HHsearch alignment for GI: 254780306 and conserved domain: COG0550

>COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=1333.58  Aligned_cols=550  Identities=50%  Similarity=0.820  Sum_probs=518.3

Q ss_pred             CCEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCC---CCCCCCCCCC-CCEEEEECCC-HHHHHHHHHHHHHHCCEE
Q ss_conf             9189977904787788750899899994251100786---5578676667-4406887765-489999999998709989
Q gi|254780306|r    1 MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPA---KKGSVLPEKE-FEMIWNIDPS-SQKHLQNIIHAVKSSTIL   75 (837)
Q Consensus         1 M~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~---~~~~v~~~~~-f~p~y~v~~~-~kk~~~~i~~~~k~a~~i   75 (837)
T Consensus         1 ~~LiIvEsPskAk~Ia~~Lg~~~~V~as~GHi~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~v~~lk~~ak~ad~v   80 (570)
T COG0550           1 KRLIIVESPSKAKTIAKYLGKGYVVTASVGHLRDLPFPEEYKGWVDVDLPIFEPKYIIKPGKKKKVVKKLKKLAKKADEV   80 (570)
T ss_pred             CEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCEE
T ss_conf             95999927789999998729994999756632137870211477577665566200215224579999999975549989


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf             99469970257999999999755125788716999980379899999986226469899999999999898740113789
Q gi|254780306|r   76 ILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPI  155 (837)
Q Consensus        76 ilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~  155 (837)
T Consensus        81 ~lAtD~DREGE~I~~~i~~~l~~~~---~~~~~R~~F~eiT~~aI~~A~~~p~~id~~lv~A~~aR~~lD~lvG~~lSr~  157 (570)
T COG0550          81 YLATDPDREGEAIGWHILEVLKLKN---PSKVKRVVFSEITKKAILSAFKNPREIDMNLVDAQLARRILDRLVGYNLSRL  157 (570)
T ss_pred             EECCCCCCCHHHHHHHHHHHHCCCC---CCCEEEEEEECCCHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9898999530799999999847567---7741379984189999999995915227676889999999998853401499


Q ss_pred             HHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHH
Q ss_conf             88641467-65342268999999999999641376544001223315799654223310358330331011356667776
Q gi|254780306|r  156 LWQKLPGA-RSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLI  234 (837)
Q Consensus       156 L~rk~~~~-lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~  234 (837)
T Consensus       158 l~~~~~~~~LSaGRVQSpaL~lVveRE~EI~~F~p~~yw~i~a~~~~~~~~-f~a~~~~~~~~~~--~~~~~~~~a~~~~  234 (570)
T COG0550         158 LWKKLKRGVLSAGRVQSPALRLVVEREREIEAFVPEEYWEIKAIFEKGGGE-FSARLTEIEGKKE--GRLKDKDEAEEIV  234 (570)
T ss_pred             HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC-EEEEEECCCCCCC--CCCCCHHHHHHHH
T ss_conf             998605788676544551345657319999837997646999998448860-6788722564311--3455589999999


Q ss_pred             HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHH
Q ss_conf             42001563010000233222468521037999998876088899999999876213556721224553147554444305
Q gi|254780306|r  235 SFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPD  314 (837)
Q Consensus       235 ~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~e  314 (837)
T Consensus       235 ~~l~~~~~~V~~ve~k~~~~~pp~Pf~tstLQq~As~~lgfs~kktm~iAQ~LYE~-------~glITYpRTDs~~ls~~  307 (570)
T COG0550         235 NKLKGKPAKVVSVEKKPKKRSPPPPFTTSTLQQEASRKLGFSAKKTMDIAQKLYEG-------HGLITYPRTDSTRLSEE  307 (570)
T ss_pred             HHCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-------CCCEEECCCCCCCCCHH
T ss_conf             97048955999986013136898997579999999975799989999999999608-------99278257899857999


Q ss_pred             HHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
Q ss_conf             689999765520-0112376311112556668877765247730234640000019999999999999999998522211
Q gi|254780306|r  315 ALEAVRRSITSH-YGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAK  393 (837)
Q Consensus       315 a~~~~r~~i~~~-~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~  393 (837)
T Consensus       308 ~~~~~~~~i~~~~yg~~~l~~~~~~~~~~~~~~q~AHeAIrPT~-~~~p~~~~~---~de~klY~LI~rrflAs~m~~A~  383 (570)
T COG0550         308 ALAEARLYILAIAYGKEYLPLKPRRYPSKGKKAQEAHEAIRPTD-FETPESLKA---YDELKLYDLIWRRFLASQMPDAI  383 (570)
T ss_pred             HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHCCC---HHHHHHHHHHHHHHHHHHCCHHH
T ss_conf             99999999976320876422355557777788767887837788-788200165---55889999999999998381523


Q ss_pred             ECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCH
Q ss_conf             00100136774079639999987488058856763267776321001014886456882110011011123464310178
Q gi|254780306|r  394 FERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSE  473 (837)
Q Consensus       394 ~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytE  473 (837)
T Consensus       384 ~~~~~v~l~~~~~----~F~a~g~~~~~~Gw~~vy~~~----~~~~~~~~lP~l~~gd~l~~~~~~~~~~~T~PP~rytE  455 (570)
T COG0550         384 YEKTTVTLEVAGE----KFKASGKVLKFDGWLKVYGED----KDEEEDKELPELKEGDELKVEKLEVEEHFTKPPPRYTE  455 (570)
T ss_pred             HEEEEEEEEECCC----EEEEEEEEEECCCHHHHHCCC----CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCH
T ss_conf             0089999994186----799974488017579860643----45643465997788984566650022442597699898


Q ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf             99874332102566551578999997322022147712220114200002233665568988999999999998626013
Q gi|254780306|r  474 SSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLN  553 (837)
Q Consensus       474 asLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~  553 (837)
T Consensus       456 asLvk~mE~~GIGrpSTyA~iI~~L~~RgYv~~~~~~~~pT~~G~~v~~~L~~~f~~l~~~~~Ta~mE~~Ld~I~~gk~~  535 (570)
T COG0550         456 ASLVKAMEKLGIGTPSTYASIIETLQKRGYVEKKGKRLVPTELGEAVIELLEEYFPELVDPDFTAKMEEKLDEIAEGKLE  535 (570)
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEECCCEEEECHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             99999998479997001899999886277388029756775789999999987452426987899999989999859942


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             4789999867676655766775
Q gi|254780306|r  554 WKEVLHEFWEEFIEKIDSIKKL  575 (837)
Q Consensus       554 ~~~~L~~Fy~~f~~~i~~~~~~  575 (837)
T Consensus       536 ~~~~l~e~~~~~~~~~~~~~~~  557 (570)
T COG0550         536 WKDVLDEFKKKFSKLLEEAKKN  557 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8999999999889999999732