HHsearch alignment for GI: 254780306 and conserved domain: PRK06319

>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated.
Probab=99.19  E-value=5.3e-11  Score=101.63  Aligned_cols=80  Identities=20%  Similarity=0.426  Sum_probs=56.7

Q ss_pred             CEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCCCEEEEC
Q ss_conf             11433467773136871577611123434323332100122100001234420146899--9966999826974227734
Q gi|254780306|r  602 SRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLE--TKESVTLRSGRFGLYVQRG  679 (837)
Q Consensus       602 ~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~--~G~~I~lk~GryGpYvq~G  679 (837)
T Consensus       645 ~~~Cp~Cg~-~mv~k-~gr~G~F~~Cs~YP~Ck~t~~l~k~~~~---~~~~~~~v~cp~~~c~g~~v~r~sr~g~-~Fyg  718 (864)
T PRK06319        645 DSPCPLCGG-EMKVR-HGRFGTFLGCENYPECRGIINIHKKGEE---GIEQEETIPCPAIGCTGHIVKRRSRFNK-IFYS  718 (864)
T ss_pred             CCCCCCCCC-CCEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEC
T ss_conf             998767897-01131-3787754316998577897466666777---8765677768998989868886347898-4436


Q ss_pred             CCCCCCCC
Q ss_conf             88777613
Q gi|254780306|r  680 DGKDAKRC  687 (837)
Q Consensus       680 e~~kpkr~  687 (837)
T Consensus       719 c~~yP~c~  726 (864)
T PRK06319        719 CSEYPECS  726 (864)
T ss_pred             CCCCCCCC
T ss_conf             78899985