HHsearch alignment for GI: 254780306 and conserved domain: PRK07220
>PRK07220 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=1278.94 Aligned_cols=614 Identities=28% Similarity=0.421 Sum_probs=516.9
Q ss_pred CCEEEECCHHHHHHHHHHHCC---------------------CCEEEEEECCCEEC--CCCC---CCCCCCCCCCEEEEE
Q ss_conf 918997790478778875089---------------------98999942511007--8655---786766674406887
Q gi|254780306|r 1 MNVIIVESPAKAKTISKYLGS---------------------NYKVLSSFGHIRDL--PAKK---GSVLPEKEFEMIWNI 54 (837)
Q Consensus 1 M~LvIvEsP~kak~I~~~Lg~---------------------~y~V~as~GHirdL--p~~~---~~v~~~~~f~p~y~v 54 (837)
T Consensus 1 M~LiIAEKPsvAk~IA~~Lg~~~~~~~~~~g~~~y~~~~~~~~~ivt~~~GHL~~ld~P~~y~~W~~~d~~~l~~~~~~~ 80 (740)
T PRK07220 1 MHLIITEKNIAARRIAQILAPKSPKETKVSGVDVYRYEERRQETVVVGLSGHIVGIDFPEEYNNWQKVDPRDLIDAEIIT 80 (740)
T ss_pred CEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCEECCCCCCCCCCCCCCCCHHHCCCCCEEE
T ss_conf 98999778699999999858999877610586632674058817999604520356685013776727865648864576
Q ss_pred CCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHH
Q ss_conf 76548999999999870998999469970257999999999755125788716999980379899999986226469899
Q gi|254780306|r 55 DPSSQKHLQNIIHAVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDL 134 (837)
Q Consensus 55 ~~~~kk~~~~i~~~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~L 134 (837)
T Consensus 81 ~~~~kki~~~Lk~l~k~ad~ViiAtD~DREGE~I~~e~~~i~~~~--~~~~~v~R~~fseiT~~aI~~A~~n~~~~d~~L 158 (740)
T PRK07220 81 TPTNKKIVTALRKLGKEADRVTIATDYDREGELIGVEALNIIKEV--NPDIPFDRVRFSAITKKEIERAFSNPVEVDFNL 158 (740)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHHC--CCCCEEEEEEEECCCHHHHHHHHHCCCCCCHHH
T ss_conf 676489999999998179999989889746489999999999860--899705899970589999999996875358878
Q ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHCC----CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 999999999898740113789886414----6765342268999999999999641376544001223315799654223
Q gi|254780306|r 135 VNAYLARRALDYLVGFNLSPILWQKLP----GARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAH 210 (837)
Q Consensus 135 v~A~~aRr~lD~lvG~~lSp~L~rk~~----~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~ 210 (837)
T Consensus 159 ~~A~~aR~~lD~lvG~nlSr~lt~~~~~~g~~~LSaGRVQTPtL~lIVeRe~EI~~F~p~~Yw~i~a~~~~-~~~~~~~~ 237 (740)
T PRK07220 159 ADAGEARQVIDLVWGAALTRYISLAAGRLGKMFLSVGRVQSPTLALIVDREKERNAFVPTPYWEIYAELEN-AGETFSAQ 237 (740)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CCCEEEEE
T ss_conf 99999999999984121658998997650677644231013889999999999984799642899999972-99049985
Q ss_pred EEEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 31035833033101135666777642001563010000233222468521037999998876088899999999876213
Q gi|254780306|r 211 LTDFNGQRIEKKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEG 290 (837)
Q Consensus 211 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~ 290 (837)
T Consensus 238 ~--------~~~r~~d~~~a~~i~~~l~-~~~~V~~v~~k~~~~~pP~Pf~ts~Lq~~Ask-lg~Sa~~Tm~iAQ~LYe- 306 (740)
T PRK07220 238 H--------STRRFLDKEEADRVLEKLG-KKAEVKEIEKGEKTDQPPTPFNTTGFISAASS-IGFSPANAMRIAESLYT- 306 (740)
T ss_pred C--------CCCCCCCHHHHHHHHHHCC-CCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH-CCCCHHHHHHHHHHHHC-
T ss_conf 0--------5677799999999999726-98489999835301489898767999999987-69979999999998742-
Q ss_pred CCCCCHHHHHHHHCCCCCCCCCHHH-H-HHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHC
Q ss_conf 5567212245531475544443056-8-9999765520011--2376311112556668877765247730234640000
