RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780305|ref|YP_003064718.1| hypothetical protein
CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
         (95 letters)



>2qx2_A Sex pheromone staph-CAM373; structural genomics, PSI-2,
           protein structure initiative, midwest center for
           structural genomics, MCSG; 1.90A {Staphylococcus aureus
           subsp} (A:1-225)
          Length = 225

 Score = 25.5 bits (56), Expect = 2.9
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 35  ERVRIKQSLNNVPIHI 50
            R+R    L ++PIH 
Sbjct: 175 SRLRENDDLKDIPIHF 190


>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics,
          PSI-2, protein structure initiative, joint center for
          structural genomics, JCSG; 2.46A {Thermotoga maritima}
          (A:1-85)
          Length = 85

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 6/49 (12%), Positives = 15/49 (30%)

Query: 36 RVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLVLLELDLAGRLCHHPEGK 84
            RI + +   P+   ++    G+    V  +       G +    +  
Sbjct: 22 ISRILKRIXKSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVEEKDSP 70


>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF;
           1.85A {Campylobacter jejuni} PDB: 2p56_A (A:)
          Length = 288

 Score = 24.0 bits (52), Expect = 8.0
 Identities = 7/40 (17%), Positives = 12/40 (30%)

Query: 4   PQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSL 43
             I  NF       N   +I +T         + ++K   
Sbjct: 242 ININNNFTLENKHNNSINDILLTDNTPGVSFYKNQLKADN 281


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 787,882
Number of extensions: 30710
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 4
Length of query: 95
Length of database: 4,956,049
Length adjustment: 55
Effective length of query: 40
Effective length of database: 3,096,774
Effective search space: 123870960
Effective search space used: 123870960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)