Query         gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 34
No_of_seqs    116 out of 901
Neff          4.5 
Searched_HMMs 33803
Date          Wed Jun  1 11:56:13 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780304.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2nx2_A Hypothetical protein Y  96.6  0.0025 7.4E-08   37.6   4.3   31    3-34     82-112 (181)
  2 >1xrh_A Ureidoglycolate dehydr  23.9      70  0.0021   16.2   2.9   27    2-28     60-88  (114)
  3 >2glx_A 1,5-anhydro-D-fructose  22.4      80  0.0024   15.9   3.0   31    4-34     62-96  (122)
  4 >2fp4_A Succinyl-COA ligase [G   9.6 1.9E+02  0.0055   14.1   3.0   25   10-34     81-105 (130)
  5 >2bhw_A Chlorophyll A-B bindin   9.0      94  0.0028   15.5   0.4   11    1-11     25-35  (37)
  6 >2dc1_A L-aspartate dehydrogen   8.9   2E+02  0.0059   14.0   2.8   32    3-34     49-84  (133)
  7 >1z2z_A Probable tRNA pseudour   8.5 2.1E+02  0.0062   13.9   2.5   27    4-30     51-78  (99)
  8 >3e82_A Putative oxidoreductas   7.5 2.3E+02  0.0069   13.6   3.0   27    8-34     75-101 (127)
  9 >3c1a_A Putative oxidoreductas   7.4 2.4E+02   0.007   13.6   3.1   27    8-34     77-103 (170)
 10 >3i23_A Oxidoreductase, GFO/ID   7.0 2.5E+02  0.0074   13.5   3.0   26    9-34     74-99  (125)

No 1  
>>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:)
Probab=96.62  E-value=0.0025  Score=37.59  Aligned_cols=31  Identities=6%  Similarity=0.004  Sum_probs=28.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             73881089899999999998399599706998
Q gi|254780304|r    3 GGLDCLYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         3 ~GiD~iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .+++..||++|+.++++|+++ |.++||++++
T Consensus        82 ~~~~~~~~~~~r~~~~~i~~~-~~~vs~~~~~  112 (181)
T 2nx2_A           82 YEQEKNWKEPNKEQYEAVLAQ-ADYEASLTHR  112 (181)
T ss_dssp             BCTTTTSCHHHHHHHHHHHHH-CSEEEESSSS
T ss_pred             HHHHCCCCHHHHHHHHHHHHH-CCEEEEECCC
T ss_conf             313007998999999999973-8878971558


No 2  
>>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} (A:1-64,A:302-351)
Probab=23.91  E-value=70  Score=16.17  Aligned_cols=27  Identities=26%  Similarity=0.538  Sum_probs=21.9

Q ss_pred             CCCCC--CCCCHHHHHHHHHHHHHCCEEE
Q ss_conf             87388--1089899999999998399599
Q gi|254780304|r    2 AGGLD--CLYPPENRNLLEEIWDNGGIAI   28 (34)
Q Consensus         2 ~~GiD--~iYP~~n~~L~~~I~~~gG~li   28 (34)
                      .+++|  +.||-++..+..+-.+.+|.-|
T Consensus        60 ~G~IN~~~~~pg~~~~~~~~~~~~~g~~~   88 (114)
T 1xrh_A           60 KGGTNNQVYYPGQDQDIKQRKAAVEGIEI   88 (114)
T ss_dssp             TTSSCSCCCCTTHHHHHHHHHHHHHCEEE
T ss_pred             CCCCCCCEECCCCHHHHHHHHHHHCCCCC
T ss_conf             59988844689937999999987079773


No 3  
>>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} (A:1-122)
Probab=22.36  E-value=80  Score=15.88  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             CCCCCC----CHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             388108----9899999999998399599706998
Q gi|254780304|r    4 GLDCLY----PPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         4 GiD~iY----P~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .+|.++    |..|.....+.++.|-.++.|.|++
T Consensus        62 ~id~v~i~~~~~~~~~~~~~al~~g~~v~~ekP~~   96 (122)
T 2glx_A           62 DVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLA   96 (122)
T ss_dssp             TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHCCCCCHHHCCCCCH
T ss_conf             98889995442332001211101221000343211


No 4  
>>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (A:1-130)
Probab=9.59  E-value=1.9e+02  Score=14.10  Aligned_cols=25  Identities=24%  Similarity=0.215  Sum_probs=22.0

Q ss_pred             CHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             9899999999998399599706998
Q gi|254780304|r   10 PPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus        10 P~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      |..|.....+.++.|=-++.|.|++
T Consensus        81 ~~~~~~~~~~~l~~g~~v~~ekP~~  105 (130)
T 2fp4_A           81 PPFAAAAINEAIDAEVPLVVCITEG  105 (130)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred             CHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             0345788988654467789991489


