BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780305|ref|YP_003064718.1| hypothetical protein
CLIBASIA_00950 [Candidatus Liberibacter asiaticus str. psy62]
         (95 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780305|ref|YP_003064718.1| hypothetical protein CLIBASIA_00950 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 95

 Score =  196 bits (499), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60
          MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE
Sbjct: 1  MVHPQIEQNFFSSQSDTNHTKNINITHYPEYTQCERVRIKQSLNNVPIHIDDIIHHTGIE 60

Query: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95
          APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ
Sbjct: 61 APVVYLVLLELDLAGRLCHHPEGKVSLTMHLPSPQ 95


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 23.5 bits (49), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 53  IIHHTGIEAPVVYLVLLELDLAGRLCHHPEGKVSLTMHLP 92
           I + T ++  +V  V  E DL+  +C HP  K+  T  +P
Sbjct: 290 IANQTNVKIALVCDVKAE-DLSKTMCSHPLKKLGYTFSVP 328


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1398

 Score = 22.7 bits (47), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 5/46 (10%)

Query: 6   IEQNFFSSQSDTNHTKNINITHYPE-----YTQCERVRIKQSLNNV 46
           + QN   +Q D N  K + ITH  +     Y+   RV  + +L+++
Sbjct: 800 VAQNCVVNQVDCNTKKGLTITHIVDSGQVVYSLGSRVLGRTALDDI 845


>gi|254781181|ref|YP_003065594.1| hypothetical protein CLIBASIA_05440 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 85

 Score = 21.9 bits (45), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 28 YPEYTQCERVRIKQSLNNVPIHIDD 52
          YPE  Q    R K+  N+V IH+ D
Sbjct: 61 YPEQRQELAKRYKEKYNDVLIHLPD 85


>537021.9.peg.410_1 
          Length = 952

 Score = 21.6 bits (44), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 7/10 (70%), Positives = 10/10 (100%)

Query: 58  GIEAPVVYLV 67
           G+E+PVV+LV
Sbjct: 582 GLESPVVFLV 591


>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 573

 Score = 20.4 bits (41), Expect = 6.9,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 10/19 (52%)

Query: 75  GRLCHHPEGKVSLTMHLPS 93
           GRLC H  GK     HL +
Sbjct: 133 GRLCDHIRGKGLNISHLKA 151


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.136    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,539
Number of Sequences: 1233
Number of extensions: 2370
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 95
length of database: 328,796
effective HSP length: 60
effective length of query: 35
effective length of database: 254,816
effective search space:  8918560
effective search space used:  8918560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 31 (16.5 bits)