Query gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62] Match_columns 34 No_of_seqs 116 out of 901 Neff 4.5 Searched_HMMs 33803 Date Wed Jun 1 11:56:13 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780304.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2nx2_A Hypothetical protein Y 96.6 0.0025 7.4E-08 37.6 4.3 31 3-34 82-112 (181) 2 >1xrh_A Ureidoglycolate dehydr 23.9 70 0.0021 16.2 2.9 27 2-28 60-88 (114) 3 >2glx_A 1,5-anhydro-D-fructose 22.4 80 0.0024 15.9 3.0 31 4-34 62-96 (122) 4 >2fp4_A Succinyl-COA ligase [G 9.6 1.9E+02 0.0055 14.1 3.0 25 10-34 81-105 (130) 5 >2bhw_A Chlorophyll A-B bindin 9.0 94 0.0028 15.5 0.4 11 1-11 25-35 (37) 6 >2dc1_A L-aspartate dehydrogen 8.9 2E+02 0.0059 14.0 2.8 32 3-34 49-84 (133) 7 >1z2z_A Probable tRNA pseudour 8.5 2.1E+02 0.0062 13.9 2.5 27 4-30 51-78 (99) 8 >3e82_A Putative oxidoreductas 7.5 2.3E+02 0.0069 13.6 3.0 27 8-34 75-101 (127) 9 >3c1a_A Putative oxidoreductas 7.4 2.4E+02 0.007 13.6 3.1 27 8-34 77-103 (170) 10 >3i23_A Oxidoreductase, GFO/ID 7.0 2.5E+02 0.0074 13.5 3.0 26 9-34 74-99 (125) No 1 >>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:) Probab=96.62 E-value=0.0025 Score=37.59 Aligned_cols=31 Identities=6% Similarity=0.004 Sum_probs=28.2 Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 73881089899999999998399599706998 Q gi|254780304|r 3 GGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 3 ~GiD~iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .+++..||++|+.++++|+++ |.++||++++ T Consensus 82 ~~~~~~~~~~~r~~~~~i~~~-~~~vs~~~~~ 112 (181) T 2nx2_A 82 YEQEKNWKEPNKEQYEAVLAQ-ADYEASLTHR 112 (181) T ss_dssp BCTTTTSCHHHHHHHHHHHHH-CSEEEESSSS T ss_pred HHHHCCCCHHHHHHHHHHHHH-CCEEEEECCC T ss_conf 313007998999999999973-8878971558 No 2 >>1xrh_A Ureidoglycolate dehydrogenase; structural genomics, protein structure initiative, NYSGXRC, ALLD, GLXB8, B0517, PSI; 2.25A {Escherichia coli} (A:1-64,A:302-351) Probab=23.91 E-value=70 Score=16.17 Aligned_cols=27 Identities=26% Similarity=0.538 Sum_probs=21.9 Q ss_pred CCCCC--CCCCHHHHHHHHHHHHHCCEEE Q ss_conf 87388--1089899999999998399599 Q gi|254780304|r 2 AGGLD--CLYPPENRNLLEEIWDNGGIAI 28 (34) Q Consensus 2 ~~GiD--~iYP~~n~~L~~~I~~~gG~li 28 (34) .+++| +.||-++..+..+-.+.+|.-| T Consensus 60 ~G~IN~~~~~pg~~~~~~~~~~~~~g~~~ 88 (114) T 1xrh_A 60 KGGTNNQVYYPGQDQDIKQRKAAVEGIEI 88 (114) T ss_dssp TTSSCSCCCCTTHHHHHHHHHHHHHCEEE T ss_pred CCCCCCCEECCCCHHHHHHHHHHHCCCCC T ss_conf 59988844689937999999987079773 No 3 >>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} (A:1-122) Probab=22.36 E-value=80 Score=15.88 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=25.6 Q ss_pred CCCCCC----CHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 388108----9899999999998399599706998 Q gi|254780304|r 4 GLDCLY----PPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 4 GiD~iY----P~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .+|.++ |..|.....+.++.|-.++.|.|++ T Consensus 62 ~id~v~i~~~~~~~~~~~~~al~~g~~v~~ekP~~ 96 (122) T 2glx_A 62 DVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLA 96 (122) T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSC T ss_pred CCCEEEEECCCCCCHHHHHHHCCCCCHHHCCCCCH T ss_conf 98889995442332001211101221000343211 No 4 >>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} (A:1-130) Probab=9.59 E-value=1.9e+02 Score=14.10 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=22.0 Q ss_pred CHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 9899999999998399599706998 Q gi|254780304|r 10 PPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 10 P~~n~~L~~~I~~~gG~liSE~P~G 34 (34) |..|.....+.++.|=-++.|.