the urease alpha subunit UreC (designated beta
or B chain, UreB in Helicobacter species). Accessory
proteins for incorporation of the nickel cofactor are
usually found in addition to the urease alpha, beta, and
gamma subunits. The trusted cutoff is set above the
scores of many reported fragments and of a putative
second urease alpha chain in Streptomyces coelicolor.
Length = 567
Score = 27.0 bits (60), Expect = 1.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 1 MKKM-NPLKGGVSLTDDQKISWLRLIRSDNISPATCRDMINYFGSAE 46
MKK PL G D+ ++ R + I+PA + +Y GS E
Sbjct: 381 MKKQRGPLPGDSPGNDNNRV--KRYVAKYTINPAITHGISDYIGSIE 425
>gnl|CDD|178682 PLN03137, PLN03137, ATP-dependent DNA helicase; Q4-like;
Provisional.
Length = 1195
Score = 26.8 bits (59), Expect = 1.3
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 46 EQALEMIPELAQRGAVY-----AGKRAFVQKNQQK 75
E+ E + E + A Y +RAFVQK K
Sbjct: 694 EKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSK 728
>gnl|CDD|163340 TIGR03591, polynuc_phos, polyribonucleotide nucleotidyltransferase.
Members of this protein family are polyribonucleotide
nucleotidyltransferase, also called polynucleotide
phosphorylase. Some members have been shown also to have
additional functions as guanosine pentaphosphate
synthetase and as poly(A) polymerase (see model
TIGR02696 for an exception clade, within this family).
Length = 684
Score = 25.5 bits (57), Expect = 3.0
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 44 SAEQALEMIPELAQR---GAVYAGK 65
+AE A++MI + G +Y GK
Sbjct: 601 AAEAAIKMIEGITAEPEVGKIYEGK 625
>gnl|CDD|129757 TIGR00674, dapA, dihydrodipicolinate synthase. Dihydrodipicolinate
synthase is a homotetrameric enzyme of lysine
biosynthesis. E. coli has several paralogs closely
related to dihydrodipicoline synthase (DapA), as well as
the more distant N-acetylneuraminate lyase. In
Pyrococcus horikoshii, the bidirectional best hit with
E. coli is to an uncharacterized paralog of DapA, not
DapA itself, and it is omitted from the seed. The
putative members from the Chlamydias (pathogens with a
parasitic metabolism) are easily the most divergent
members of the multiple alignment.
Length = 285
Score = 25.4 bits (56), Expect = 3.0
Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 29 NISPATCRDMINYF--GSAEQALEM 51
N++P ++M+N G +A E+
Sbjct: 205 NVAPKLMKEMVNNALEGDFAEAREI 229
>gnl|CDD|162696 TIGR02091, glgC, glucose-1-phosphate adenylyltransferase. This
enzyme, glucose-1-phosphate adenylyltransferase, is also
called ADP-glucose pyrophosphorylase. The plant form is
an alpha2,beta2 heterodimer, allosterically regulated in
plants. Both subunits are homologous and included in
this model. In bacteria, both homomeric forms of GlgC
and more active heterodimers of GlgC and GlgD have been
described. This model describes the GlgC subunit only.
This enzyme appears in variants of glycogen synthesis
pathways that use ADP-glucose, rather than UDP-glucose
as in animals.
Length = 361
Score = 25.3 bits (56), Expect = 3.8
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 9/40 (22%)
Query: 24 LIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYA 63
L+ D P + D FG ++IP + G+V A
Sbjct: 204 LLEEDADDPESSHD----FGK-----DIIPRALEEGSVQA 234
>gnl|CDD|162847 TIGR02412, pepN_strep_liv, aminopeptidase N, Streptomyces lividans
type. This family is a subset of the members of the
zinc metallopeptidase family M1 (pfam01433), with a
single member characterized in Streptomyces lividans 66
and designated aminopeptidase N. The spectrum of
activity may differ somewhat from the aminopeptidase N
clade of E. coli and most other Proteobacteria, well
separated phylogenetically within the M1 family. The M1
family also includes leukotriene A-4
hydrolase/aminopeptidase (with a bifunctional active
site).
Length = 831
Score = 25.1 bits (55), Expect = 4.6
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 21 WLRLIRSDNISPATCRDMINYFGSAEQALEMIP 53
W +L+ +D + + R +I F EQAL +
Sbjct: 723 WQKLVTTDALPNSKQRAIIEGFWQPEQALLLAA 755
>gnl|CDD|180494 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 24.9 bits (55), Expect = 5.4
Identities = 9/25 (36%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 38 MINYFGSAEQALEMIPELAQRGAVY 62
++ G+ + AL+M+ ELA+ G +Y
Sbjct: 167 EVD--GNFDDALDMVVELAKEGKIY 189
>gnl|CDD|163337 TIGR03586, PseI, pseudaminic acid synthase.
Length = 327
Score = 24.6 bits (54), Expect = 6.6
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 40 NYFGSAEQALEMIPELAQRGA 60
N+ GS E+AL MI GA
Sbjct: 11 NHNGSLERALAMIEAAKAAGA 31
>gnl|CDD|182843 PRK10925, PRK10925, superoxide dismutase; Provisional.
Length = 206
Score = 24.1 bits (52), Expect = 7.6
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 41 YFGSAEQALEMIPELA---------QRGAVYAGKRAFVQKN 72
Y +A ALE +PE A + + A K+ ++ N
Sbjct: 35 YVNNANAALESLPEFANLPVEELITKLDQLPADKKTVLRNN 75
>gnl|CDD|117577 pfam09011, DUF1898, Domain of unknown function (DUF1898). This
domain is predominantly found in Maelstrom homolog
proteins. It has no known function.
Length = 164
Score = 24.3 bits (52), Expect = 7.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 48 ALEMIPELAQRGAVYAGKR 66
AL+ IPEL +RG AG
Sbjct: 15 ALDKIPELRRRGLPVAGVA 33
>gnl|CDD|164866 PHA01751, PHA01751, hypothetical protein.
Length = 110
Score = 23.8 bits (51), Expect = 9.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 40 NYFGSAEQALEMIPELAQRGAVYAGKR 66
N FG A++ I EL QRG +Y R
Sbjct: 9 NIFGVVRIAIDKIRELEQRGQIYGLSR 35
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.317 0.130 0.371
Gapped
Lambda K H
0.267 0.0801 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,237,587
Number of extensions: 61791
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 172
Number of HSP's successfully gapped: 22
Length of query: 77
Length of database: 5,994,473
Length adjustment: 47
Effective length of query: 30
Effective length of database: 4,978,897
Effective search space: 149366910
Effective search space used: 149366910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (22.9 bits)