RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780303|ref|YP_003064716.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
         (77 letters)



>d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease)
          {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 105

 Score = 26.0 bits (57), Expect = 0.89
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 13 LTDDQKISWLRLIRSDN------ISPATCRDMINYFGSAEQALEMIPE 54
          LT +Q I    L+ +D       +      + I  +G   +AL+ +  
Sbjct: 1  LTREQLIDIAILVGTDYNEGVKGVGVKKALNYIKTYGDIFRALKALKV 48


>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 24.3 bits (52), Expect = 2.8
 Identities = 4/13 (30%), Positives = 8/13 (61%)

Query: 4   MNPLKGGVSLTDD 16
           + P + G+ L +D
Sbjct: 266 LAPGRSGIDLNND 278


>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain
          {Escherichia coli [TaxId: 562]}
          Length = 56

 Score = 24.3 bits (53), Expect = 3.1
 Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 2/35 (5%)

Query: 20 SWLRLIRSDNISPATCRDMINYFGSAEQALEMIPE 54
          S L  I    + P   + ++ Y G  +       E
Sbjct: 2  SSLETIE--GVGPKRRQMLLKYMGGLQGLRNASVE 34


>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 24.0 bits (51), Expect = 3.3
 Identities = 10/38 (26%), Positives = 13/38 (34%)

Query: 21  WLRLIRSDNISPATCRDMINYFGSAEQALEMIPELAQR 58
           +   +R  N+     RD    F    Q L   P LA  
Sbjct: 305 FFDELRDPNVKLPNGRDTPALFNFTTQELSSNPPLATI 342


>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase
          {Bacteriophage RB69 [TaxId: 12353]}
          Length = 528

 Score = 23.4 bits (49), Expect = 4.9
 Identities = 7/50 (14%), Positives = 14/50 (28%)

Query: 24 LIRSDNISPATCRDMINYFGSAEQALEMIPELAQRGAVYAGKRAFVQKNQ 73
          +IR  NISP T           +    +    +   +       + +   
Sbjct: 44 IIRQVNISPETIAGTFKVAPLHDYINAVAERPSDVYSCSPNGMMYYKDRD 93


>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 529

 Score = 23.3 bits (48), Expect = 5.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 36 RDMINYFGSAEQALEMIPELAQ 57
           ++INY   AE A   IPEL +
Sbjct: 3  VNLINYQDDAELATRAIPELTK 24


>d1ywfa1 c.45.1.5 (A:4-275) Phosphotyrosine protein phosphatase
          PtpB {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 272

 Score = 23.6 bits (50), Expect = 5.2
 Identities = 5/20 (25%), Positives = 7/20 (35%)

Query: 18 KISWLRLIRSDNISPATCRD 37
           +   RL RS  +S      
Sbjct: 18 ALRPGRLFRSSELSRLDDAG 37


>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis
          protein SpsE, N-terminal domain {Bacillus subtilis
          [TaxId: 1423]}
          Length = 295

 Score = 23.1 bits (48), Expect = 6.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 39 INYFGSAEQALEMIPELAQRGA 60
          IN+ G  +QA  +I   A+ GA
Sbjct: 24 INHDGKLDQAFALIDAAAEAGA 45


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0433    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 272,312
Number of extensions: 10324
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 13
Length of query: 77
Length of database: 2,407,596
Length adjustment: 44
Effective length of query: 33
Effective length of database: 1,803,476
Effective search space: 59514708
Effective search space used: 59514708
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.6 bits)