HHsearch alignment for GI: 254780306 and conserved domain: PRK07219
>PRK07219 DNA topoisomerase I; Validated.
Probab=99.03 E-value=4.6e-09 Score=87.10 Aligned_cols=113 Identities=16% Similarity=0.279 Sum_probs=71.9
Q ss_pred CCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEEC
Q ss_conf 61143346777313687157761112343432333210012210000123442014689999669998269742-27734
Q gi|254780306|r 601 DSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGL-YVQRG 679 (837)
Q Consensus 601 ~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~~I~lk~GryGp-Yvq~G 679 (837)
T Consensus 631 ~~~~Cp~Cg~~~ik~~~~g~~~-~~~c~~-P~C~~~~~~-------------~~~~~CP~cgg~lv~r~sk~gk~F~gCs 695 (769)
T PRK07219 631 NDQKCPVCGLPMIKIIRKGQSP-EVKCID-PACDYNKEK-------------EDYGECPADGGRLVLRQSRYGKRFLGCS 695 (769)
T ss_pred CCCCCCCCCCHHHHEECCCCCC-CCCCCC-CCCCCCCCC-------------CCCCCCCCCCCEEEEECCCCCCEEECCC
T ss_conf 6886878895255012466687-740599-988787787-------------7772288999779986378998565179
Q ss_pred CCCCCCCC-CCCCCCCHHHCCHHHHHHHHHCCHHHC-CCCCCCCEEEEEECCCCCEEEECCEECCC
Q ss_conf 88777613-378998842548999999861525515-77789874999115876526167811124
Q gi|254780306|r 680 DGKDAKRC-SLPKTWKSDSVDYDKAMSLLSLPREIG-IHPETQKNIIAGTGKYGYYLNHDGAYTKL 743 (837)
Q Consensus 680 e~~kpkr~-si~k~~~~~~itle~Al~LLsLPr~lG-~~pe~g~~I~~~~GryGpYi~~~~~~~sl 743 (837)
T Consensus 696 ~yP~C~~t~~lp~~~~~---------------~~~~e~Cp~Cg~~~~~~~~~~~~~~~C~~~~C~~ 746 (769)
T PRK07219 696 NYPKCTVTYPLPQKGII---------------KKTGEKCPYCGAPILVLINGRRHWKFCPNIDCEY 746 (769)
T ss_pred CCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCC
T ss_conf 99999752507544764---------------5058847778983799972784300689989998