Query gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 34
No_of_seqs 116 out of 901
Neff 4.5
Searched_HMMs 23785
Date Mon May 30 09:12:05 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780304.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3maj_A DNA processing chain A; 99.2 8.4E-12 3.5E-16 77.7 3.8 34 1-34 185-218 (382)
2 2glx_A 1,5-anhydro-D-fructose 6.6 1.8E+02 0.0077 13.4 3.0 27 8-34 70-96 (332)
3 2gqb_A Conserved hypothetical 4.4 2.1E+02 0.009 13.1 0.9 16 12-27 109-124 (130)
4 3fgx_A Rbstp2171; structural g 4.3 99 0.0042 14.7 -0.9 23 5-27 70-92 (114)
5 3ip3_A Oxidoreductase, putativ 4.3 2.7E+02 0.011 12.6 3.1 27 8-34 75-101 (337)
6 1ydw_A AX110P-like protein; st 4.2 2.7E+02 0.011 12.6 2.7 27 8-34 79-105 (362)
7 2h1i_A Carboxylesterase; struc 3.8 2.9E+02 0.012 12.4 3.7 31 4-34 175-207 (226)
8 1imo_A DNA ligase III; paralle 3.8 2.4E+02 0.01 12.8 0.8 21 12-32 30-50 (88)
9 3moi_A Probable dehydrogenase; 3.8 3E+02 0.012 12.4 3.1 26 9-34 73-98 (387)
10 3i23_A Oxidoreductase, GFO/IDH 3.6 3.1E+02 0.013 12.3 3.0 27 8-34 73-99 (349)
No 1
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=99.19 E-value=8.4e-12 Score=77.65 Aligned_cols=34 Identities=50% Similarity=0.897 Sum_probs=32.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 9873881089899999999998399599706998
Q gi|254780304|r 1 MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34 (34)
Q Consensus 1 l~~GiD~iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34)
||+|+|++||++|++|+++|++++|++|||||+|
T Consensus 185 l~~Gld~~yP~~n~~l~~~ii~~~GllISE~pp~ 218 (382)
T 3maj_A 185 LAGGHDKIYPAEHEDLLLDIIQTRGAAISEMPLG 218 (382)
T ss_dssp CSSCTTSCSSGGGHHHHHHHHHTTCEEEECSCTT
T ss_pred ECCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 5036773157520899999997097798716988
No 2
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=6.60 E-value=1.8e+02 Score=13.40 Aligned_cols=27 Identities=15% Similarity=0.106 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 089899999999998399599706998
Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34)
Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34)
.-|..|.++..+.++.|=.++.|-|++
T Consensus 70 tp~~~H~~~~~~al~~gk~v~~EKP~~ 96 (332)
T 2glx_A 70 TTNELHREQTLAAIRAGKHVLCEKPLA 96 (332)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSSSC
T ss_pred CCCHHHHHHHHHHHHCCCCEECCCCCH
T ss_conf 884465788999998699875367730
No 3
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=4.38 E-value=2.1e+02 Score=13.09 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHCCEE
Q ss_conf 9999999999839959
Q gi|254780304|r 12 ENRNLLEEIWDNGGIA 27 (34)
Q Consensus 12 ~n~~L~~~I~~~gG~l 27 (34)
-|+++.+++.+|||-+
T Consensus 109 Lhk~vm~kLa~NgG~v 124 (130)
T 2gqb_A 109 LHKQVMSKLVANGGKL 124 (130)
T ss_dssp HHHHHHHHHGGGSEEC
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999999908979
No 4
>3fgx_A Rbstp2171; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.90A {Bacillus stearothermophilus}
Probab=4.26 E-value=99 Score=14.69 Aligned_cols=23 Identities=17% Similarity=0.481 Sum_probs=17.1
Q ss_pred CCCCCCHHHHHHHHHHHHHCCEE
Q ss_conf 88108989999999999839959
Q gi|254780304|r 5 LDCLYPPENRNLLEEIWDNGGIA 27 (34)
Q Consensus 5 iD~iYP~~n~~L~~~I~~~gG~l 27 (34)
+|+|-|..-..|.+++-+.-|..
