HHsearch alignment for GI: 254780306 and conserved domain: PRK07561
>PRK07561 DNA topoisomerase I; Validated.
Probab=100.00 E-value=0 Score=2009.33 Aligned_cols=790 Identities=40% Similarity=0.647 Sum_probs=715.4
Q ss_pred CEEEECCHHHHHHHHHHHCCCCEEEEEECCCEECCCC--------------CCCCCCCCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 1899779047877887508998999942511007865--------------57867666744068877654899999999
Q gi|254780306|r 2 NVIIVESPAKAKTISKYLGSNYKVLSSFGHIRDLPAK--------------KGSVLPEKEFEMIWNIDPSSQKHLQNIIH 67 (837)
Q Consensus 2 ~LvIvEsP~kak~I~~~Lg~~y~V~as~GHirdLp~~--------------~~~v~~~~~f~p~y~v~~~~kk~~~~i~~ 67 (837)
T Consensus 3 ~LVIVESPaKaktI~kyLG~~y~V~AS~GHirDLp~~~~~vp~~~k~~~~~~~gvd~~~~f~p~y~i~~~kkk~v~~Lk~ 82 (878)
T PRK07561 3 TLVIVESPTKARTIRNFLPKGYRVEASMGHVRDLPNSASEIPAAVKGEKWANLGVNVEADFEPLYVVPKDKKKVVKELKD 82 (878)
T ss_pred CEEEEECCHHHHHHHHHCCCCCEEEEECCCHHCCCCCCCCCCCHHCCCCHHHCCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 48999373888999986698979996066152057764557401112303105435588952677868768999999999
Q ss_pred HHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 98709989994699702579999999997551257887169999803798999999862264698999999999998987
Q gi|254780306|r 68 AVKSSTILILATDPDREGEAISWHVLDVLRQKNLIEKTKIQRVSFNAITKQVVLNAMKSPRDINLDLVNAYLARRALDYL 147 (837)
Q Consensus 68 ~~k~a~~iilAtD~DREGE~Iawhi~e~l~~~~~~~~~~v~R~~f~eiT~~aI~~A~~n~r~~d~~Lv~A~~aRr~lD~l 147 (837)
T Consensus 83 ~~k~ad~V~lATDpDREGEaIawhl~e~l~~-----~~~vkRi~F~EITk~AI~~Ai~npr~id~~LV~Aq~aRRilDrl 157 (878)
T PRK07561 83 ALKGADELLLATDEDREGESISWHLLQLLKP-----KVPTKRMVFHEITKEAIQKALDNTREIDMELVHAQETRRILDRL 157 (878)
T ss_pred HHHCCCEEEECCCCCCCCHHHHHHHHHHHCC-----CCCEEEEEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9857998998889971406999999998489-----99706899946899999999968541688889999999998864
Q ss_pred HHHHHCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEECCEEEC-------
Q ss_conf 4011378988641467653422689999999999996413765440012233157996542233103583303-------
Q gi|254780306|r 148 VGFNLSPILWQKLPGARSAGRVQSVALRLICNRENQIESFVSEEYWSLSVLLETPRNDKFTAHLTDFNGQRIE------- 220 (837)
Q Consensus 148 vG~~lSp~L~rk~~~~lSaGRVQtp~L~lIveRe~eI~~F~p~~y~~i~a~~~~~~~~~f~a~l~~~~~~~~~------- 220 (837)
T Consensus 158 VGf~lSp~Lw~k~~~~LSAGRVQSpaLrLIveRE~EI~~F~p~~Yw~i~a~~~~-~~~~f~a~l~~~~~~ki~~~~dfd~ 236 (878)
T PRK07561 158 VGYTLSPLLWKKIAWGLSAGRVQSVAVRLLVQRERERRAFKSGSYWDLKAQLEK-DGSPFEAKLTTLGGQRIATGSDFDE 236 (878)
T ss_pred HCCEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CCCEEEEEEEEECCEEECCCCCCCC
T ss_conf 252405999975178997640189999999998999983587552899999824-8861799997318856403555542
Q ss_pred ---------CCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
Q ss_conf ---------31011356667776420015630100002332224685210379999988760888999999998762135
Q gi|254780306|r 221 ---------KKSISNKKEADDLISFVKKATYSVEKIENKPIKRNPWPAFTTSTLQQVASSRLGFSASHTMRIAQKLYEGI 291 (837)
Q Consensus 221 ---------~~~~~~~~~a~~~~~~~~~~~~~V~~v~~k~~~~~Pp~Pf~tstLQq~As~~lg~sa~~Tm~iAQ~LYE~~ 291 (837)
T Consensus 237 ~t~~~~~~~~~~~~~e~~A~~~~~~l~~~~~~V~~ve~K~~~r~PppPFtTSTLQQeAs~kLGfSa~~TM~iAQ~LYE-- 314 (878)
