HHsearch alignment for GI: 254780305 and conserved domain: smart00550
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=93.18 E-value=0.18 Score=28.16 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHCCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9989999999858898---899999998299999999999999994179864798
Q gi|254780305|r 32 TQCERVRIKQSLNNVP---IHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG 83 (95)
Q Consensus 32 ~~~~~~~Il~~L~~~p---~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg 83 (95)
T Consensus 4 ~~~~eqkil~~L~~~g~~~~tA~~lak~lg~~Kk~vN~~LY~L~k~g~v~~~~~~ 58 (68)
T smart00550 4 QDSLEEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCKQGGT 58 (68)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCEECCCCC
T ss_conf 0079999999999748864039999999499899999999999974883106998