HHSEARCH alignment of GI: 254780305 and SCOP domain: d1j5ya1

Alignment

Probab=95.82  E-value=0.0059  Score=33.79  Aligned_cols=50  Identities=18%  Similarity=0.237  Sum_probs=43.8

Q ss_pred             HHHHHHHHC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHCCCCEE
Q ss_conf             999999858--89889999999829999999999999999417-986479868
Q gi|254780305|r   36 RVRIKQSLN--NVPIHIDDIIHHTGIEAPVVYLVLLELDLAGR-LCHHPEGKV   85 (95)
Q Consensus        36 ~~~Il~~L~--~~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~-i~~~pGg~v   85 (95)
                      +.+|+..|.  ..++++++|++..+++..+|..-+-+|+-.|. |.+.+|||+
T Consensus         9 ~~~Il~~L~~~~~~vs~~~La~~l~VS~~TI~rdi~~L~~~G~~I~~~~gGY~   61 (65)
T d1j5ya1           9 LKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYV   61 (65)
T ss_dssp             HHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEE
T ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCEE
T ss_conf             99999999985997859999999798999999999999987992799679888

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]