BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA
[Candidatus Liberibacter asiaticus str. psy62]
         (34 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780304|ref|YP_003064717.1| DNA protecting protein DprA [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 34

 Score = 71.6 bits (174), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/34 (100%), Positives = 34/34 (100%)

Query: 1  MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34
          MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG
Sbjct: 1  MAGGLDCLYPPENRNLLEEIWDNGGIAISEIPFG 34


>gi|254780978|ref|YP_003065391.1| aspartyl/glutamyl-tRNA amidotransferase subunit A [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 493

 Score = 23.1 bits (48), Expect = 0.94,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 15/27 (55%)

Query: 5   LDCLYPPENRNLLEEIWDNGGIAISEI 31
           LD   P     + +++WDNG + + ++
Sbjct: 96  LDGFRPHYESTVTQKLWDNGAVMLGKL 122


>gi|254780655|ref|YP_003065068.1| transketolase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 673

 Score = 20.4 bits (41), Expect = 6.7,   Method: Composition-based stats.
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query: 20  IWDNGGIAI 28
           +WDN GI+I
Sbjct: 194 LWDNNGISI 202


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.147    0.481 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,841
Number of Sequences: 1233
Number of extensions: 483
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 34
length of database: 328,796
effective HSP length: 8
effective length of query: 26
effective length of database: 318,932
effective search space:  8292232
effective search space used:  8292232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)