HHSEARCH alignment of GI: 254780305 and SCOP domain: d1s3ja_

Alignment

Probab=91.14  E-value=0.058  Score=28.43  Aligned_cols=54  Identities=11%  Similarity=0.159  Sum_probs=47.6

Q ss_pred             CCCCHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             7999899999998588-98899999998299999999999999994179864798
Q gi|254780305|r   30 EYTQCERVRIKQSLNN-VPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEG   83 (95)
Q Consensus        30 ~~~~~~~~~Il~~L~~-~p~~iD~l~~~tgl~~~~v~~~LleLEL~G~i~~~pGg   83 (95)
                      ...+..+-.||..|.. +++++.+|+..++++.+.++.++-.||=+|+|.+.+..
T Consensus        31 ~glt~~q~~iL~~l~~~~~~t~~~la~~~~i~~~~vs~~l~~L~~~glv~r~~~~   85 (143)
T d1s3ja_          31 QGVTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNT   85 (143)
T ss_dssp             TTCCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred             CCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEEC
T ss_conf             6979999999999997799899999999896988999999999973400131013

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]