RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus str. psy62] (34 letters) >3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris} Length = 382 Score = 34.9 bits (80), Expect = 0.005 Identities = 17/34 (50%), Positives = 23/34 (67%) Query: 1 MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34 +AGG D +YP E+ +LL +I G AISE+P G Sbjct: 185 LAGGHDKIYPAEHEDLLLDIIQTRGAAISEMPLG 218 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.147 0.481 Gapped Lambda K H 0.267 0.0576 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 345,484 Number of extensions: 7783 Number of successful extensions: 42 Number of sequences better than 10.0: 1 Number of HSP's gapped: 42 Number of HSP's successfully gapped: 1 Length of query: 34 Length of database: 5,693,230 Length adjustment: 8 Effective length of query: 26 Effective length of database: 5,499,278 Effective search space: 142981228 Effective search space used: 142981228 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.4 bits)