T Consensus 70 LD~i~pe~~~~L~~d~EEyPg~a 92 (114)
T 3fgx_A 70 FSCIVPEQEEELRQAAEEFPGLT 92 (114)
T ss_dssp HTTBCGGGHHHHHHHHHHSTTHH
T ss_pred HHHCCCCCHHHHHHHHHHCCCHH
T ss_conf 75057772899999998785275
No 5
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=4.26 E-value=2.7e+02 Score=12.61 Aligned_cols=27 Identities=22% Similarity=0.117 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 089899999999998399599706998
Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34)
Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34)
.-|..|.+++.+.+++|=.+++|-|++
T Consensus 75 tp~~~H~~~~~~al~~gk~Vl~EKP~a 101 (337)
T 3ip3_A 75 TVFSLNGKILLEALERKIHAFVEKPIA 101 (337)
T ss_dssp SSHHHHHHHHHHHHHTTCEEEECSSSC
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 886167999999998799699947854
No 6
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=4.23 E-value=2.7e+02 Score=12.60 Aligned_cols=27 Identities=15% Similarity=0.092 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 089899999999998399599706998
Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34)
Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34)
.-|..|.+++.+.++.|=-++.|-|++
T Consensus 79 tp~~~H~~~~~~al~aGkhVl~EKPla 105 (362)
T 1ydw_A 79 LPTSLHVEWAIKAAEKGKHILLEKPVA 105 (362)
T ss_dssp CCGGGHHHHHHHHHTTTCEEEECSSCS
T ss_pred CCCHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 882688999999997698599947810
No 7
>2h1i_A Carboxylesterase; structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics, MCSG, H; HET: MSE; 2.80A {Bacillus cereus atcc 14579} SCOP: c.69.1.14
Probab=3.81 E-value=2.9e+02 Score=12.42 Aligned_cols=31 Identities=13% Similarity=0.123 Sum_probs=19.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCEEEE--ECCCC
Q ss_conf 38810898999999999983995997--06998
Q gi|254780304|r 4 GLDCLYPPENRNLLEEIWDNGGIAIS--EIPFG 34 (34)
Q Consensus 4 GiD~iYP~~n~~L~~~I~~~gG~liS--E~P~G 34 (34)
--|.+.|.++.+-..+-+++.|+-++ +||.|
T Consensus 175 ~~D~~vp~~~~~~~~~~l~~~g~~~~~~~~~~G 207 (226)
T 2h1i_A 175 TNDPICSSAESEELKVLLENANANVTMHWENRG 207 (226)
T ss_dssp SSCSSSCHHHHHHHHHHHHTTTCEEEEEEESST
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 899825899999999999978998799998999
No 8
>1imo_A DNA ligase III; parallel beta sheet; HET: DNA; NMR {Homo sapiens} SCOP: c.15.1.2 PDB: 1in1_A*
Probab=3.81 E-value=2.4e+02 Score=12.82 Aligned_cols=21 Identities=14% Similarity=0.052 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHCCEEEEECC
Q ss_conf 999999999983995997069
Q gi|254780304|r 12 ENRNLLEEIWDNGGIAISEIP 32 (34)
Q Consensus 12 ~n~~L~~~I~~~gG~liSE~P 32 (34)
..+.|.+-|+++||.++-+|-
T Consensus 30 ~~~~L~r~i~a~GG~~~~~~~ 50 (88)
T 1imo_A 30 DFSRLRRYFVAFDGDLVQEFD 50 (88)
T ss_dssp THHHHHHHHHHHTCBCCCTTC
T ss_pred CHHHHHHHHHHCCCEEEEECC
T ss_conf 689999999982998852336
No 9
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=3.75 E-value=3e+02 Score=12.39 Aligned_cols=26 Identities=15% Similarity=0.038 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 89899999999998399599706998
Q gi|254780304|r 9 YPPENRNLLEEIWDNGGIAISEIPFG 34 (34)
Q Consensus 9 YP~~n~~L~~~I~~~gG~liSE~P~G 34 (34)
-|..|..+..+.++.|=-++.|-|++
T Consensus 73 p~~~H~~~~~~al~~gkhV~~EKPla 98 (387)
T 3moi_A 73 PHQFHCEHVVQASEQGLHIIVEKPLT 98 (387)
T ss_dssp CGGGHHHHHHHHHHTTCEEEECSCCC
T ss_pred CCHHHHHHHHHHHHHCCCEECCCCCC
T ss_conf 96789999999986189565378887
No 10
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=3.62 E-value=3.1e+02 Score=12.33 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHHHHHCCEEEEECCCC
Q ss_conf 089899999999998399599706998
Q gi|254780304|r 8 LYPPENRNLLEEIWDNGGIAISEIPFG 34 (34)
Q Consensus 8 iYP~~n~~L~~~I~~~gG~liSE~P~G 34 (34)
.-|..|..++.+.++.|=-++.|-|++
T Consensus 73 tp~~~H~~~~~~al~agkhV~~EKP~a 99 (349)
T 3i23_A 73 TPAHTHYDLAKQAILAGKSVIVEKPFC 99 (349)
T ss_dssp SCGGGHHHHHHHHHHTTCEEEECSCSC
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 871456788999998499187517742
Done!