RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
         (34 letters)



>2nx2_A Hypothetical protein YPSA; structural genomics, unknown
           function, PSI, protein structure initiative; 2.00A
           {Bacillus subtilis} (A:)
          Length = 181

 Score = 33.1 bits (75), Expect = 0.015
 Identities = 2/33 (6%), Positives = 8/33 (24%), Gaps = 1/33 (3%)

Query: 2   AGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34
               +  +   N+   E +        + +   
Sbjct: 81  FYEQEKNWKEPNKEQYEAVLAQADY-EASLTHR 112


>1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP
          elongation complex, transcription/DNA/RNA complex;
          2.10A {Enterobacteria phage T7}
          (D:280-450,D:529-539,D:780-839)
          Length = 242

 Score = 25.3 bits (55), Expect = 2.8
 Identities = 3/18 (16%), Positives = 6/18 (33%)

Query: 15 NLLEEIWDNGGIAISEIP 32
           +   I       + +IP
Sbjct: 57 AVANVITKWKHCPVEDIP 74


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.147    0.481 

Gapped
Lambda     K      H
   0.267   0.0557    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 302,398
Number of extensions: 6660
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32
Number of HSP's successfully gapped: 3
Length of query: 34
Length of database: 4,956,049
Length adjustment: 8
Effective length of query: 26
Effective length of database: 4,685,609
Effective search space: 121825834
Effective search space used: 121825834
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)