HHsearch alignment for GI: 254780306 and conserved domain: PRK05776

>PRK05776 DNA topoisomerase III; Provisional.
Probab=94.59  E-value=0.13  Score=31.02  Aligned_cols=113  Identities=18%  Similarity=0.290  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHH-HHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf             99999999999985-22211001001367740796399999874880588567632677763210010148864568821
Q gi|254780306|r  375 QLYNLIWKRSVASQ-MASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQL  453 (837)
Q Consensus       375 klY~LI~~R~lasq-m~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~  453 (837)
T Consensus       205 PtL~lIVeRe~EI~~F~p~~y~~i~~~~~~--~~--~~f~~~~~----~~~----------~~~~ea~~~~~~l~~~~~~  266 (675)
T PRK05776        205 PTLVEVVEREIERNLFVPLPYYSVSITVEK--GG--KEFRLKVG----KTF----------EKKEEAKEIISEIRKKGYL  266 (675)
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEEEEEEEE--CC--EEEEEEEC----CCC----------CCHHHHHHHHHHHHCCCCE
T ss_conf             999999999999982889534999999981--88--78999849----987----------8899999999998579975


Q ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCEEEC
Q ss_conf             10011011123464310178998743321-025665515789999973220221
Q gi|254780306|r  454 IATETNASQHFTEPPPRYSESSLIKKMEE-IGIGRPSTYATILETLYKRKYVIA  506 (837)
Q Consensus       454 ~~~~~~~~~~~TkPP~rytEasLik~mE~-~GIGrPSTyA~II~~L~~R~YV~~  506 (837)
T Consensus       267 ~V~~v~~k~k~~~PP~pf~ts~LQ~~Ask~~g~Sa~-~tm~iAQ~LYe~glITY  319 (675)
T PRK05776        267 IVVEVEEKDEILRPPPPFNLGDLQKEAARIYGFSPY-KTQSIAEELYLDALISY  319 (675)
T ss_pred             EEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHCCCCEEC
T ss_conf             999888505643798997589999999997598899-99999999872881766