T PRK07561 237 STGQLKAGRDVVLLDEEEAKALKERLTGKPWTVSSVEEKPTTRKPVPPFTTSTLQQEANRKLRLSARETMRCAQGLYE-- 314 (878)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH--
T ss_conf 111223454343389999999999842797699998752200379998567999999986159589999999999985--
Q ss_pred CCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCC-CCCHHCCCCC
Q ss_conf 567212245531475544443056899997655200112376311112556668877765247730234-6400000199
Q gi|254780306|r 292 DVNGEIVGLITYMRTDGVHMSPDALEAVRRSITSHYGDHYLPEKPRIYSSKSKNAQEAHEAIRPNDFDF-LPSKMKQFLD 370 (837)
Q Consensus 292 ~~~~~~~GlITYpRTDS~~ls~ea~~~~r~~i~~~~g~~~l~~~~r~y~~k~k~aQeAHeAIrPT~~~~-~p~~~~~~L~ 370 (837)
T Consensus 315 ------~GlITYmRTDS~~lS~eai~~~r~~I~~~yG~~yl~~~~r~y~~k~k~aQeAHEAIRPT~~~~~~p~~--~~L~ 386 (878)
T PRK07561 315 ------RGFITYMRTDSVHLSEQAIRAARSCVESMYGKEYLSPQPRQYTTKSKNAQEAHEAIRPAGETFRTPQE--TGLS 386 (878)
T ss_pred ------CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHH--CCCC
T ss_conf ------88378864787656999999999999874144227611200035656763561341444522258333--0899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHEECCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHCCCCCCCCC--CHHHCCCCCCC
Q ss_conf 9999999999999999852221100100136774079639999987488058856763267776321--00101488645
Q gi|254780306|r 371 SDQFQLYNLIWKRSVASQMASAKFERTTVNIIATYNDQIGHLRTTGSLLCFDGFLKVWENQYDQEKN--SEEDILLPYIS 448 (837)
Q Consensus 371 ~de~klY~LI~~R~lasqm~~a~~~~~~v~i~~~~~~~~~~F~asg~~i~~~G~~~vy~~~~~~~~~--~~~~~~LP~l~ 448 (837)
T Consensus 387 ~de~kLY~LIwkRtlASqM~~a~~~~t~v~i~~~~----~~F~asG~~i~f~G~~~vy~e~~dd~~~~~e~~~~~LP~l~ 462 (878)
T PRK07561 387 GRELALYDLIWKRTVASQMAEARLTMISVELSVGD----ALFRASGKRIDFPGFFRAYVEGSDDPDAALEDQEVILPALK 462 (878)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHEEEEEEEEEECC----EEEEEEEEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 88999999999999986057321789999999288----69999769996178689984156762112232222277657
Q ss_pred CCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCEEECCCCCEEECCHHHHHCCCCCCCC
Q ss_conf 68821100110111234643101789987433210256655157899999732202214771222011420000223366
Q gi|254780306|r 449 ANEQLIATETNASQHFTEPPPRYSESSLIKKMEEIGIGRPSTYATILETLYKRKYVIAEKRKILPQNTGRIVTAFLENFF 528 (837)
Q Consensus 449 ~g~~~~~~~~~~~~~~TkPP~rytEasLik~mE~~GIGrPSTyA~II~~L~~R~YV~~~~~~l~pT~~G~~v~~~L~~~f 528 (837)
T Consensus 463 ~Gd~l~~~~i~~~~~~TkPP~RYTEASLVk~MEe~GIGRPSTYAsII~tL~~R~YV~~~~~~l~Pt~~G~~V~~fL~~~F 542 (878)
T PRK07561 463 VGDHPECKSLEALGHETQPPARYTEASLVKTLEKEGIGRPSTYASIIGTIVDRGYAQLRSNALVPTFTAFAVTALLEEHF 542 (878)
T ss_pred CCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEECCCCEECCHHHHHHHHHHHHHHH
T ss_conf 89832014666444562799997989999999966999871279999888627878436953353487899999999876
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCC
Q ss_conf 55689889999999999986260134789999867676655766775566677655676641024555567661143346
Q gi|254780306|r 529 SQYVEYDFTADLEEKLDEISTGKLNWKEVLHEFWEEFIEKIDSIKKLRISNVLDILNDTLSSVIFPPKENNEDSRTCPEC 608 (837)
Q Consensus 529 ~~~~~~~fTa~~E~~ld~Ia~G~~~~~~~L~~Fy~~f~~~i~~~~~~~~~~v~d~l~~~~~~~~~~~~~~~~~~~~Cp~C 608 (837)
