HHsearch alignment for GI: 254780306 and conserved domain: PRK07219
>PRK07219 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=1268.54 Aligned_cols=660 Identities=24% Similarity=0.382 Sum_probs=535.6
Q ss_pred CCEEEECCHHHHHHHHHHHCCC---------------------CEEEEEECCCEEC--CCCC--C-CCCCCCCCCEEEEE
Q ss_conf 9189977904787788750899---------------------8999942511007--8655--7-86766674406887
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYLGSN---------------------YKVLSSFGHIRDL--PAKK--G-SVLPEKEFEMIWNI 54 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~Lg~~---------------------y~V~as~GHirdL--p~~~--~-~v~~~~~f~p~y~v 54 (837)
T Consensus 4 MkLiIAEKPSvAr~IA~~L~~g~~k~~~~~g~~y~ef~~~g~~~~vt~~~GHl~el~~p~~y~~W~~~~l~~l~~~~~~~ 83 (769)
T PRK07219 4 FRLIIAEKMDAGRRIAYFLSKGTSKQKRSKGSSYIEFESNGEKTVLIPLSGHIVEADFPSDFSDWLKSDLNLLIDARIVK 83 (769)
T ss_pred CEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCEEE
T ss_conf 68999877699999999737998666556787459995179679999725422345678567877768720158864142
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHH
Q ss_conf 76548999999999870998999469970257999999999755125788716999980379899999986226469899
Q gi|254780306|r 55 DPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDL 134 (837)
Q Consensus 55 ~~~~kk~~~~i~~~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~L 134 (837)
T Consensus 84 ~~~~k~~~~~Lk~lak~ad~IilAtDpDREGE~I~~~i~~~l~~----~~~~v~Ri~f~eiT~~aI~~A~~n~~~~d~~L 159 (769)
T PRK07219 84 NVKNKRAYQTLKNFKGKADEIIIATDYDREGELIGVEALDIIKE----GKENIKRAKFSALTEKEINDAFSNTINVNYNL 159 (769)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHCC----CCCCCEEEEEECCCHHHHHHHHHCCCCCCHHH
T ss_conf 47618999999999816999998988870434999999998522----59984689981489999999996852046889
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHCC----CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 999999999898740113789886414----6765342268999999999999641376544001223315799654223
Q gi|254780306|r 135 VNAYLARRALDYLVGFNLSPILWQKLP----GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAH 210 (837)
Q Consensus 135 v~A~~aRr~lD~lvG~~lSp~L~rk~~----~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~ 210 (837)
T Consensus 160 ~~A~~aRr~lD~lvG~nlSr~lt~~~~~l~~~~LSaGRVQTPtL~lIveRe~EI~~F~pe~yw~i~~~~~~--~~~f~a~ 237 (769)
T PRK07219 160 ADAADARESIDLIWGAVLTRFFSIATGRLGKDFLSAGRVQTPTLAIVVKREREIRSFVPEKYWTISITFNK--NGDFDAY 237 (769)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC--CCCEEEE
T ss_conf 99999999999998631068988887641456666452000778999999999983799534899999804--8826885
Q ss_pred EEEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 31035833033101135666777642001563010000233222468521037999998876088899999999876213
Q gi|254780306|r 211 LTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEG 290 (837)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~ 290 (837)
T Consensus 238 ~---------~~~~~d~~~a~~i~~~l~~~~~~V~~v~~k~~~~~pP~Pf~tstLQq~As-rlg~s~~kTm~iAQ~LYe- 306 (769)
T PRK07219 238 Y---------NNELKDRDTAEKIFSEIKGMPGRVKSFDKEEYYIRRPAPFSTTEFLREAS-RIGIMPTKAMSIAEKLYM- 306 (769)
T ss_pred C---------CCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHH-HCCCCHHHHHHHHHHHHH-
T ss_conf 4---------76668999999999997289947999972221026999978389999998-718999999999998864-
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCHHH-HHHHHHHHH----HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 5567212245531475544443056-899997655----20011237631111255666887776524773023464000
Q gi|254780306|r 291 IDVNGEIVGLITYMRTDGVHMSPDA-LEAVRRSIT----SHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKM 365 (837)
Q Consensus 291 ~~~~~~~~GlITYpRTDS~~ls~ea-~~~~r~~i~----~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~ 365 (837)
T Consensus 307 -------~GlITYpRTDS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~H~aI~PT~~~------ 372 (769)
