HHsearch alignment for GI: 254780306 and conserved domain: PRK05776
>PRK05776 DNA topoisomerase III; Provisional.
Probab=100.00 E-value=0 Score=1153.36 Aligned_cols=561 Identities=29% Similarity=0.447 Sum_probs=477.8
Q ss_pred EEEECCHHHHHHHHHHHCC--------------------CCEEEEEECCCEECCCCCCCCCC-CCCCCEEEEECCCH---
Q ss_conf 8997790478778875089--------------------98999942511007865578676-66744068877654---
Q gi|254780306|r 3 VIIVESPAKAKTISKYLGS--------------------NYKVLSSFGHIRDLPAKKGSVLP-EKEFEMIWNIDPSS--- 58 (837)
Q Consensus 3 LvIvEsP~kak~I~~~Lg~--------------------~y~V~as~GHirdLp~~~~~v~~-~~~f~p~y~v~~~~--- 58 (837)
T Consensus 11 LiIAEKPsvAk~IA~~Lg~~~~~~~~~~~~~~~~~~~g~~~iVt~~~GHl~~L~~~~~~~p~~~~~w~P~~~~~~~~~~~ 90 (675)
T PRK05776 11 LVIAEKPKAAKKIAEALSDKPIRCRKYGVPYWIVTNDGKKIVVAPAAGHLFGLHTDSRGFPVFDYEWKPLWEIDPSAKYT 90 (675)
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCEEEEEEECCEECCCCCCCCCCCCCCCCCCEEEEECCCCHHH
T ss_conf 99989889999999984889631057875313532689828999716673217853004976677877325715652007
Q ss_pred HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 89999999998709989994699702579999999997551257887169999803798999999862264698999999
Q gi|254780306|r 59 QKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAY 138 (837)
Q Consensus 59 kk~~~~i~~~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~ 138 (837)
T Consensus 91 kk~~~~ik~l~k~ad~viiAtD~DREGE~I~~~I~~~~~-----~~k~v~Rl~fssiT~~~I~~A~~nl~~~d~~l~~A~ 165 (675)
T PRK05776 91 KKYYELLSSLSKGASLYVNACDYDIEGSVIGYLIIKFFG-----DEKRAKRMKFSALTKQDIRRAFRNLERLDYEMINAG 165 (675)
T ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHC-----CCCCEEEEEEEECCHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 899999999870399999878988133899999999828-----998707899964799999999967674447788999
Q ss_pred HHHHHHHHHHHHHHCHHHHHHCCC------CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEE
Q ss_conf 999998987401137898864146------76534226899999999999964137654400122331579965422331
Q gi|254780306|r 139 LARRALDYLVGFNLSPILWQKLPG------ARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLT 212 (837)
Q Consensus 139 ~aRr~lD~lvG~~lSp~L~rk~~~------~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~ 212 (837)
T Consensus 166 ~aR~~~D~liG~nlSR~lt~~~~~~~g~~~~lSvGRVQTPtL~lIVeRe~EI~~F~p~~y~~i~~~~~~-~~~~f~~~~~ 244 (675)
T PRK05776 166 LARHELDWLWGINVSRALMEAVRDATGKRVILSAGRVQSPTLVEVVEREIERNLFVPLPYYSVSITVEK-GGKEFRLKVG 244 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE-CCEEEEEEEC
T ss_conf 999999886016540999999752058766311453115999999999999982889534999999981-8878999849
Q ss_pred EECCEEECCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf 03583303310113566677764200156-30100002332224685210379999988760888999999998762135
Q gi|254780306|r 213 DFNGQRIEKKSISNKKEADDLISFVKKAT-YSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGI 291 (837)
Q Consensus 213 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~ 291 (837)
T Consensus 245 ---------~~~~~~~ea~~~~~~l~~~~~~~V~~v~~k~k~~~PP~pf~ts~LQ~~Ask~~g~Sa~~tm~iAQ~LYe-- 313 (675)
T PRK05776 245 ---------KTFEKKEEAKEIISEIRKKGYLIVVEVEEKDEILRPPPPFNLGDLQKEAARIYGFSPYKTQSIAEELYL-- 313 (675)
T ss_pred ---------CCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHC--