T Consensus 543 ~~~vdy~FTA~mE~~LD~Ia~G~~~w~~~l~~Fy~~~~~~~~~-----v~~~~~~i-------------d~~~~~~~~~~ 604 (878)
T PRK07561 543 PDLVDTSFTARMEQTLDEISTGEVQWLPYLEGFYKGEKGLETQ-----VKKREGDI-------------DPGAARTVDLE 604 (878)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHH-----HHHHCCCC-------------CHHHCCCCCCC
T ss_conf 7761833079999877688669606899999984788652334-----44300345-------------85441465778
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCC----------CCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
Q ss_conf 777313687157761112343432-33321001221000----------0123442014689999669998269742277
Q gi|254780306|r 609 HTHSLSLKLSSKYGAFVGCTNYPE-CKYTRQLTSNPQDI----------PEMKESVLLGNDLETKESVTLRSGRFGLYVQ 677 (837)
Q Consensus 609 ~~g~L~~k~~gK~G~FigCSnyPe-Ck~t~~l~~~~~~~----------~~~~~~~~LG~dP~~G~~I~lk~GryGpYvq 677 (837)
T Consensus 605 ~-~~~~~r-~gk~G~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~~~~g~r~LG~dP~tg~~V~~k~GryGpyvq 682 (878)
T PRK07561 605 G-LPCVVR-IGRFGPYLEGEREEEPIKASLPQDITPADLDPEQVEQILKQKTEGPEKLGTHPETGEPVYLLFGPYGPYVQ 682 (878)
T ss_pred C-CCCEEE-EECCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCEEE
T ss_conf 9-862366-41676720210587653102676558654787888776412467873236689999868999358218698
Q ss_pred ECC----CCCCCCCCCCCCCCHHHCCHHHHHHHHHCCHHHCCCCCCCCEEEEEECCCCCEEEEC-----CEECCCCCCCC
Q ss_conf 348----877761337899884254899999986152551577789874999115876526167-----81112488775
Q gi|254780306|r 678 RGD----GKDAKRCSLPKTWKSDSVDYDKAMSLLSLPREIGIHPETQKNIIAGTGKYGYYLNHD-----GAYTKLESIEQ 748 (837)
Q Consensus 678 ~Ge----~~kpkr~si~k~~~~~~itle~Al~LLsLPr~lG~~pe~g~~I~~~~GryGpYi~~~-----~~~~sl~~~~~ 748 (837)
T Consensus 683 lG~~~~~~~Kpk~asl~k~~~~~~itle~Al~LlsLPr~lG~~pe~g~~I~a~~GrfGPY~~~dg~k~g~~~~sl~~~~~ 762 (878)
T PRK07561 683 LGDVTEENPKPKRASLPKGVKPEDVTLEMALGLLSLPRLLGEHPETGGKIQAGLGRFGPYVVHDKGKGEKDYRSLKKEDD 762 (878)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHCCCCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCCCCC
T ss_conf 04777667787644568999804268999999970757537887899879987678776674047766764145799887
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCCCC-CCEEEEECCCCCEEEECCEEEECCCCCCHHHCCHHHHHH
Q ss_conf 1435799999999836511344344544320102678989-846996068545253678887565788967789999999
Q gi|254780306|r 749 VLTIDLEQAISCITEKKKIEKSSRKNSKNQGHVIGTHPEG-GSITVHNGRYGPYLHWKKINASLSKEESPDTVDLEKALK 827 (837)
Q Consensus 749 ~~~I~l~~Aieli~~~k~~~~~~~~~~~~~~~~lg~~p~~-~~i~i~~GryGpYi~~gk~Na~ipk~~~~e~lt~e~a~~ 827 (837)
T Consensus 763 ~~~i~l~~Av~lia~~k~~~~-----~~~~lk~lg~~p~~~~~i~v~~GRyGpYv~~gk~na~ipk~~~p~~ltle~a~~ 837 (878)
T PRK07561 763 VLTVDLERALELLAMPKKGRG-----GKTPLKELGKHPEDGEPVQVYDGPYGLYVKHGKVNASLPEGKTAEDITLEEALE 837 (878)
T ss_pred CEEECHHHHHHHHHHHHCCCC-----CCCHHHHCCCCCCCCCCEEEECCCCCEEEEECCEEECCCCCCCHHHCCHHHHHH
T ss_conf 645159999999961321465-----542366628997899835995488610688797885169999834488999999
Q ss_pred HHHHHHHCC
Q ss_conf 998777266
Q gi|254780306|r 828 ILNIKKQKK 836 (837)
Q Consensus 828 li~~k~~kk 836 (837)
T Consensus 838 li~~k~~~~ 846 (878)
T PRK07561 838 LLAEKASSK 846 (878)
T ss_pred HHHHHCCCC
T ss_conf 998424378