Q gi|254780306|r 291 IDVNGEIVGLITYMRTDGVHMSPDA-L-EAVRRSITSHYGD--HYLPEKPRIYSSKSKNAQEAHEAIRPNDFDFLPSKMK 366 (837)
Q Consensus 291 ~~~~~~~~GlITYpRTDS~~ls~ea-~-~~~r~~i~~~~g~--~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~~p~~~~ 366 (837)
T Consensus 307 -------~GlITYpRTDS~~lp~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~AI~PT~~~~-----~ 374 (740)
T PRK07220 307 -------NGYISYPRTDNTVYPESLDLRAQLEIFAEGPFGEYADKLLEKGELVPTRGKKETTDHPPIYPASLAK-----K 374 (740)
T ss_pred -------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----C
T ss_conf -------8832146666540650276999999998605788899750157667786522101333435556566-----4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCCCHHHCCCCC
Q ss_conf 01999999999999999999852221100100136774079639999987488058856763267776321001014886
Q gi|254780306|r 367 QFLDSDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKNSEEDILLPY 446 (837)
Q Consensus 367 ~~L~~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~~~~~~~LP~ 446 (837)
T Consensus 375 ~~L~~de~klY~LI~rRflAs~m~~a~~~~t~v~~~~~~----~~F~a~G~~i~~~Gw~~vy~~~~------~~d~~LP~ 444 (740)
T PRK07220 375 SDLKEDEWKVYELVVRRFFATLAGPATWETMRLRFDIGG----EEFKANGARLLEQGWRWYYPYNR------PEDRLLPE 444 (740)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCHHEEEEEEEEEEECC----EEEEEEEEEEEECCHHHHCCCCC------CCCCCCCC
T ss_conf 559999999999999999997373543032899999899----89998658996376798617776------41001887
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCC
Q ss_conf 45688211001101112346431017899874332102566551578999997322022147712220114200002233
Q gi|254780306|r 447 ISANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLEN 526 (837)
Q Consensus 447 l~~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~ 526 (837)
T Consensus 445 l~~Ge~~~~~~~~~~~k~TkPP~ryTEasLIk~ME~~GIGtpATrA~iIe~L~~R~YV--e~~~l~PT~~G~~v~~~L~~ 522 (740)
T PRK07220 445 LSEGDILKVIKKEMLDKETQPPGRYGQGRLIKLMEDLGLGTKATRHEIISKLYSRAYI--HGNPIQPTNTSFAVVDALEK 522 (740)
T ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCC--CCCCCCCCHHHHHHHHHHHH
T ss_conf 7789885666778873004899888989999999738998500499999999861883--28865254799999999987
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECC
Q ss_conf 66556898899999999999862601347899998676766557667755666776556766410245555676611433
Q gi|254780306|r 527 FFSQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCP 606 (837)
Q Consensus 527 ~f~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp 606 (837)
T Consensus 523 ~~~~l~~p~~Ta~~E~~Ld~Ia~Gk~~~~~vl~e~~~~~~~~~~~~~~~~-~~i~~~--------~~~~~~~~~~~~~CP 593 (740)
T PRK07220 523 YAPTITKPDMTKLLEEDMDLIAEGKIKEDAVLEESREMLEQVFDELDKNR-EKIIES--------LQAGLREDKIIGKCS 593 (740)
T ss_pred HCHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--------HHHCCCCCCCCCCCC
T ss_conf 23453591279999999999986999899999999999999999999989-999987--------653023677789788
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 46777313687157761112343432333210012210000123442014689999669998
Q gi|254780306|r 607 ECHTHSLSLKLSSKYGAFVGCTNYPECKYTRQLTSNPQDIPEMKESVLLGNDLETKESVTLR 668 (837)
Q Consensus 607 ~C~~g~L~~k~~gK~G~FigCSnyPeCk~t~~l~~~~~~~~~~~~~~~LG~dP~~G~~I~lk 668 (837)
T Consensus 594 ~Cg~~l~-~r~~k~g~~FigCs~YP~C~~t~pLp~~g~~~-~-~----~~~C~~~~~~~~~~ 648 (740)
T PRK07220 594 LCGSELM-VRRSKRGSRFIGCSGYPNCTFSLPLPKSGQII-V-T----DKVCEAHGLHHIKI 648 (740)
T ss_pred CCCCCCE-EEECCCCCEEEECCCCCCCCCCEECCCCCCEE-E-C----CCCCCCCCCEEEEE
T ss_conf 8996004-77458799788589899999852269998463-4-7----88687799837999