No 5  
>>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* (A:124-160)
Probab=9.04  E-value=94  Score=15.53  Aligned_cols=11  Identities=36%  Similarity=0.618  Sum_probs=7.7

Q ss_pred             CCCCCCCCCCH
Q ss_conf             98738810898
Q gi|254780304|r    1 MAGGLDCLYPP   11 (34)
Q Consensus         1 l~~GiD~iYP~   11 (34)
                      ++-++|..||-
T Consensus        25 lge~~d~lYPG   35 (37)
T 2bhw_A           25 LGEVVDPLYPG   35 (37)
T ss_dssp             TEECSSSSCCC
T ss_pred             CCCCCCCCCCC
T ss_conf             67656677889


No 6  
>>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} (A:1-111,A:215-236)
Probab=8.93  E-value=2e+02  Score=13.96  Aligned_cols=32  Identities=16%  Similarity=0.041  Sum_probs=25.7

Q ss_pred             CCCCCCC----CHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             7388108----9899999999998399599706998
Q gi|254780304|r    3 GGLDCLY----PPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         3 ~GiD~iY----P~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      ..+|.++    |..|.++..+.+++|=-+++|-|+.
T Consensus        49 ~~~DvVvi~t~~~~h~~~~~~al~~Gk~Vi~eKP~~   84 (133)
T 2dc1_A           49 REMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGA   84 (133)
T ss_dssp             SCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCH
T ss_conf             897199993686357999999872488899980415


No 7  
>>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei} (A:293-391)
Probab=8.53  E-value=2.1e+02  Score=13.88  Aligned_cols=27  Identities=7%  Similarity=0.273  Sum_probs=21.0

Q ss_pred             CCCCCCCHH-HHHHHHHHHHHCCEEEEE
Q ss_conf             388108989-999999999839959970
Q gi|254780304|r    4 GLDCLYPPE-NRNLLEEIWDNGGIAISE   30 (34)
Q Consensus         4 GiD~iYP~~-n~~L~~~I~~~gG~liSE   30 (34)
                      |-+..||.. -.+++++|++..|+=.+.
T Consensus        51 G~~~~~p~~~~ge~y~~iL~~~gl~~~~   78 (99)
T 1z2z_A           51 GYNTEFASGIPGEIENGVLKELGVSLEG   78 (99)
T ss_dssp             SSSCCCCCSHHHHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCHHH
T ss_conf             6787577753899999999874898555


No 8  
>>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127)
Probab=7.54  E-value=2.3e+02  Score=13.65  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=23.1

Q ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             089899999999998399599706998
Q gi|254780304|r    8 LYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         8 iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .-+..|...+.+.+++|--++.|-|++
T Consensus        75 t~~~~h~~~~~~~~~~gk~v~~EKP~~  101 (127)
T 3e82_A           75 SPNATHAPLARLALNAGKHVVVDKPFT  101 (127)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEECSCSC
T ss_pred             CCHHHHCCCCCCCCCCCCHHHCCCCCC
T ss_conf             313320012211233330000144532


No 9  
>>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} (A:1-130,A:276-315)
Probab=7.40  E-value=2.4e+02  Score=13.61  Aligned_cols=27  Identities=15%  Similarity=0.226  Sum_probs=23.5

Q ss_pred             CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             089899999999998399599706998
Q gi|254780304|r    8 LYPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         8 iYP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      .-+..|.+++.+.++.|=-++.|.|+.
T Consensus        77 tp~~~H~e~a~~al~aGkhVl~EKPla  103 (170)
T 3c1a_A           77 TPPATHAEITLAAIASGKAVLVEKPLT  103 (170)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESSSC
T ss_pred             CCCCCCCCCCCCCCCCCCHHHCCCCCC
T ss_conf             330012232100002331101254532


No 10 
>>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A (A:1-125)
Probab=6.96  E-value=2.5e+02  Score=13.50  Aligned_cols=26  Identities=23%  Similarity=0.224  Sum_probs=23.0

Q ss_pred             CCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf             89899999999998399599706998
Q gi|254780304|r    9 YPPENRNLLEEIWDNGGIAISEIPFG   34 (34)
Q Consensus         9 YP~~n~~L~~~I~~~gG~liSE~P~G   34 (34)
                      -+..|.+++.+.++.|--++.|-|++
T Consensus        74 ~~~~h~~~~~~al~~G~~V~~EKP~~   99 (125)
T 3i23_A           74 PAHTHYDLAKQAILAGKSVIVEKPFC   99 (125)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEECSCSC
T ss_pred             CCHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             80245689999998499087407731


Done!