HHsearch alignment for GI: 254780306 and conserved domain: COG0550
>COG0550 TopA Topoisomerase IA [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=1333.58 Aligned_cols=550 Identities=50% Similarity=0.820 Sum_probs=518.3
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCC---CCCCCCCCCC-CCEEEEECCC-HHHHHHHHHHHHHHCCEE
Q ss_conf 9189977904787788750899899994251100786---5578676667-4406887765-489999999998709989
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPA---KKGSVLPEKE-FEMIWNIDPS-SQKHLQNIIHAVKSSTIL 75 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~---~~~~v~~~~~-f~p~y~v~~~-~kk~~~~i~~~~k~a~~i 75 (837)
T Consensus 1 ~~LiIvEsPskAk~Ia~~Lg~~~~V~as~GHi~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~v~~lk~~ak~ad~v 80 (570)
T COG0550 1 KRLIIVESPSKAKTIAKYLGKGYVVTASVGHLRDLPFPEEYKGWVDVDLPIFEPKYIIKPGKKKKVVKKLKKLAKKADEV 80 (570)
T ss_pred CEEEEEECHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHCCCCEE
T ss_conf 95999927789999998729994999756632137870211477577665566200215224579999999975549989
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHH
Q ss_conf 99469970257999999999755125788716999980379899999986226469899999999999898740113789
Q gi|254780306|r 76 ILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPI 155 (837)
Q Consensus 76 ilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~ 155 (837)
T Consensus 81 ~lAtD~DREGE~I~~~i~~~l~~~~---~~~~~R~~F~eiT~~aI~~A~~~p~~id~~lv~A~~aR~~lD~lvG~~lSr~ 157 (570)
T COG0550 81 YLATDPDREGEAIGWHILEVLKLKN---PSKVKRVVFSEITKKAILSAFKNPREIDMNLVDAQLARRILDRLVGYNLSRL 157 (570)
T ss_pred EECCCCCCCHHHHHHHHHHHHCCCC---CCCEEEEEEECCCHHHHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9898999530799999999847567---7741379984189999999995915227676889999999998853401499
Q ss_pred HHHHCCCC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHH
Q ss_conf 88641467-65342268999999999999641376544001223315799654223310358330331011356667776
Q gi|254780306|r 156 LWQKLPGA-RSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLI 234 (837)
Q Consensus 156 L~rk~~~~-lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~ 234 (837)
T Consensus 158 l~~~~~~~~LSaGRVQSpaL~lVveRE~EI~~F~p~~yw~i~a~~~~~~~~-f~a~~~~~~~~~~--~~~~~~~~a~~~~ 234 (570)
T COG0550 158 LWKKLKRGVLSAGRVQSPALRLVVEREREIEAFVPEEYWEIKAIFEKGGGE-FSARLTEIEGKKE--GRLKDKDEAEEIV 234 (570)
T ss_pred HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCC-EEEEEECCCCCCC--CCCCCHHHHHHHH
T ss_conf 998605788676544551345657319999837997646999998448860-6788722564311--3455589999999
Q ss_pred HHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHH
Q ss_conf 42001563010000233222468521037999998876088899999999876213556721224553147554444305
Q gi|254780306|r 235 SFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPD 314 (837)
Q Consensus 235 ~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~e 314 (837)
T Consensus 235 ~~l~~~~~~V~~ve~k~~~~~pp~Pf~tstLQq~As~~lgfs~kktm~iAQ~LYE~-------~glITYpRTDs~~ls~~ 307 (570)
T COG0550 235 NKLKGKPAKVVSVEKKPKKRSPPPPFTTSTLQQEASRKLGFSAKKTMDIAQKLYEG-------HGLITYPRTDSTRLSEE 307 (570)
T ss_pred HHCCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-------CCCEEECCCCCCCCCHH
T ss_conf 97048955999986013136898997579999999975799989999999999608-------99278257899857999
Q ss_pred HHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHE
Q ss_conf 689999765520-0112376311112556668877765247730234640000019999999999999999998522211
Q gi|254780306|r 315 ALEAVRRSITSH-YGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAK 393 (837)
Q Consensus 315 a~~~~r~~i~~~-~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~ 393 (837)
T Consensus 308 ~~~~~~~~i~~~~yg~~~l~~~~~~~~~~~~~~q~AHeAIrPT~-~~~p~~~~~---~de~klY~LI~rrflAs~m~~A~ 383 (570)
T COG0550 308 ALAEARLYILAIAYGKEYLPLKPRRYPSKGKKAQEAHEAIRPTD-FETPESLKA---YDELKLYDLIWRRFLASQMPDAI 383 (570)
T ss_pred HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCHHCCC---HHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99999999976320876422355557777788767887837788-788200165---55889999999999998381523
Q ss_pred ECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCH
Q ss_conf 00100136774079639999987488058856763267776321001014886456882110011011123464310178
Q gi|254780306|r 394 FERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSE 473 (837)
Q Consensus 394 ~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytE 473 (837)
T Consensus 384 ~~~~~v~l~~~~~----~F~a~g~~~~~~Gw~~vy~~~----~~~~~~~~lP~l~~gd~l~~~~~~~~~~~T~PP~rytE 455 (570)
T COG0550 384 YEKTTVTLEVAGE----KFKASGKVLKFDGWLKVYGED----KDEEEDKELPELKEGDELKVEKLEVEEHFTKPPPRYTE 455 (570)
T ss_pred HEEEEEEEEECCC----EEEEEEEEEECCCHHHHHCCC----CCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCH
T ss_conf 0089999994186----799974488017579860643----45643465997788984566650022442597699898
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
Q ss_conf 99874332102566551578999997322022147712220114200002233665568988999999999998626013
Q gi|254780306|r 474 SSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLN 553 (837)
Q Consensus 474 asLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~ 553 (837)
T Consensus 456 asLvk~mE~~GIGrpSTyA~iI~~L~~RgYv~~~~~~~~pT~~G~~v~~~L~~~f~~l~~~~~Ta~mE~~Ld~I~~gk~~ 535 (570)
T COG0550 456 ASLVKAMEKLGIGTPSTYASIIETLQKRGYVEKKGKRLVPTELGEAVIELLEEYFPELVDPDFTAKMEEKLDEIAEGKLE 535 (570)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEECCCEEEECHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999998479997001899999886277388029756775789999999987452426987899999989999859942
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4789999867676655766775
Q gi|254780306|r 554 WKEVLHEFWEEFIEKIDSIKKL 575 (837)
Q Consensus 554 ~~~~L~~Fy~~f~~~i~~~~~~ 575 (837)
T Consensus 536 ~~~~l~e~~~~~~~~~~~~~~~ 557 (570)
T COG0550 536 WKDVLDEFKKKFSKLLEEAKKN 557 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999889999999732