HHsearch alignment for GI: 254780306 and conserved domain: PRK06599
>PRK06599 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=1910.68 Aligned_cols=761 Identities=49% Similarity=0.861 Sum_probs=721.1
Q ss_pred CCEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCEEEECCC
Q ss_conf 91899779047877887508998999942511007865578676667440688776548999999999870998999469
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAKKGSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATD 80 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~~~~v~~~~~f~p~y~v~~~~kk~~~~i~~~~k~a~~iilAtD 80 (837)
T Consensus 1 MkLvIvESPsKaktI~k~LG~~y~V~as~GHi~dLp~~~~~v~~~~~f~~~y~~~~~~~k~i~~lk~l~k~ad~V~lATD 80 (776)
T PRK06599 1 MKLVIVESPAKAKTINKYLGDEFKVIASFGHIRDLPSKKGSVLPDENFAMKYDISDKAGKYVDAIVKDAKKAEAVYLATD 80 (776)
T ss_pred CEEEEECCHHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 90999817389999999709597999713737546765488676778734679897678899999999847998998989
Q ss_pred CCCHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHH
Q ss_conf 970257999999999755125-7887169999803798999999862264698999999999998987401137898864
Q gi|254780306|r 81 PDREGEAISWHVLDVLRQKNL-IEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYLVGFNLSPILWQK 159 (837)
Q Consensus 81 ~DREGE~Iawhi~e~l~~~~~-~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~lvG~~lSp~L~rk 159 (837)
T Consensus 81 pDREGEaIawhi~e~l~~~~~~~~~~~~kRi~f~eITk~AI~~Al~npr~id~~Lv~Aq~aRr~lDrlvG~~lSp~L~~k 160 (776)
T PRK06599 81 PDREGESISWHVAEVIKEKNKVKSDDFFKRVAFNEITKKAIIHAVENPRKLDTNLVNAQQARRALDYLVGFTLSPLLWRK 160 (776)
T ss_pred CCCCHHHHHHHHHHHHCHHCCCCCCCCEEEEEEECCCHHHHHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 97043699999999856004676777603899933899999999959320177789999999998855337455999974
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 14676534226899999999999964137654400122331579965422331035833033101135666777642001
Q gi|254780306|r 160 LPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIEKKSISNKKEADDLISFVKK 239 (837)
Q Consensus 160 ~~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 239 (837)
T Consensus 161 ~~~~~SaGRVQSpaL~LIveRE~EI~~F~p~~Yw~v~a~~~~~~~~~f~a~l~~~~~~k~~k~~i~~~~~A~~i~~~l~~ 240 (776)
T PRK06599 161 LPGCKSAGRVQSVALRLICEREDEIERFKSEEYWDISLKMQNSNNELFTAKLTHVNDQKLEKFSIINEKEAKDLTKKLKS 240 (776)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 37888666310799999998799998358741589999997489964777887516730031565899999999998516
Q ss_pred CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf 56301000023322246852103799999887608889999999987621355672122455314755444430568999
Q gi|254780306|r 240 ATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGIDVNGEIVGLITYMRTDGVHMSPDALEAV 319 (837)
Q Consensus 240 ~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~~~~~~~~GlITYpRTDS~~ls~ea~~~~ 319 (837)
T Consensus 241 ~~~~V~~v~~k~~k~~Pp~PFtTStLQqeAs~klg~Sak~TM~iAQ~LYE~~~~~~e~~GlITYmRTDS~~LS~e~~~~~ 320 (776)
T PRK06599 241 QKFHVDKIEKKQQKRQPQPPFITSSLQQEAARKLGFSAKKTMQIAQKLYEGVDIGKETIGLITYMRTDGVTLSNDAIADI 320 (776)
T ss_pred CCEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 97499998765421279899766899999998718889999999999985155575655258996588861399999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEE
Q ss_conf 97655200112376311112556668877765247730234640000019999999999999999998522211001001
Q gi|254780306|r 320 RRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMKQFLDSDQFQLYNLIWKRSVASQMASAKFERTTV 399 (837)
Q Consensus 320 r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v 399 (837)
T Consensus 321 ~~~I~~~~g~~yl~~~~r~~k~k~~naqeAHeAIrPT~~~~~p~~~~~~l~~de~kLY~LI~~R~lAsqm~~a~~~~~~~ 400 (776)
T PRK06599 321 RKLIDKSYGDKYLPSSPRIYKSKVKNAQEAHEAIRPTNITYTPDSLKEKLEKDYYKLYELIWKRTIACQMENVIMDLVVA 400 (776)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHEEEEEEE
T ss_conf 99998741254333132001464434535777767877665733543016888999999999999997075016789999
Q ss_pred EEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf 36774079639999987488058856763267776321001014886456882110011011123464310178998743
Q gi|254780306|r 400 NIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPYISANEQLIATETNASQHFTEPPPRYSESSLIKK 479 (837)
Q Consensus 400 ~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~ 479 (837)
T Consensus 401 ~i~~~--~~~~~~~asg~~i~f~G~~~vy~~~~~~~~-~~~~~~LP~l~~g~~l~~~~i~~~~~~TkPP~RYTEasLVk~ 477 (776)
T PRK06599 401 NLASE--NKEYLAKANGSTIAFDGFYKVYRESVDDEA-EEENKMLPPLKEQEPLKTKEIIPNQHFTEPPPRYSEASLVKK 477 (776)
T ss_pred EEEEC--CCEEEEEEEEEEEEECCCCEECCCCCCCCC-CCHHCCCCCCCCCCCCCEEEEEECCEECCCCCCCCHHHHHHH
T ss_conf 99967--953899998899973650210023355532-101113885336884202455412156279988798999999
Q ss_pred HHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 32102566551578999997322022147712220114200002233665568988999999999998626013478999
Q gi|254780306|r 480 MEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLH 559 (837)
Q Consensus 480 mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~ 559 (837)
T Consensus 478 mE~~GIGRPSTyAsII~tL~~R~YV~~~~k~liPT~~G~~V~~~L~~~F~~ivd~~fTA~mE~~LD~Ia~G~~~w~~~l~ 557 (776)
T PRK06599 478 LEELGIGRPSTYASILSVLQDRKYVALEKKRFIPEELGRLVTVFLVGFFKKYVEYDFTAGLENELDEIAAGKLEWKAALN 557 (776)
T ss_pred HHHCCCCCCCCHHHHHHHHHCCCCEEECCCEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 98569998760567787775378488428430125648999999987553512740568999867898769824999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98676766557667755666776556766410245555676611433467773136871577611123434323332100
Q gi|254780306|r 560 EFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQL 639 (837)
Q Consensus 560 ~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l 639 (837)
T Consensus 558 ~Fy~~f~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~cp~c~~g~l~~r~-gk~G~f~~cs~yp~c~~~~~~ 633 (776)
T PRK06599 558 NFWSGFNHNIESVNEQKITEIISYVQKALDYHLFGENK---ESKVCPSCKTGELSLKL-GKFGAFLACSNYPECTFRKSI 633 (776)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CCCCCCCCCCCCEEEEE-CCCCCCCCCCCCCCCCCCCCC
T ss_conf 99876666677777631346777787530211246666---66517878887358960-586574115798666666768
Q ss_pred CCCCCCC-------CCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCC---CCCCCCCCCCCCHHHCCHHHHHHHHHC
Q ss_conf 1221000-------012344201468999966999826974227734887---776133789988425489999998615
Q gi|254780306|r 640 TSNPQDI-------PEMKESVLLGNDLETKESVTLRSGRFGLYVQRGDGK---DAKRCSLPKTWKSDSVDYDKAMSLLSL 709 (837)
Q Consensus 640 ~~~~~~~-------~~~~~~~~LG~dP~~G~~I~lk~GryGpYvq~Ge~~---kpkr~si~k~~~~~~itle~Al~LLsL 709 (837)
T Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~lG~d~~-g~~v~~k~GryGpyvq~g~~~~~~kpk~~sl~~~~~~~~itle~Al~ll~l 712 (776)
T PRK06599 634 VSGNDNNENEGEPKAIPNENKVLGTDKD-GVEIYLKKGPYGPYIQLGEQEGKVKPKRSPVPASLNQNDITLEIALKLLSL 712 (776)
T ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCC-CCEEEEECCCCCCEEEECCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHC
T ss_conf 8765640234566633467820242989-998999248886769844777877877567889998323189999999838
Q ss_pred CHHHCCCCCCCCEEEEEECCCCCEEEECCEECCCCCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 255157778987499911587652616781112488775143579999999983651134
Q gi|254780306|r 710 PREIGIHPETQKNIIAGTGKYGYYLNHDGAYTKLESIEQVLTIDLEQAISCITEKKKIEK 769 (837)
Q Consensus 710 Pr~lG~~pe~g~~I~~~~GryGpYi~~~~~~~sl~~~~~~~~I~l~~Aieli~~~k~~~~ 769 (837)
T Consensus 713 Pr~lG~~p~~g~~i~~~~GryGpYvk~~~~~~sl~~~~~~~~i~l~~A~~li~~~k~~~~ 772 (776)
T PRK06599 713 PLKIGIHKDSGEEIMIGYGKFGPYIKYMGKFISIPKKYDFLNLSLDDAMKLIEDNKAKLE 772 (776)
T ss_pred CHHHCCCCCCCCEEEECCCCCCCEEEECCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCH
T ss_conf 373199978997799877788720888998876798888743589999999998876332