|++ T Consensus 81 ~~~~~~~~~~~l~~g~~v~~ekP~~ 105 (130) T 2fp4_A 81 PPFAAAAINEAIDAEVPLVVCITEG 105 (130) T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCC T ss_pred CHHHHHHHHHHHHCCCCEEEEECCC T ss_conf 0345788988654467789991489 No 5 >>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A* (A:124-160) Probab=9.04 E-value=94 Score=15.53 Aligned_cols=11 Identities=36% Similarity=0.618 Sum_probs=7.7 Q ss_pred CCCCCCCCCCH Q ss_conf 98738810898 Q gi|254780304|r 1 MAGGLDCLYPP 11 (34) Q Consensus 1 l~~GiD~iYP~ 11 (34) ++-++|..||- T Consensus 25 lge~~d~lYPG 35 (37) T 2bhw_A 25 LGEVVDPLYPG 35 (37) T ss_dssp TEECSSSSCCC T ss_pred CCCCCCCCCCC T ss_conf 67656677889 No 6 >>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} (A:1-111,A:215-236) Probab=8.93 E-value=2e+02 Score=13.96 Aligned_cols=32 Identities=16% Similarity=0.041 Sum_probs=25.7 Q ss_pred CCCCCCC----CHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 7388108----9899999999998399599706998 Q gi|254780304|r 3 GGLDCLY----PPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 3 ~GiD~iY----P~~n~~L~~~I~~~gG~liSE~P~G 34 (34) ..+|.++ |..|.++..+.+++|=-+++|-|+. T Consensus 49 ~~~DvVvi~t~~~~h~~~~~~al~~Gk~Vi~eKP~~ 84 (133) T 2dc1_A 49 REMDVAVEAASQQAVKDYAEKILKAGIDLIVLSTGA 84 (133) T ss_dssp SCCSEEEECSCHHHHHHHHHHHHHTTCEEEESCGGG T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCH T ss_conf 897199993686357999999872488899980415 No 7 >>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei} (A:293-391) Probab=8.53 E-value=2.1e+02 Score=13.88 Aligned_cols=27 Identities=7% Similarity=0.273 Sum_probs=21.0 Q ss_pred CCCCCCCHH-HHHHHHHHHHHCCEEEEE Q ss_conf 388108989-999999999839959970 Q gi|254780304|r 4 GLDCLYPPE-NRNLLEEIWDNGGIAISE 30 (34) Q Consensus 4 GiD~iYP~~-n~~L~~~I~~~gG~liSE 30 (34) |-+..||.. -.+++++|++..|+=.+. T Consensus 51 G~~~~~p~~~~ge~y~~iL~~~gl~~~~ 78 (99) T 1z2z_A 51 GYNTEFASGIPGEIENGVLKELGVSLEG 78 (99) T ss_dssp SSSCCCCCSHHHHHHHHHHHHTTCCGGG T ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCHHH T ss_conf 6787577753899999999874898555 No 8 >>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} (A:1-127) Probab=7.54 E-value=2.3e+02 Score=13.65 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=23.1 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .-+..|...+.+.+++|--++.|-|++ T Consensus 75 t~~~~h~~~~~~~~~~gk~v~~EKP~~ 101 (127) T 3e82_A 75 SPNATHAPLARLALNAGKHVVVDKPFT 101 (127) T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSCSC T ss_pred CCHHHHCCCCCCCCCCCCHHHCCCCCC T ss_conf 313320012211233330000144532 No 9 >>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase family, NAD-binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum ms-1} (A:1-130,A:276-315) Probab=7.40 E-value=2.4e+02 Score=13.61 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.5 Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 089899999999998399599706998 Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) .-+..|.+++.+.++.|=-++.|.|+. T Consensus 77 tp~~~H~e~a~~al~aGkhVl~EKPla 103 (170) T 3c1a_A 77 TPPATHAEITLAAIASGKAVLVEKPLT 103 (170) T ss_dssp SCGGGHHHHHHHHHHTTCEEEEESSSC T ss_pred CCCCCCCCCCCCCCCCCCHHHCCCCCC T ss_conf 330012232100002331101254532 No 10 >>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A (A:1-125) Probab=6.96 E-value=2.5e+02 Score=13.50 Aligned_cols=26 Identities=23% Similarity=0.224 Sum_probs=23.0 Q ss_pred CCHHHHHHHHHHHHHCCEEEEECCCC Q ss_conf 89899999999998399599706998 Q gi|254780304|r 9 YPPENRNLLEEIWDNGGIAISEIPFG 34 (34) Q Consensus 9 YP~~n~~L~~~I~~~gG~liSE~P~G 34 (34) -+..|.+++.+.++.|--++.|-|++ T Consensus 74 ~~~~h~~~~~~al~~G~~V~~EKP~~ 99 (125) T 3i23_A 74 PAHTHYDLAKQAILAGKSVIVEKPFC 99 (125) T ss_dssp CGGGHHHHHHHHHHTTCEEEECSCSC T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCC T ss_conf 80245689999998499087407731 Done!