HHsearch alignment for GI: 254780306 and conserved domain: PRK05776
>PRK05776 DNA topoisomerase III; Provisional.
Probab=94.59 E-value=0.13 Score=31.02 Aligned_cols=113 Identities=18% Similarity=0.290 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHH-HHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 99999999999985-22211001001367740796399999874880588567632677763210010148864568821
Q gi|254780306|r 375 QLYNLIWKRSVASQ-MASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQL 453 (837)
Q Consensus 375 klY~LI~~R~lasq-m~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~ 453 (837)
T Consensus 205 PtL~lIVeRe~EI~~F~p~~y~~i~~~~~~--~~--~~f~~~~~----~~~----------~~~~ea~~~~~~l~~~~~~ 266 (675)
T PRK05776 205 PTLVEVVEREIERNLFVPLPYYSVSITVEK--GG--KEFRLKVG----KTF----------EKKEEAKEIISEIRKKGYL 266 (675)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEEEEE--CC--EEEEEEEC----CCC----------CCHHHHHHHHHHHHCCCCE
T ss_conf 999999999999982889534999999981--88--78999849----987----------8899999999998579975
Q ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHH-CCCCCCCCHHHHHHHHHHCCEEEC
Q ss_conf 10011011123464310178998743321-025665515789999973220221
Q gi|254780306|r 454 IATETNASQHFTEPPPRYSESSLIKKMEE-IGIGRPSTYATILETLYKRKYVIA 506 (837)
Q Consensus 454 ~~~~~~~~~~~TkPP~rytEasLik~mE~-~GIGrPSTyA~II~~L~~R~YV~~ 506 (837)
T Consensus 267 ~V~~v~~k~k~~~PP~pf~ts~LQ~~Ask~~g~Sa~-~tm~iAQ~LYe~glITY 319 (675)
T PRK05776 267 IVVEVEEKDEILRPPPPFNLGDLQKEAARIYGFSPY-KTQSIAEELYLDALISY 319 (675)
T ss_pred EEEEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCHH-HHHHHHHHHHCCCCEEC
T ss_conf 999888505643798997589999999997598899-99999999872881766