RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62] (34 letters) >2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} (A:) Length = 181 Score = 33.1 bits (75), Expect = 0.015 Identities = 2/33 (6%), Positives = 8/33 (24%), Gaps = 1/33 (3%) Query: 2 AGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34 + + N+ E + + + Sbjct: 81 FYEQEKNWKEPNKEQYEAVLAQADY-EASLTHR 112 >1msw_D DNA-directed RNA polymerase, bacteriophage T7 RNA; T7RNAP elongation complex, transcription/DNA/RNA complex; 2.10A {Enterobacteria phage T7} (D:280-450,D:529-539,D:780-839) Length = 242 Score = 25.3 bits (55), Expect = 2.8 Identities = 3/18 (16%), Positives = 6/18 (33%) Query: 15 NLLEEIWDNGGIAISEIP 32 + I + +IP Sbjct: 57 AVANVITKWKHCPVEDIP 74 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.147 0.481 Gapped Lambda K H 0.267 0.0557 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 302,398 Number of extensions: 6660 Number of successful extensions: 32 Number of sequences better than 10.0: 1 Number of HSP's gapped: 32 Number of HSP's successfully gapped: 3 Length of query: 34 Length of database: 4,956,049 Length adjustment: 8 Effective length of query: 26 Effective length of database: 4,685,609 Effective search space: 121825834 Effective search space used: 121825834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.4 bits)