RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780305|ref|YP_003064718.1| hypothetical protein
CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
         (95 letters)



>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
            [TaxId: 274]}
          Length = 1504

 Score = 23.6 bits (50), Expect = 4.7
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 35   ERVRIKQSLNNVPIHIDDIIHHTGIEAPVVYLV 67
            + V   Q L    I    ++   G EA   YLV
Sbjct: 1316 DYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLV 1348


>d1gwma_ b.18.1.19 (A:) Non-catalytic protein 1, Ncp1 {Piromyces
           equi [TaxId: 99929]}
          Length = 153

 Score = 22.7 bits (48), Expect = 8.6
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 44  NNVPIHIDDIIHHTG 58
           N   I I +++H TG
Sbjct: 121 NGDRIWIKNLVHSTG 135


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0636    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 374,779
Number of extensions: 15021
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 22
Number of HSP's successfully gapped: 5
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)