HHsearch alignment for GI: 254780306 and conserved domain: COG0353
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair].
Probab=96.73 E-value=0.041 Score=34.89 Aligned_cols=86 Identities=27% Similarity=0.435 Sum_probs=54.1
Q ss_pred EEEECCHHHHHHHHHHH--CCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCC--EEEEC
Q ss_conf 89977904787788750--899899994251100786557867666744068877654899999999987099--89994
Q gi|254780306|r 3 VIIVESPAKAKTISKYL--GSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSST--ILILA 78 (837)
Q Consensus 3 LvIvEsP~kak~I~~~L--g~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~--~iilA 78 (837)
T Consensus 82 icVVe~p~Dv~a~E~~~~f~G~YhVL--~G~lspl----~gigpe~-------------l~i~~L~~Rl~~~~~~EvIlA 142 (198)
T COG0353 82 LCVVEEPKDVLALEKTGEFRGLYHVL--GGLLSPL----DGIGPED-------------LNIDELLQRLAEGSIKEVILA 142 (198)
T ss_pred EEEECCHHHHHHHHHHCCCCEEEEEE--CCCCCCC----CCCCCCC-------------CCHHHHHHHHHCCCCCEEEEE
T ss_conf 89986649999999745257278884--5733734----5899101-------------267999999846997559996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 699702579999999997551257887169999
Q gi|254780306|r 79 TDPDREGEAISWHVLDVLRQKNLIEKTKIQRVS 111 (837)
Q Consensus 79 tD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~ 111 (837)
T Consensus 143 tnpTvEGeaTA~YI~~~l~~~----~ikvtRlA 171 (198)
T COG0353 143 TNPTVEGEATALYIARLLKPL----GLKVTRLA 171 (198)
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCEEEEEE
T ss_conf 589864368999999997535----97178776