T ss_conf ---------987889999999999857997599988850564379899758999999999759889999999999872--
Q ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-----HHCCC--CCCCCCCC-CC-CCCCCCCCCCCCCEEEEECCCCC
Q ss_conf 567212245531475544443056899997655-----20011--23763111-12-55666887776524773023464
Q gi|254780306|r 292 DVNGEIVGLITYMRTDGVHMSPDALEAVRRSIT-----SHYGD--HYLPEKPR-IY-SSKSKNAQEAHEAIRPNDFDFLP 362 (837)
Q Consensus 292 ~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~-----~~~g~--~~l~~~~r-~y-~~k~k~aQeAHeAIrPT~~~~~p 362 (837)
T Consensus 314 ------~glITYPRTDS~~lp~~~--~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aH~AI~PT~~--~~ 383 (675)
T PRK05776 314 ------DALISYPRTNSQKIPPTI--DYRAILDGLSSIKSYRNLVELLLKETKGVLRPVQGSKDDPAHPAIYPTGE--KP 383 (675)
T ss_pred ------CCCEECCCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC--CC
T ss_conf ------881766887887688233--29999999974254778999875651474222556666777754033756--73
Q ss_pred CHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHC
Q ss_conf 00000199999999999999999985222110010013677407963999998748805885676326777632100101
Q gi|254780306|r 363 SKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDI 442 (837)
Q Consensus 363 ~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~ 442 (837)
T Consensus 384 ----~~Ls~de~klY~LI~rRflas~~~~a~~~~t~v~~~~~~--~~~~F~~~g~~i~~~Gw~~v~~~~~~------~~~ 451 (675)
T PRK05776 384 ----KNLSKKHMKIYDLIVRRFLASFSRDAIVSKTKVTLRVPD--FDIVFKATGQRIEDKGWLKYYPFSKP------SEE 451 (675)
T ss_pred ----CCCCHHHHHHHHHHHHHHHHHHCCHHHEEEEEEEEEECC--CCEEEEEEEEEEEECCEEEEECCCCC------CCC
T ss_conf ----429999999999999999998486310689999999889--73599999799998880255168875------546
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCC
Q ss_conf 48864568821100110111234643101789987433210256655157899999732202214771222011420000
Q gi|254780306|r 443 LLPYISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTA 522 (837)
Q Consensus 443 ~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~ 522 (837)
T Consensus 452 ~LP~l~~G~~~~~~~~~~~e~~TkPP~ryTEatLi~~ME~~GIGTpATra~IIe~L~~R~Yi~~~~~~l~pT~~G~~li~ 531 (675)
T PRK05776 452 KLPDLKKGEKLKIVKVSVRMSYTKPPERYTKASLLKWMESVNIGTEATRARIIETLFKRKYLRSKGGKVYATPLGIGVAE 531 (675)
T ss_pred CCCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEECCEEEECHHHHHHHH
T ss_conf 59978999987888747751426999998999999998658999501689999989648969905999987445999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 22336655689889999999999986260134789999867676655766775566677655676641024555567661
Q gi|254780306|r 523 FLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDS 602 (837)
Q Consensus 523 ~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~ 602 (837)
T Consensus 532 ~l~~~~~~l~~p~~Ta~~E~~L~~I~~Gk~~~~~f~~e~~~~~~~~v~~~~~~-~~~~~~~--------~~~~~~~~~~~ 602 (675)
T PRK05776 532 ILQKYFPDLTSVELTRRFEEKLEKIRSGKERREEVVEEAKKTLRKLLEEFKKN-KDEVGEE--------LAYSLGLIEPP 602 (675)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--------HHHHHCCCCCC
T ss_conf 99974365259148999999989998799999999999999999999999863-9988899--------87530255677
Q ss_pred EECCCCCCC
Q ss_conf 143346777
Q gi|254780306|r 603 RTCPECHTH 611 (837)
Q Consensus 603 ~~Cp~C~~g 611 (837)
T Consensus 603 g~Cp~Cg~~ 611 (675)
T PRK05776 603 RKCKLCGRE 611 (675)
T ss_pred CCCCCCCCH
T ss_conf 889876602