HHsearch alignment for GI: 254780306 and conserved domain: PRK07219

>PRK07219 DNA topoisomerase I; Validated.
Probab=99.03  E-value=4.6e-09  Score=87.10  Aligned_cols=113  Identities=16%  Similarity=0.279  Sum_probs=71.9

Q ss_pred             CCEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCC-EEEEC
Q ss_conf             61143346777313687157761112343432333210012210000123442014689999669998269742-27734
Q gi|254780306|r  601 DSRTCPECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLRSGRFGL-YVQRG  679 (837)
Q Consensus       601 ~~~~Cp~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~~I~lk~GryGp-Yvq~G  679 (837)
T Consensus       631 ~~~~Cp~Cg~~~ik~~~~g~~~-~~~c~~-P~C~~~~~~-------------~~~~~CP~cgg~lv~r~sk~gk~F~gCs  695 (769)
T PRK07219        631 NDQKCPVCGLPMIKIIRKGQSP-EVKCID-PACDYNKEK-------------EDYGECPADGGRLVLRQSRYGKRFLGCS  695 (769)
T ss_pred             CCCCCCCCCCHHHHEECCCCCC-CCCCCC-CCCCCCCCC-------------CCCCCCCCCCCEEEEECCCCCCEEECCC
T ss_conf             6886878895255012466687-740599-988787787-------------7772288999779986378998565179


Q ss_pred             CCCCCCCC-CCCCCCCHHHCCHHHHHHHHHCCHHHC-CCCCCCCEEEEEECCCCCEEEECCEECCC
Q ss_conf             88777613-378998842548999999861525515-77789874999115876526167811124
Q gi|254780306|r  680 DGKDAKRC-SLPKTWKSDSVDYDKAMSLLSLPREIG-IHPETQKNIIAGTGKYGYYLNHDGAYTKL  743 (837)
Q Consensus       680 e~~kpkr~-si~k~~~~~~itle~Al~LLsLPr~lG-~~pe~g~~I~~~~GryGpYi~~~~~~~sl  743 (837)
T Consensus       696 ~yP~C~~t~~lp~~~~~---------------~~~~e~Cp~Cg~~~~~~~~~~~~~~~C~~~~C~~  746 (769)
T PRK07219        696 NYPKCTVTYPLPQKGII---------------KKTGEKCPYCGAPILVLINGRRHWKFCPNIDCEY  746 (769)
T ss_pred             CCCCCCCCCCCCCCCCC---------------CCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCC
T ss_conf             99999752507544764---------------5058847778983799972784300689989998