HHsearch alignment for GI: 254780306 and conserved domain: PRK06319
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated.
Probab=99.19 E-value=5.3e-11 Score=101.63 Aligned_cols=80 Identities=20% Similarity=0.426 Sum_probs=56.7
Q ss_pred CEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCEEEEEECCCCCEEEEC
Q ss_conf 11433467773136871577611123434323332100122100001234420146899--9966999826974227734
Q gi|254780306|r 602 SRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLE--TKESVTLRSGRFGLYVQRG 679 (837)
Q Consensus 602 ~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~--~G~~I~lk~GryGpYvq~G 679 (837)
T Consensus 645 ~~~Cp~Cg~-~mv~k-~gr~G~F~~Cs~YP~Ck~t~~l~k~~~~---~~~~~~~v~cp~~~c~g~~v~r~sr~g~-~Fyg 718 (864)
T PRK06319 645 DSPCPLCGG-EMKVR-HGRFGTFLGCENYPECRGIINIHKKGEE---GIEQEETIPCPAIGCTGHIVKRRSRFNK-IFYS 718 (864)
T ss_pred CCCCCCCCC-CCEEE-CCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEC
T ss_conf 998767897-01131-3787754316998577897466666777---8765677768998989868886347898-4436
Q ss_pred CCCCCCCC
Q ss_conf 88777613
Q gi|254780306|r 680 DGKDAKRC 687 (837)
Q Consensus 680 e~~kpkr~ 687 (837)
T Consensus 719 c~~yP~c~ 726 (864)
T PRK06319 719 CSEYPECS 726 (864)
T ss_pred CCCCCCCC
T ss_conf 78899985