T PRK07219 307 -------RGLISYPRTDNTVYPRSINLKSVLEKLKKSEYSMYVDEILS-QEKILPSRGRTETTDHPPIYPVSVP------ 372 (769)
T ss_pred -------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCC------
T ss_conf -------89544677654225610329999999876467888987414-4556776444442335575646677------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCC
Q ss_conf 00199999999999999999985222110010013677407963999998748805885676326777632100101488
Q gi|254780306|r 366 KQFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLP 445 (837)
Q Consensus 366 ~~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP 445 (837)
T Consensus 373 ~~~Ls~de~klY~LI~~RflAs~m~~a~~~~t~v~i~~~~----~~F~asG~~i~~~Gw~~vy~~~~-------~d~~LP 441 (769)
T PRK07219 373 KEELKGDYKRIYDLILRRFLSTLYRDGVKTVSEAEIDVNG----YDFIAEGNITTDNGWYDIYGYKS-------RDYFVP 441 (769)
T ss_pred CHHCCHHHHHHHHHHHHHHHHHHCHHHEEEEEEEEEEECC----CEEEEEEEEEEECCHHHHHCCCC-------CCCCCC
T ss_conf 0016999999999999999998480244788999999689----58999989993558798608875-------446589
Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCC
Q ss_conf 64568821100110111234643101789987433210256655157899999732202214771222011420000223
Q gi|254780306|r 446 YISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLE 525 (837)
Q Consensus 446 ~l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~ 525 (837)
T Consensus 442 ~l~~g~~~~~~~~~~~~~~T~PP~ryTEasLIk~ME~~GIGrpSTyA~iI~tL~~R~YV--e~~~l~PT~lG~~v~~~l~ 519 (769)
T PRK07219 442 DLEEGEVLNGRDWELQEKETKPPPRYDMSSLLKKMESLNLGTKSTRHDIIGKLISRGFI--EGNPVKPTPLGEAFIDAVI 519 (769)
T ss_pred CCCCCCEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC--CCCCCEECHHHHHHHHHHH
T ss_conf 88889872344788763252799987999999988617998501599999999863875--0897507688999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEC
Q ss_conf 36655689889999999999986260134789999867676655766775566677655676641024555567661143
Q gi|254780306|r 526 NFFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTC 605 (837)
Q Consensus 526 ~~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~C 605 (837)
T Consensus 520 ~~~~~l~~~~~Ta~~E~~Ld~I~~G~~~~~~vl~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~~c 590 (769)
T PRK07219 520 SVNSRIADPEMTAKLEMDMDKIESGTMSKDDVVNESKKMLHSVLNDFQGK-TSDVKKIINDGI--------NAGESLGRC 590 (769)
T ss_pred HHCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH--------CCCCCCCCC
T ss_conf 73545339267899999999998489879999999999999999999998-999998875432--------134445777
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE--EEEECCCCCEEEECCCCC
Q ss_conf 346777313687157761112343432333210012210000123442014689999669--998269742277348877
Q gi|254780306|r 606 PECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESV--TLRSGRFGLYVQRGDGKD 683 (837)
Q Consensus 606 p~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~~I--~lk~GryGpYvq~Ge~~k 683 (837)
T Consensus 591 p~~~g~~l~~~-~~~~~~~~~c~~-p~C~~~~~~~~~g~~--~~~-~---~~Cp~Cg~~~ik~~~~g~~~~~~c~~--P~ 660 (769)
T PRK07219 591 PFHDGNELFLI-KDRFTYKIRCED-ENCRIDFNIKSNGSI--QLN-D---QKCPVCGLPMIKIIRKGQSPEVKCID--PA 660 (769)
T ss_pred CCCCCCCEEEE-ECCCCCEEECCC-CCCCCCCCCCCCCCE--EEC-C---CCCCCCCCHHHHEECCCCCCCCCCCC--CC
T ss_conf 65567520465-045550242278-776653335778850--016-8---86878895255012466687740599--98
Q ss_pred CCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCC-EEEECCEECCCC
Q ss_conf 7613378998842548999999861525515777898749991158765-261678111248
Q gi|254780306|r 684 AKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGY-YLNHDGAYTKLE 744 (837)
Q Consensus 684 pkr~si~k~~~~~~itle~Al~LLsLPr~lG~~pe~g~~I~~~~GryGp-Yi~~~~~~~sl~ 744 (837)
T Consensus 661 C~~-----~~~---------------~~~~~~CP~cgg~lv~r~sk~gk~F~gCs~-yP~C~ 701 (769)
T PRK07219 661 CDY-----NKE---------------KEDYGECPADGGRLVLRQSRYGKRFLGCSN-YPKCT 701 (769)
T ss_pred CCC-----CCC---------------CCCCCCCCCCCCEEEEECCCCCCEEECCCC-CCCCC
T ss_conf 878-----778---------------777722889997799863789985651799-99997