HHSEARCH alignment of GI: 254780305 and SCOP domain: d1okra_

Alignment
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=91.88  E-value=0.065  Score=28.16  Aligned_cols=55  Identities=9%  Similarity=0.077  Sum_probs=45.4

Q ss_pred             CCCHHHHHHHHHHCC-CCCCHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             999899999998588-988999999982----9999999999999999417986479868
Q gi|254780305|r   31 YTQCERVRIKQSLNN-VPIHIDDIIHHT----GIEAPVVYLVLLELDLAGRLCHHPEGKV   85 (95)
Q Consensus        31 ~~~~~~~~Il~~L~~-~p~~iD~l~~~t----gl~~~~v~~~LleLEL~G~i~~~pGg~v   85 (95)
                      ..+..|-.|+.+|-. +|+.+.+|+...    +|..++|..+|-.||=+|+|.|...|+-
T Consensus         4 ~lt~~E~~VM~~lW~~~~~t~~ei~~~l~~~~~~~~sTv~t~L~rL~~Kg~l~r~~~gr~   63 (120)
T d1okra_           4 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKI   63 (120)
T ss_dssp             CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTE
T ss_pred             CCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             979999999999985899789999999752128648769999999997898588734882


SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Penicillinase repressor
domain: Methicillin resistance regulatory protein MecI
species: Staphylococcus aureus [TaxId: 1280]